RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 TROQ12816 1431 aaPredicted RBP29.13■■■□□ 2.25
CSPG4P13-201ENST00000565545 PTPRMP28827 1452 aa29.12■■■□□ 2.25
CSPG4P13-201ENST00000565545 NCOA2Q15596 1464 aa29.11■■■□□ 2.25
CSPG4P13-201ENST00000565545 RRBP1Q9P2E9 1410 aaKnown RBP29.11■■■□□ 2.25
CSPG4P13-201ENST00000565545 ADAMTSL3P82987 1691 aa29.05■■■□□ 2.24
CSPG4P13-201ENST00000565545 DENND4BO75064 1496 aaPredicted RBP29.04■■■□□ 2.24
CSPG4P13-201ENST00000565545 AKNAQ7Z591 1439 aa29.03■■■□□ 2.24
CSPG4P13-201ENST00000565545 CCNB3Q8WWL7 1395 aa29.01■■■□□ 2.24
CSPG4P13-201ENST00000565545 MYOM3Q5VTT5 1437 aa29■■■□□ 2.23
CSPG4P13-201ENST00000565545 FRMPD1Q5SYB0 1578 aa29■■■□□ 2.23
CSPG4P13-201ENST00000565545 FANCAO15360 1455 aa28.99■■■□□ 2.23
CSPG4P13-201ENST00000565545 KIF14Q15058 1648 aa28.98■■■□□ 2.23
CSPG4P13-201ENST00000565545 FBXO41Q8TF61 875 aa28.98■■■□□ 2.23
CSPG4P13-201ENST00000565545 PLPPR3Q6T4P5 718 aa28.97■■■□□ 2.23
CSPG4P13-201ENST00000565545 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.96■■■□□ 2.23
CSPG4P13-201ENST00000565545 BCORL1Q5H9F3 1711 aa28.95■■■□□ 2.23
CSPG4P13-201ENST00000565545 FGD6Q6ZV73 1430 aa28.94■■■□□ 2.22
CSPG4P13-201ENST00000565545 MADDQ8WXG6 1647 aa28.93■■■□□ 2.22
CSPG4P13-201ENST00000565545 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.93■■■□□ 2.22
CSPG4P13-201ENST00000565545 MIA2Q96PC5 1412 aa28.92■■■□□ 2.22
CSPG4P13-201ENST00000565545 ARHGEF40Q8TER5 1519 aa28.9■■■□□ 2.22
CSPG4P13-201ENST00000565545 POGZQ7Z3K3 1410 aa28.9■■■□□ 2.22
CSPG4P13-201ENST00000565545 ITSN2Q9NZM3 1697 aa28.89■■■□□ 2.22
CSPG4P13-201ENST00000565545 CFAP74Q9C0B2 1584 aa28.88■■■□□ 2.21
CSPG4P13-201ENST00000565545 MLECQ14165 292 aa28.87■■■□□ 2.21
CSPG4P13-201ENST00000565545 RICTORQ6R327 1708 aa28.85■■■□□ 2.21
CSPG4P13-201ENST00000565545 TTC37Q6PGP7 1564 aa28.84■■■□□ 2.21
CSPG4P13-201ENST00000565545 PTPN23Q9H3S7 1636 aa28.84■■■□□ 2.21
CSPG4P13-201ENST00000565545 YEATS2Q9ULM3 1422 aa28.84■■■□□ 2.21
CSPG4P13-201ENST00000565545 LMTK3Q96Q04 1460 aa28.84■■■□□ 2.21
CSPG4P13-201ENST00000565545 SCAPERQ9BY12 1400 aa28.83■■■□□ 2.21
CSPG4P13-201ENST00000565545 TCOF1Q13428 1488 aaKnown RBP28.83■■■□□ 2.21
CSPG4P13-201ENST00000565545 ZFYVE16Q7Z3T8 1539 aa28.83■■■□□ 2.21
CSPG4P13-201ENST00000565545 GPATCH8Q9UKJ3 1502 aaKnown RBP28.83■■■□□ 2.21
CSPG4P13-201ENST00000565545 HSPA2P54652 639 aa28.82■■■□□ 2.2
CSPG4P13-201ENST00000565545 RIMS1Q86UR5 1692 aaKnown RBP28.81■■■□□ 2.2
CSPG4P13-201ENST00000565545 PLCH2O75038 1416 aa28.81■■■□□ 2.2
CSPG4P13-201ENST00000565545 MAGI2Q86UL8 1455 aa28.8■■■□□ 2.2
CSPG4P13-201ENST00000565545 FAM50AQ14320 339 aaKnown RBP28.8■■■□□ 2.2
CSPG4P13-201ENST00000565545 EFCAB2Q5VUJ9 269 aa28.8■■■□□ 2.2
CSPG4P13-201ENST00000565545 CDC42BPAQ5VT25 1732 aa28.8■■■□□ 2.2
CSPG4P13-201ENST00000565545 ZMYM4Q5VZL5 1548 aa28.79■■■□□ 2.2
CSPG4P13-201ENST00000565545 CFDP1Q9UEE9 299 aaPredicted RBP28.74■■■□□ 2.19
CSPG4P13-201ENST00000565545 PREX2Q70Z35 1606 aa28.72■■■□□ 2.19
CSPG4P13-201ENST00000565545 MYO5CQ9NQX4 1742 aa28.72■■■□□ 2.19
CSPG4P13-201ENST00000565545 MYT1LQ9UL68 1186 aa28.71■■■□□ 2.19
CSPG4P13-201ENST00000565545 ATP10AO60312 1499 aa28.68■■■□□ 2.18
CSPG4P13-201ENST00000565545 CDC42BPBQ9Y5S2 1711 aa28.68■■■□□ 2.18
CSPG4P13-201ENST00000565545 C9orf84Q5VXU9 1444 aa28.64■■■□□ 2.18
CSPG4P13-201ENST00000565545 CAMSAP2Q08AD1 1489 aa28.64■■■□□ 2.17
CSPG4P13-201ENST00000565545 SIGLEC1Q9BZZ2 1709 aa28.63■■■□□ 2.17
CSPG4P13-201ENST00000565545 AFAP1Q8N556 730 aa28.63■■■□□ 2.17
CSPG4P13-201ENST00000565545 ITGAEP38570 1179 aa28.62■■■□□ 2.17
CSPG4P13-201ENST00000565545 CEBPAP49715 358 aaPredicted RBP28.61■■■□□ 2.17
CSPG4P13-201ENST00000565545 DNMT1P26358 1616 aaKnown RBP28.6■■■□□ 2.17
CSPG4P13-201ENST00000565545 ARHGAP5Q13017 1502 aa28.59■■■□□ 2.17
CSPG4P13-201ENST00000565545 CERKQ8TCT0 537 aa28.58■■■□□ 2.17
CSPG4P13-201ENST00000565545 ZNF777Q9ULD5 760 aaPredicted RBP28.57■■■□□ 2.16
CSPG4P13-201ENST00000565545 ZNF644Q9H582 1327 aaPredicted RBP28.57■■■□□ 2.16
CSPG4P13-201ENST00000565545 ZNF518AQ6AHZ1 1483 aa28.57■■■□□ 2.16
CSPG4P13-201ENST00000565545 FER1L4A9Z1Z3 1794 aa28.57■■■□□ 2.16
CSPG4P13-201ENST00000565545 PLEKHH2Q8IVE3 1493 aa28.56■■■□□ 2.16
CSPG4P13-201ENST00000565545 ARHGEF12Q9NZN5 1544 aa28.55■■■□□ 2.16
CSPG4P13-201ENST00000565545 DAPK1P53355 1430 aa28.54■■■□□ 2.16
CSPG4P13-201ENST00000565545 SAMD9LQ8IVG5 1584 aa28.54■■■□□ 2.16
CSPG4P13-201ENST00000565545 PTPRKQ15262 1439 aa28.52■■■□□ 2.16
CSPG4P13-201ENST00000565545 RSPH4AQ5TD94 716 aa28.52■■■□□ 2.16
CSPG4P13-201ENST00000565545 ARHGEF5Q12774 1597 aa28.52■■■□□ 2.16
CSPG4P13-201ENST00000565545 ABCC5O15440 1437 aa28.52■■■□□ 2.16
CSPG4P13-201ENST00000565545 KIAA1107Q9UPP5 1409 aa28.51■■■□□ 2.15
CSPG4P13-201ENST00000565545 ESF1Q9H501 851 aaKnown RBP28.49■■■□□ 2.15
CSPG4P13-201ENST00000565545 SETD5Q9C0A6 1442 aa28.48■■■□□ 2.15
CSPG4P13-201ENST00000565545 CROCC2H7BZ55 1655 aa28.48■■■□□ 2.15
CSPG4P13-201ENST00000565545 DMRT2Q9Y5R5 561 aa28.47■■■□□ 2.15
CSPG4P13-201ENST00000565545 ROCK1Q13464 1354 aa28.46■■■□□ 2.15
CSPG4P13-201ENST00000565545 HRCP23327 699 aa28.45■■■□□ 2.14
CSPG4P13-201ENST00000565545 MBD5Q9P267 1494 aa28.45■■■□□ 2.14
CSPG4P13-201ENST00000565545 SHANK2Q9UPX8 1470 aa28.45■■■□□ 2.14
CSPG4P13-201ENST00000565545 HFM1A2PYH4 1435 aa28.44■■■□□ 2.14
CSPG4P13-201ENST00000565545 KDM5CP41229 1560 aa28.44■■■□□ 2.14
CSPG4P13-201ENST00000565545 ADGBQ8N7X0 1667 aa28.42■■■□□ 2.14
CSPG4P13-201ENST00000565545 CCDC141Q6ZP82 1450 aa28.41■■■□□ 2.14
CSPG4P13-201ENST00000565545 ABCC1P33527 1531 aa28.41■■■□□ 2.14
CSPG4P13-201ENST00000565545 UHRF1BP1Q6BDS2 1440 aa28.41■■■□□ 2.14
CSPG4P13-201ENST00000565545 MLH3Q9UHC1 1453 aa28.4■■■□□ 2.14
CSPG4P13-201ENST00000565545 SYCP2Q9BX26 1530 aa28.4■■■□□ 2.14
CSPG4P13-201ENST00000565545 TRAPPC8Q9Y2L5 1435 aa28.4■■■□□ 2.14
CSPG4P13-201ENST00000565545 PREX1Q8TCU6 1659 aa28.39■■■□□ 2.14
CSPG4P13-201ENST00000565545 ADGRL2O95490 1459 aa28.39■■■□□ 2.13
CSPG4P13-201ENST00000565545 GCC2Q8IWJ2 1684 aa28.38■■■□□ 2.13
CSPG4P13-201ENST00000565545 DIP2CQ9Y2E4 1556 aa28.38■■■□□ 2.13
CSPG4P13-201ENST00000565545 HNRNPMP52272 730 aaKnown RBP eCLIP28.38■■■□□ 2.13
CSPG4P13-201ENST00000565545 RAB3GAP2Q9H2M9 1393 aa28.37■■■□□ 2.13
CSPG4P13-201ENST00000565545 NAIPQ13075 1403 aa28.37■■■□□ 2.13
CSPG4P13-201ENST00000565545 TSPY4P0CV99 314 aa28.37■■■□□ 2.13
CSPG4P13-201ENST00000565545 TSPY10P0CW01 314 aa28.37■■■□□ 2.13
CSPG4P13-201ENST00000565545 CHIC2Q9UKJ5 165 aa28.36■■■□□ 2.13
CSPG4P13-201ENST00000565545 MAST1Q9Y2H9 1570 aa28.34■■■□□ 2.13
CSPG4P13-201ENST00000565545 ACIN1Q9UKV3 1341 aaKnown RBP28.33■■■□□ 2.13
CSPG4P13-201ENST00000565545 ANKRD30AQ9BXX3 1397 aa28.33■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms