RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 CCDC18Q5T9S5 1454 aa29.87■■■□□ 2.37
USB1-213ENST00000566292 ZFYVE16Q7Z3T8 1539 aa29.86■■■□□ 2.37
USB1-213ENST00000566292 MADDQ8WXG6 1647 aa29.85■■■□□ 2.37
USB1-213ENST00000566292 SIGLEC1Q9BZZ2 1709 aa29.85■■■□□ 2.37
USB1-213ENST00000566292 YEATS2Q9ULM3 1422 aa29.85■■■□□ 2.37
USB1-213ENST00000566292 EFCAB2Q5VUJ9 269 aa29.84■■■□□ 2.37
USB1-213ENST00000566292 ARID4BQ4LE39 1312 aaPredicted RBP29.84■■■□□ 2.37
USB1-213ENST00000566292 PTPRMP28827 1452 aa29.84■■■□□ 2.37
USB1-213ENST00000566292 MAGI2Q86UL8 1455 aa29.83■■■□□ 2.37
USB1-213ENST00000566292 CDC42BPBQ9Y5S2 1711 aa29.82■■■□□ 2.36
USB1-213ENST00000566292 FYCO1Q9BQS8 1478 aa29.82■■■□□ 2.36
USB1-213ENST00000566292 ARHGAP5Q13017 1502 aa29.81■■■□□ 2.36
USB1-213ENST00000566292 PREX2Q70Z35 1606 aa29.77■■■□□ 2.36
USB1-213ENST00000566292 RIMS1Q86UR5 1692 aaKnown RBP29.76■■■□□ 2.35
USB1-213ENST00000566292 CDC42BPAQ5VT25 1732 aa29.72■■■□□ 2.35
USB1-213ENST00000566292 ZNF518AQ6AHZ1 1483 aa29.71■■■□□ 2.35
USB1-213ENST00000566292 KDM5CP41229 1560 aa29.71■■■□□ 2.35
USB1-213ENST00000566292 ATP10AO60312 1499 aa29.68■■■□□ 2.34
USB1-213ENST00000566292 ABCC1P33527 1531 aa29.66■■■□□ 2.34
USB1-213ENST00000566292 AFAP1Q8N556 730 aa29.65■■■□□ 2.34
USB1-213ENST00000566292 ITSN2Q9NZM3 1697 aa29.65■■■□□ 2.34
USB1-213ENST00000566292 C9orf84Q5VXU9 1444 aa29.64■■■□□ 2.34
USB1-213ENST00000566292 FER1L4A9Z1Z3 1794 aa29.63■■■□□ 2.33
USB1-213ENST00000566292 ARHGEF12Q9NZN5 1544 aa29.63■■■□□ 2.33
USB1-213ENST00000566292 MLECQ14165 292 aa29.6■■■□□ 2.33
USB1-213ENST00000566292 DIP2CQ9Y2E4 1556 aa29.6■■■□□ 2.33
USB1-213ENST00000566292 TRAPPC8Q9Y2L5 1435 aa29.59■■■□□ 2.33
USB1-213ENST00000566292 ABCA6Q8N139 1617 aa29.57■■■□□ 2.32
USB1-213ENST00000566292 CEP162Q5TB80 1403 aa29.57■■■□□ 2.32
USB1-213ENST00000566292 MLH3Q9UHC1 1453 aa29.56■■■□□ 2.32
USB1-213ENST00000566292 GPATCH8Q9UKJ3 1502 aaKnown RBP29.55■■■□□ 2.32
USB1-213ENST00000566292 SAMD9LQ8IVG5 1584 aa29.55■■■□□ 2.32
USB1-213ENST00000566292 LMTK3Q96Q04 1460 aa29.55■■■□□ 2.32
USB1-213ENST00000566292 REREQ9P2R6 1566 aa29.52■■■□□ 2.32
USB1-213ENST00000566292 MYT1LQ9UL68 1186 aa29.52■■■□□ 2.32
USB1-213ENST00000566292 KIDINS220Q9ULH0 1771 aa29.52■■■□□ 2.32
USB1-213ENST00000566292 PLPPR3Q6T4P5 718 aa29.5■■■□□ 2.31
USB1-213ENST00000566292 MTUS2Q5JR59 1369 aa29.49■■■□□ 2.31
USB1-213ENST00000566292 ZNF777Q9ULD5 760 aaPredicted RBP29.48■■■□□ 2.31
USB1-213ENST00000566292 SYCP2Q9BX26 1530 aa29.48■■■□□ 2.31
USB1-213ENST00000566292 EHBP1L1Q8N3D4 1523 aa29.44■■■□□ 2.3
USB1-213ENST00000566292 CCNB3Q8WWL7 1395 aa29.43■■■□□ 2.3
USB1-213ENST00000566292 ILDR1Q86SU0 546 aaPredicted RBP29.42■■■□□ 2.3
USB1-213ENST00000566292 TIAM1Q13009 1591 aa29.42■■■□□ 2.3
USB1-213ENST00000566292 AGLP35573 1532 aa29.41■■■□□ 2.3
USB1-213ENST00000566292 CFDP1Q9UEE9 299 aaPredicted RBP29.4■■■□□ 2.3
USB1-213ENST00000566292 HNRNPMP52272 730 aaKnown RBP eCLIP29.39■■■□□ 2.3
USB1-213ENST00000566292 KIAA1107Q9UPP5 1409 aa29.38■■■□□ 2.29
USB1-213ENST00000566292 LOC105371045A0A1W2PR82 267 aa29.38■■■□□ 2.29
USB1-213ENST00000566292 PLEKHH2Q8IVE3 1493 aa29.37■■■□□ 2.29
USB1-213ENST00000566292 CEBPAP49715 358 aaPredicted RBP29.35■■■□□ 2.29
USB1-213ENST00000566292 HSPA2P54652 639 aa29.35■■■□□ 2.29
USB1-213ENST00000566292 INO80Q9ULG1 1556 aaPredicted RBP29.34■■■□□ 2.29
USB1-213ENST00000566292 PREX1Q8TCU6 1659 aa29.34■■■□□ 2.29
USB1-213ENST00000566292 SPAG9O60271 1321 aaKnown RBP29.33■■■□□ 2.29
USB1-213ENST00000566292 ATP7AQ04656 1500 aa29.33■■■□□ 2.29
USB1-213ENST00000566292 C3P01024 1663 aa29.31■■■□□ 2.28
USB1-213ENST00000566292 SUPT6HQ7KZ85 1726 aaKnown RBP29.29■■■□□ 2.28
USB1-213ENST00000566292 ZNF644Q9H582 1327 aaPredicted RBP29.28■■■□□ 2.28
USB1-213ENST00000566292 SETD1BQ9UPS6 1966 aaKnown RBP29.26■■■□□ 2.28
USB1-213ENST00000566292 VPS8Q8N3P4 1428 aa29.26■■■□□ 2.27
USB1-213ENST00000566292 NCOA2Q15596 1464 aa29.25■■■□□ 2.27
USB1-213ENST00000566292 MBD5Q9P267 1494 aa29.25■■■□□ 2.27
USB1-213ENST00000566292 PLXNC1O60486 1568 aa29.25■■■□□ 2.27
USB1-213ENST00000566292 ADGBQ8N7X0 1667 aa29.21■■■□□ 2.27
USB1-213ENST00000566292 A2MP01023 1474 aa29.2■■■□□ 2.26
USB1-213ENST00000566292 ESF1Q9H501 851 aaKnown RBP29.19■■■□□ 2.26
USB1-213ENST00000566292 CNTLNQ9NXG0 1405 aa29.19■■■□□ 2.26
USB1-213ENST00000566292 MROH2AA6NES4 1674 aa29.18■■■□□ 2.26
USB1-213ENST00000566292 UHRF1BP1Q6BDS2 1440 aa29.17■■■□□ 2.26
USB1-213ENST00000566292 CAMSAP2Q08AD1 1489 aa29.16■■■□□ 2.26
USB1-213ENST00000566292 LRRC9Q6ZRR7 1453 aa29.16■■■□□ 2.26
USB1-213ENST00000566292 CLTCQ00610 1675 aaKnown RBP29.13■■■□□ 2.25
USB1-213ENST00000566292 STRCQ7RTU9 1775 aa29.13■■■□□ 2.25
USB1-213ENST00000566292 RTEL1-TNFRSF6BF6WH68 1400 aa29.12■■■□□ 2.25
USB1-213ENST00000566292 CCDC141Q6ZP82 1450 aa29.1■■■□□ 2.25
USB1-213ENST00000566292 MAP3K1Q13233 1512 aa29.1■■■□□ 2.25
USB1-213ENST00000566292 ZMYM3Q14202 1370 aa29.07■■■□□ 2.24
USB1-213ENST00000566292 FBXO41Q8TF61 875 aa29.06■■■□□ 2.24
USB1-213ENST00000566292 ARHGEF5Q12774 1597 aa29.05■■■□□ 2.24
USB1-213ENST00000566292 KANK4Q5T7N3 995 aaPredicted RBP29.05■■■□□ 2.24
USB1-213ENST00000566292 GGT6Q6P531 493 aa29.04■■■□□ 2.24
USB1-213ENST00000566292 NPATQ14207 1427 aa29.03■■■□□ 2.24
USB1-213ENST00000566292 DHX29Q7Z478 1369 aaKnown RBP29.02■■■□□ 2.24
USB1-213ENST00000566292 RSPH4AQ5TD94 716 aa29.01■■■□□ 2.23
USB1-213ENST00000566292 PPP6R1Q9UPN7 881 aa28.96■■■□□ 2.23
USB1-213ENST00000566292 PTPRKQ15262 1439 aa28.95■■■□□ 2.23
USB1-213ENST00000566292 MYO3AQ8NEV4 1616 aa28.94■■■□□ 2.22
USB1-213ENST00000566292 MYOM3Q5VTT5 1437 aa28.94■■■□□ 2.22
USB1-213ENST00000566292 DMRT2Q9Y5R5 561 aa28.93■■■□□ 2.22
USB1-213ENST00000566292 ZNF142P52746 1687 aaPredicted RBP28.93■■■□□ 2.22
USB1-213ENST00000566292 MAST1Q9Y2H9 1570 aa28.92■■■□□ 2.22
USB1-213ENST00000566292 KIF3BO15066 747 aa28.91■■■□□ 2.22
USB1-213ENST00000566292 NCOA1Q15788 1441 aa28.91■■■□□ 2.22
USB1-213ENST00000566292 MIA2Q96PC5 1412 aa28.91■■■□□ 2.22
USB1-213ENST00000566292 TSPY4P0CV99 314 aa28.9■■■□□ 2.22
USB1-213ENST00000566292 TSPY10P0CW01 314 aa28.9■■■□□ 2.22
USB1-213ENST00000566292 CAMSAP1Q5T5Y3 1602 aa28.9■■■□□ 2.22
USB1-213ENST00000566292 CERKQ8TCT0 537 aa28.89■■■□□ 2.22
USB1-213ENST00000566292 PTPRTO14522 1441 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms