RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 ITGAEP38570 1179 aa28.32■■■□□ 2.12
COMMD4-213ENST00000565834 CAMSAP2Q08AD1 1489 aa28.32■■■□□ 2.12
COMMD4-213ENST00000565834 ARHGAP5Q13017 1502 aa28.3■■■□□ 2.12
COMMD4-213ENST00000565834 ZNF777Q9ULD5 760 aaPredicted RBP28.28■■■□□ 2.12
COMMD4-213ENST00000565834 PLCH2O75038 1416 aa28.28■■■□□ 2.12
COMMD4-213ENST00000565834 ZNF644Q9H582 1327 aaPredicted RBP28.27■■■□□ 2.12
COMMD4-213ENST00000565834 ARAP3Q8WWN8 1544 aa28.26■■■□□ 2.11
COMMD4-213ENST00000565834 SAMD9LQ8IVG5 1584 aa28.23■■■□□ 2.11
COMMD4-213ENST00000565834 DNMT1P26358 1616 aaKnown RBP28.23■■■□□ 2.11
COMMD4-213ENST00000565834 EFCAB2Q5VUJ9 269 aa28.18■■■□□ 2.1
COMMD4-213ENST00000565834 DAPK1P53355 1430 aa28.18■■■□□ 2.1
COMMD4-213ENST00000565834 PTPRKQ15262 1439 aa28.18■■■□□ 2.1
COMMD4-213ENST00000565834 GLI2P10070 1586 aa28.17■■■□□ 2.1
COMMD4-213ENST00000565834 DIP2BQ9P265 1576 aa28.16■■■□□ 2.1
COMMD4-213ENST00000565834 PLEKHH2Q8IVE3 1493 aa28.16■■■□□ 2.1
COMMD4-213ENST00000565834 ABCC5O15440 1437 aa28.15■■■□□ 2.1
COMMD4-213ENST00000565834 CD109Q6YHK3 1445 aa28.15■■■□□ 2.1
COMMD4-213ENST00000565834 CROCC2H7BZ55 1655 aa28.15■■■□□ 2.1
COMMD4-213ENST00000565834 ARHGEF5Q12774 1597 aa28.14■■■□□ 2.09
COMMD4-213ENST00000565834 FANCAO15360 1455 aa28.13■■■□□ 2.09
COMMD4-213ENST00000565834 MAP3K4Q9Y6R4 1608 aa28.12■■■□□ 2.09
COMMD4-213ENST00000565834 SYCP2Q9BX26 1530 aa28.12■■■□□ 2.09
COMMD4-213ENST00000565834 KIAA1107Q9UPP5 1409 aa28.1■■■□□ 2.09
COMMD4-213ENST00000565834 ABCC1P33527 1531 aa28.1■■■□□ 2.09
COMMD4-213ENST00000565834 MBD5Q9P267 1494 aa28.1■■■□□ 2.09
COMMD4-213ENST00000565834 CFAP74Q9C0B2 1584 aa28.09■■■□□ 2.09
COMMD4-213ENST00000565834 HNRNPMP52272 730 aaKnown RBP eCLIP28.08■■■□□ 2.09
COMMD4-213ENST00000565834 CCDC141Q6ZP82 1450 aa28.06■■■□□ 2.08
COMMD4-213ENST00000565834 ADGBQ8N7X0 1667 aa28.06■■■□□ 2.08
COMMD4-213ENST00000565834 FAM69CQ0P6D2 419 aa28.06■■■□□ 2.08
COMMD4-213ENST00000565834 CHIC2Q9UKJ5 165 aa28.06■■■□□ 2.08
COMMD4-213ENST00000565834 SHANK2Q9UPX8 1470 aa28.05■■■□□ 2.08
COMMD4-213ENST00000565834 AKNAQ7Z591 1439 aa28.05■■■□□ 2.08
COMMD4-213ENST00000565834 RSPH4AQ5TD94 716 aa28.04■■■□□ 2.08
COMMD4-213ENST00000565834 SETD5Q9C0A6 1442 aa28.04■■■□□ 2.08
COMMD4-213ENST00000565834 KIF13AQ9H1H9 1805 aa28.04■■■□□ 2.08
COMMD4-213ENST00000565834 HFM1A2PYH4 1435 aa28.03■■■□□ 2.08
COMMD4-213ENST00000565834 ARHGEF12Q9NZN5 1544 aa28.03■■■□□ 2.08
COMMD4-213ENST00000565834 ROCK1Q13464 1354 aa28.02■■■□□ 2.08
COMMD4-213ENST00000565834 GCC2Q8IWJ2 1684 aa28.01■■■□□ 2.07
COMMD4-213ENST00000565834 ADGRL1O94910 1474 aa28■■■□□ 2.07
COMMD4-213ENST00000565834 C9orf84Q5VXU9 1444 aa27.99■■■□□ 2.07
COMMD4-213ENST00000565834 TSPY4P0CV99 314 aa27.99■■■□□ 2.07
COMMD4-213ENST00000565834 TSPY10P0CW01 314 aa27.99■■■□□ 2.07
COMMD4-213ENST00000565834 ADGRL2O95490 1459 aa27.98■■■□□ 2.07
COMMD4-213ENST00000565834 RAB3GAP2Q9H2M9 1393 aa27.98■■■□□ 2.07
COMMD4-213ENST00000565834 NAIPQ13075 1403 aa27.98■■■□□ 2.07
COMMD4-213ENST00000565834 NEO1Q92859 1461 aa27.98■■■□□ 2.07
COMMD4-213ENST00000565834 RRP7BPQ9NSQ0 103 aa27.97■■■□□ 2.07
COMMD4-213ENST00000565834 TSPOAP1O95153 1857 aa27.96■■■□□ 2.07
COMMD4-213ENST00000565834 MAST1Q9Y2H9 1570 aa27.96■■■□□ 2.07
COMMD4-213ENST00000565834 SCAPERQ9BY12 1400 aa27.94■■■□□ 2.06
COMMD4-213ENST00000565834 TRAPPC8Q9Y2L5 1435 aa27.94■■■□□ 2.06
COMMD4-213ENST00000565834 ANKRD30AQ9BXX3 1397 aa27.94■■■□□ 2.06
COMMD4-213ENST00000565834 NCOA1Q15788 1441 aa27.93■■■□□ 2.06
COMMD4-213ENST00000565834 PPRC1Q5VV67 1664 aaKnown RBP27.92■■■□□ 2.06
COMMD4-213ENST00000565834 TEX14Q8IWB6 1497 aa27.89■■■□□ 2.06
COMMD4-213ENST00000565834 HRCP23327 699 aa27.88■■■□□ 2.05
COMMD4-213ENST00000565834 PLXNC1O60486 1568 aa27.86■■■□□ 2.05
COMMD4-213ENST00000565834 ZNF518AQ6AHZ1 1483 aa27.85■■■□□ 2.05
COMMD4-213ENST00000565834 AFAP1Q8N556 730 aa27.85■■■□□ 2.05
COMMD4-213ENST00000565834 CCER1Q8TC90 406 aaPredicted RBP27.84■■■□□ 2.05
COMMD4-213ENST00000565834 KDM6BO15054 1643 aa27.83■■■□□ 2.05
COMMD4-213ENST00000565834 POGZQ7Z3K3 1410 aa27.83■■■□□ 2.05
COMMD4-213ENST00000565834 SPAG9O60271 1321 aaKnown RBP27.83■■■□□ 2.05
COMMD4-213ENST00000565834 ZFYVE16Q7Z3T8 1539 aa27.82■■■□□ 2.04
COMMD4-213ENST00000565834 KIF15Q9NS87 1388 aa27.82■■■□□ 2.04
COMMD4-213ENST00000565834 INO80Q9ULG1 1556 aaPredicted RBP27.81■■■□□ 2.04
COMMD4-213ENST00000565834 RTEL1-TNFRSF6BF6WH68 1400 aa27.81■■■□□ 2.04
COMMD4-213ENST00000565834 DENND4BO75064 1496 aaPredicted RBP27.81■■■□□ 2.04
COMMD4-213ENST00000565834 ATP7AQ04656 1500 aa27.79■■■□□ 2.04
COMMD4-213ENST00000565834 KDM5CP41229 1560 aa27.79■■■□□ 2.04
COMMD4-213ENST00000565834 ANKRD50Q9ULJ7 1429 aa27.77■■■□□ 2.04
COMMD4-213ENST00000565834 RICTORQ6R327 1708 aa27.77■■■□□ 2.04
COMMD4-213ENST00000565834 DHX57Q6P158 1386 aaKnown RBP27.75■■■□□ 2.03
COMMD4-213ENST00000565834 KIDINS220Q9ULH0 1771 aa27.73■■■□□ 2.03
COMMD4-213ENST00000565834 HECW2Q9P2P5 1572 aa27.73■■■□□ 2.03
COMMD4-213ENST00000565834 DUOX2Q9NRD8 1548 aa27.73■■■□□ 2.03
COMMD4-213ENST00000565834 ACIN1Q9UKV3 1341 aaKnown RBP27.72■■■□□ 2.03
COMMD4-213ENST00000565834 MYT1LQ9UL68 1186 aa27.72■■■□□ 2.03
COMMD4-213ENST00000565834 MLH3Q9UHC1 1453 aa27.7■■■□□ 2.03
COMMD4-213ENST00000565834 TRHP20396 242 aaPredicted RBP27.7■■■□□ 2.02
COMMD4-213ENST00000565834 RAPGEF3O95398 923 aa27.69■■■□□ 2.02
COMMD4-213ENST00000565834 FRMPD1Q5SYB0 1578 aa27.69■■■□□ 2.02
COMMD4-213ENST00000565834 TRIM52Q96A61 297 aa27.66■■■□□ 2.02
COMMD4-213ENST00000565834 ERBINQ96RT1 1412 aa27.66■■■□□ 2.02
COMMD4-213ENST00000565834 ZMYM4Q5VZL5 1548 aa27.63■■■□□ 2.01
COMMD4-213ENST00000565834 ABCA6Q8N139 1617 aa27.6■■■□□ 2.01
COMMD4-213ENST00000565834 CLSPNQ9HAW4 1339 aa27.59■■■□□ 2.01
COMMD4-213ENST00000565834 UNC13BO14795 1591 aa27.57■■■□□ 2
COMMD4-213ENST00000565834 ZEB1P37275 1124 aaPredicted RBP27.56■■■□□ 2
COMMD4-213ENST00000565834 DHX29Q7Z478 1369 aaKnown RBP27.56■■■□□ 2
COMMD4-213ENST00000565834 EIF2AK4Q9P2K8 1649 aaKnown RBP27.56■■■□□ 2
COMMD4-213ENST00000565834 DIP2CQ9Y2E4 1556 aa27.56■■■□□ 2
COMMD4-213ENST00000565834 COL17A1Q9UMD9 1497 aaPredicted RBP27.56■■■□□ 2
COMMD4-213ENST00000565834 A2MP01023 1474 aa27.55■■■□□ 2
COMMD4-213ENST00000565834 MAGI2Q86UL8 1455 aa27.55■■■□□ 2
COMMD4-213ENST00000565834 KDM5DQ9BY66 1539 aa27.54■■■□□ 2
COMMD4-213ENST00000565834 MPHOSPH9Q99550 1183 aa27.52■■■□□ 2
COMMD4-213ENST00000565834 PZPP20742 1482 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms