RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 EFCAB2Q5VUJ9 269 aa19.54■□□□□ 0.72
SF3B3-206ENST00000565990 PPARGC1BQ86YN6 1023 aaKnown RBP19.54■□□□□ 0.72
SF3B3-206ENST00000565990 NEO1Q92859 1461 aa19.52■□□□□ 0.72
SF3B3-206ENST00000565990 ITSN2Q9NZM3 1697 aa19.52■□□□□ 0.71
SF3B3-206ENST00000565990 CFDP1Q9UEE9 299 aaPredicted RBP19.51■□□□□ 0.71
SF3B3-206ENST00000565990 FANCAO15360 1455 aa19.51■□□□□ 0.71
SF3B3-206ENST00000565990 MYOM3Q5VTT5 1437 aa19.5■□□□□ 0.71
SF3B3-206ENST00000565990 MIA2Q96PC5 1412 aa19.5■□□□□ 0.71
SF3B3-206ENST00000565990 ARHGAP5Q13017 1502 aa19.49■□□□□ 0.71
SF3B3-206ENST00000565990 AKNAQ7Z591 1439 aa19.49■□□□□ 0.71
SF3B3-206ENST00000565990 CFAP74Q9C0B2 1584 aa19.48■□□□□ 0.71
SF3B3-206ENST00000565990 SAMD9LQ8IVG5 1584 aa19.44■□□□□ 0.7
SF3B3-206ENST00000565990 KIAA1107Q9UPP5 1409 aa19.43■□□□□ 0.7
SF3B3-206ENST00000565990 COL17A1Q9UMD9 1497 aaPredicted RBP19.43■□□□□ 0.7
SF3B3-206ENST00000565990 ZNF644Q9H582 1327 aaPredicted RBP19.43■□□□□ 0.7
SF3B3-206ENST00000565990 ZNF777Q9ULD5 760 aaPredicted RBP19.42■□□□□ 0.7
SF3B3-206ENST00000565990 FGD6Q6ZV73 1430 aa19.42■□□□□ 0.7
SF3B3-206ENST00000565990 PLEKHH2Q8IVE3 1493 aa19.41■□□□□ 0.7
SF3B3-206ENST00000565990 SCAPERQ9BY12 1400 aa19.4■□□□□ 0.7
SF3B3-206ENST00000565990 ADGRL1O94910 1474 aa19.4■□□□□ 0.7
SF3B3-206ENST00000565990 ARHGEF12Q9NZN5 1544 aa19.4■□□□□ 0.7
SF3B3-206ENST00000565990 RSPH4AQ5TD94 716 aa19.39■□□□□ 0.69
SF3B3-206ENST00000565990 TCOF1Q13428 1488 aaKnown RBP19.39■□□□□ 0.69
SF3B3-206ENST00000565990 ABCC1P33527 1531 aa19.39■□□□□ 0.69
SF3B3-206ENST00000565990 PTPN23Q9H3S7 1636 aa19.38■□□□□ 0.69
SF3B3-206ENST00000565990 MBD5Q9P267 1494 aa19.38■□□□□ 0.69
SF3B3-206ENST00000565990 HNRNPMP52272 730 aaKnown RBP eCLIP19.37■□□□□ 0.69
SF3B3-206ENST00000565990 DENND4BO75064 1496 aaPredicted RBP19.36■□□□□ 0.69
SF3B3-206ENST00000565990 CAMSAP2Q08AD1 1489 aa19.36■□□□□ 0.69
SF3B3-206ENST00000565990 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.36■□□□□ 0.69
SF3B3-206ENST00000565990 RRBP1Q9P2E9 1410 aaKnown RBP19.35■□□□□ 0.69
SF3B3-206ENST00000565990 RICTORQ6R327 1708 aa19.35■□□□□ 0.69
SF3B3-206ENST00000565990 RAPGEF3O95398 923 aa19.35■□□□□ 0.69
SF3B3-206ENST00000565990 KDM6BO15054 1643 aa19.34■□□□□ 0.69
SF3B3-206ENST00000565990 AFAP1Q8N556 730 aa19.33■□□□□ 0.68
SF3B3-206ENST00000565990 TRAPPC8Q9Y2L5 1435 aa19.33■□□□□ 0.68
SF3B3-206ENST00000565990 ARHGEF5Q12774 1597 aa19.32■□□□□ 0.68
SF3B3-206ENST00000565990 SYCP2Q9BX26 1530 aa19.32■□□□□ 0.68
SF3B3-206ENST00000565990 POGZQ7Z3K3 1410 aa19.32■□□□□ 0.68
SF3B3-206ENST00000565990 FRMPD1Q5SYB0 1578 aa19.31■□□□□ 0.68
SF3B3-206ENST00000565990 ZNF518AQ6AHZ1 1483 aa19.3■□□□□ 0.68
SF3B3-206ENST00000565990 KDM5CP41229 1560 aa19.29■□□□□ 0.68
SF3B3-206ENST00000565990 FAM50AQ14320 339 aaKnown RBP19.27■□□□□ 0.68
SF3B3-206ENST00000565990 ABCC5O15440 1437 aa19.26■□□□□ 0.67
SF3B3-206ENST00000565990 ZMYM4Q5VZL5 1548 aa19.26■□□□□ 0.67
SF3B3-206ENST00000565990 CCDC141Q6ZP82 1450 aa19.26■□□□□ 0.67
SF3B3-206ENST00000565990 MLH3Q9UHC1 1453 aa19.26■□□□□ 0.67
SF3B3-206ENST00000565990 DNMT1P26358 1616 aaKnown RBP19.25■□□□□ 0.67
SF3B3-206ENST00000565990 MAGI2Q86UL8 1455 aa19.25■□□□□ 0.67
SF3B3-206ENST00000565990 TSPY4P0CV99 314 aa19.25■□□□□ 0.67
SF3B3-206ENST00000565990 TSPY10P0CW01 314 aa19.25■□□□□ 0.67
SF3B3-206ENST00000565990 RTEL1-TNFRSF6BF6WH68 1400 aa19.24■□□□□ 0.67
SF3B3-206ENST00000565990 DAPK1P53355 1430 aa19.24■□□□□ 0.67
SF3B3-206ENST00000565990 MAST1Q9Y2H9 1570 aa19.22■□□□□ 0.67
SF3B3-206ENST00000565990 SPAG9O60271 1321 aaKnown RBP19.22■□□□□ 0.67
SF3B3-206ENST00000565990 KIDINS220Q9ULH0 1771 aa19.21■□□□□ 0.67
SF3B3-206ENST00000565990 CROCC2H7BZ55 1655 aa19.21■□□□□ 0.67
SF3B3-206ENST00000565990 HECW2Q9P2P5 1572 aa19.19■□□□□ 0.66
SF3B3-206ENST00000565990 INO80Q9ULG1 1556 aaPredicted RBP19.19■□□□□ 0.66
SF3B3-206ENST00000565990 PTPRKQ15262 1439 aa19.19■□□□□ 0.66
SF3B3-206ENST00000565990 SHANK2Q9UPX8 1470 aa19.19■□□□□ 0.66
SF3B3-206ENST00000565990 ATP7AQ04656 1500 aa19.17■□□□□ 0.66
SF3B3-206ENST00000565990 ZFYVE16Q7Z3T8 1539 aa19.16■□□□□ 0.66
SF3B3-206ENST00000565990 C9orf84Q5VXU9 1444 aa19.16■□□□□ 0.66
SF3B3-206ENST00000565990 YEATS2Q9ULM3 1422 aa19.15■□□□□ 0.66
SF3B3-206ENST00000565990 NCOA1Q15788 1441 aa19.14■□□□□ 0.65
SF3B3-206ENST00000565990 ATP10AO60312 1499 aa19.14■□□□□ 0.65
SF3B3-206ENST00000565990 ROCK1Q13464 1354 aa19.13■□□□□ 0.65
SF3B3-206ENST00000565990 ADGRL2O95490 1459 aa19.13■□□□□ 0.65
SF3B3-206ENST00000565990 ABCA6Q8N139 1617 aa19.12■□□□□ 0.65
SF3B3-206ENST00000565990 DIP2CQ9Y2E4 1556 aa19.12■□□□□ 0.65
SF3B3-206ENST00000565990 CHIC2Q9UKJ5 165 aa19.12■□□□□ 0.65
SF3B3-206ENST00000565990 MYT1LQ9UL68 1186 aa19.12■□□□□ 0.65
SF3B3-206ENST00000565990 PLXNC1O60486 1568 aa19.11■□□□□ 0.65
SF3B3-206ENST00000565990 ITGAEP38570 1179 aa19.11■□□□□ 0.65
SF3B3-206ENST00000565990 ADGBQ8N7X0 1667 aa19.11■□□□□ 0.65
SF3B3-206ENST00000565990 REREQ9P2R6 1566 aa19.1■□□□□ 0.65
SF3B3-206ENST00000565990 ARHGEF40Q8TER5 1519 aa19.1■□□□□ 0.65
SF3B3-206ENST00000565990 ANKRD30AQ9BXX3 1397 aa19.1■□□□□ 0.65
SF3B3-206ENST00000565990 DHX29Q7Z478 1369 aaKnown RBP19.09■□□□□ 0.65
SF3B3-206ENST00000565990 TRIM26Q12899 539 aaPredicted RBP19.08■□□□□ 0.64
SF3B3-206ENST00000565990 RRP7BPQ9NSQ0 103 aa19.07■□□□□ 0.64
SF3B3-206ENST00000565990 A2MP01023 1474 aa19.06■□□□□ 0.64
SF3B3-206ENST00000565990 SIGLEC1Q9BZZ2 1709 aa19.05■□□□□ 0.64
SF3B3-206ENST00000565990 AGLP35573 1532 aa19.05■□□□□ 0.64
SF3B3-206ENST00000565990 DUOX2Q9NRD8 1548 aa19.05■□□□□ 0.64
SF3B3-206ENST00000565990 KIF15Q9NS87 1388 aa19.04■□□□□ 0.64
SF3B3-206ENST00000565990 BCORL1Q5H9F3 1711 aa19.02■□□□□ 0.63
SF3B3-206ENST00000565990 HFM1A2PYH4 1435 aa19■□□□□ 0.63
SF3B3-206ENST00000565990 NAIPQ13075 1403 aa19■□□□□ 0.63
SF3B3-206ENST00000565990 HRCP23327 699 aa18.99■□□□□ 0.63
SF3B3-206ENST00000565990 ERBINQ96RT1 1412 aa18.99■□□□□ 0.63
SF3B3-206ENST00000565990 EIF2AK4Q9P2K8 1649 aaKnown RBP18.98■□□□□ 0.63
SF3B3-206ENST00000565990 ANKRD50Q9ULJ7 1429 aa18.98■□□□□ 0.63
SF3B3-206ENST00000565990 GCC2Q8IWJ2 1684 aa18.96■□□□□ 0.63
SF3B3-206ENST00000565990 KIF3BO15066 747 aa18.95■□□□□ 0.62
SF3B3-206ENST00000565990 PPP6R1Q9UPN7 881 aa18.95■□□□□ 0.62
SF3B3-206ENST00000565990 ARID4BQ4LE39 1312 aaPredicted RBP18.94■□□□□ 0.62
SF3B3-206ENST00000565990 RNF17Q9BXT8 1623 aaKnown RBP18.92■□□□□ 0.62
SF3B3-206ENST00000565990 SETD5Q9C0A6 1442 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms