RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 SCAPERQ9BY12 1400 aa38.89■■■■□ 3.82
RAB40C-209ENST00000565511 ZFYVE16Q7Z3T8 1539 aa38.88■■■■□ 3.81
RAB40C-209ENST00000565511 PTPRMP28827 1452 aa38.87■■■■□ 3.81
RAB40C-209ENST00000565511 CDK11AQ9UQ88 783 aaPredicted RBP38.86■■■■□ 3.81
RAB40C-209ENST00000565511 ARID4BQ4LE39 1312 aaPredicted RBP38.83■■■■□ 3.81
RAB40C-209ENST00000565511 CLIP1P30622 1438 aa38.81■■■■□ 3.8
RAB40C-209ENST00000565511 CCDC18Q5T9S5 1454 aa38.8■■■■□ 3.8
RAB40C-209ENST00000565511 CDC42BPBQ9Y5S2 1711 aa38.8■■■■□ 3.8
RAB40C-209ENST00000565511 ARHGAP5Q13017 1502 aa38.79■■■■□ 3.8
RAB40C-209ENST00000565511 MAGI2Q86UL8 1455 aa38.77■■■■□ 3.8
RAB40C-209ENST00000565511 FYCO1Q9BQS8 1478 aa38.77■■■■□ 3.8
RAB40C-209ENST00000565511 RIMS1Q86UR5 1692 aaKnown RBP38.77■■■■□ 3.8
RAB40C-209ENST00000565511 EFCAB2Q5VUJ9 269 aa38.76■■■■□ 3.8
RAB40C-209ENST00000565511 PREX2Q70Z35 1606 aa38.73■■■■□ 3.79
RAB40C-209ENST00000565511 KDM5CP41229 1560 aa38.67■■■■□ 3.78
RAB40C-209ENST00000565511 CDC42BPAQ5VT25 1732 aa38.66■■■■□ 3.78
RAB40C-209ENST00000565511 ZNF518AQ6AHZ1 1483 aa38.62■■■■□ 3.77
RAB40C-209ENST00000565511 ARHGEF12Q9NZN5 1544 aa38.62■■■■□ 3.77
RAB40C-209ENST00000565511 ABCC1P33527 1531 aa38.61■■■■□ 3.77
RAB40C-209ENST00000565511 ATP10AO60312 1499 aa38.6■■■■□ 3.77
RAB40C-209ENST00000565511 AFAP1Q8N556 730 aa38.59■■■■□ 3.77
RAB40C-209ENST00000565511 ITSN2Q9NZM3 1697 aa38.58■■■■□ 3.77
RAB40C-209ENST00000565511 FER1L4A9Z1Z3 1794 aa38.57■■■■□ 3.77
RAB40C-209ENST00000565511 C9orf84Q5VXU9 1444 aa38.57■■■■□ 3.77
RAB40C-209ENST00000565511 DIP2CQ9Y2E4 1556 aa38.55■■■■□ 3.76
RAB40C-209ENST00000565511 MLECQ14165 292 aa38.54■■■■□ 3.76
RAB40C-209ENST00000565511 TRAPPC8Q9Y2L5 1435 aa38.54■■■■□ 3.76
RAB40C-209ENST00000565511 ABCA6Q8N139 1617 aa38.52■■■■□ 3.76
RAB40C-209ENST00000565511 LMTK3Q96Q04 1460 aa38.52■■■■□ 3.76
RAB40C-209ENST00000565511 SAMD9LQ8IVG5 1584 aa38.47■■■■□ 3.75
RAB40C-209ENST00000565511 CEP162Q5TB80 1403 aa38.46■■■■□ 3.75
RAB40C-209ENST00000565511 GPATCH8Q9UKJ3 1502 aaKnown RBP38.45■■■■□ 3.75
RAB40C-209ENST00000565511 PLPPR3Q6T4P5 718 aa38.45■■■■□ 3.75
RAB40C-209ENST00000565511 MLH3Q9UHC1 1453 aa38.44■■■■□ 3.74
RAB40C-209ENST00000565511 KIDINS220Q9ULH0 1771 aa38.42■■■■□ 3.74
RAB40C-209ENST00000565511 REREQ9P2R6 1566 aa38.41■■■■□ 3.74
RAB40C-209ENST00000565511 ILDR1Q86SU0 546 aaPredicted RBP38.4■■■■□ 3.74
RAB40C-209ENST00000565511 SYCP2Q9BX26 1530 aa38.38■■■■□ 3.74
RAB40C-209ENST00000565511 MYT1LQ9UL68 1186 aa38.35■■■■□ 3.73
RAB40C-209ENST00000565511 ZNF777Q9ULD5 760 aaPredicted RBP38.33■■■■□ 3.73
RAB40C-209ENST00000565511 MTUS2Q5JR59 1369 aa38.31■■■■□ 3.72
RAB40C-209ENST00000565511 TIAM1Q13009 1591 aa38.29■■■■□ 3.72
RAB40C-209ENST00000565511 EHBP1L1Q8N3D4 1523 aa38.28■■■■□ 3.72
RAB40C-209ENST00000565511 HSPA2P54652 639 aa38.27■■■■□ 3.72
RAB40C-209ENST00000565511 AGLP35573 1532 aa38.27■■■■□ 3.72
RAB40C-209ENST00000565511 CCNB3Q8WWL7 1395 aa38.25■■■■□ 3.71
RAB40C-209ENST00000565511 CEBPAP49715 358 aaPredicted RBP38.24■■■■□ 3.71
RAB40C-209ENST00000565511 HNRNPMP52272 730 aaKnown RBP eCLIP38.23■■■■□ 3.71
RAB40C-209ENST00000565511 INO80Q9ULG1 1556 aaPredicted RBP38.19■■■■□ 3.7
RAB40C-209ENST00000565511 LOC105371045A0A1W2PR82 267 aa38.19■■■■□ 3.7
RAB40C-209ENST00000565511 CFDP1Q9UEE9 299 aaPredicted RBP38.19■■■■□ 3.7
RAB40C-209ENST00000565511 PREX1Q8TCU6 1659 aa38.18■■■■□ 3.7
RAB40C-209ENST00000565511 KIAA1107Q9UPP5 1409 aa38.18■■■■□ 3.7
RAB40C-209ENST00000565511 C3P01024 1663 aa38.16■■■■□ 3.7
RAB40C-209ENST00000565511 ATP7AQ04656 1500 aa38.16■■■■□ 3.7
RAB40C-209ENST00000565511 PLEKHH2Q8IVE3 1493 aa38.15■■■■□ 3.7
RAB40C-209ENST00000565511 ZNF644Q9H582 1327 aaPredicted RBP38.13■■■■□ 3.7
RAB40C-209ENST00000565511 SPAG9O60271 1321 aaKnown RBP38.12■■■■□ 3.69
RAB40C-209ENST00000565511 SUPT6HQ7KZ85 1726 aaKnown RBP38.11■■■■□ 3.69
RAB40C-209ENST00000565511 PLXNC1O60486 1568 aa38.08■■■■□ 3.69
RAB40C-209ENST00000565511 MBD5Q9P267 1494 aa38.06■■■■□ 3.68
RAB40C-209ENST00000565511 NCOA2Q15596 1464 aa38.05■■■■□ 3.68
RAB40C-209ENST00000565511 VPS8Q8N3P4 1428 aa38.02■■■■□ 3.68
RAB40C-209ENST00000565511 SETD1BQ9UPS6 1966 aaKnown RBP38■■■■□ 3.67
RAB40C-209ENST00000565511 A2MP01023 1474 aa37.99■■■■□ 3.67
RAB40C-209ENST00000565511 STRCQ7RTU9 1775 aa37.96■■■■□ 3.67
RAB40C-209ENST00000565511 UHRF1BP1Q6BDS2 1440 aa37.95■■■■□ 3.67
RAB40C-209ENST00000565511 MROH2AA6NES4 1674 aa37.95■■■■□ 3.67
RAB40C-209ENST00000565511 ADGBQ8N7X0 1667 aa37.95■■■■□ 3.67
RAB40C-209ENST00000565511 CAMSAP2Q08AD1 1489 aa37.94■■■■□ 3.66
RAB40C-209ENST00000565511 CNTLNQ9NXG0 1405 aa37.94■■■■□ 3.66
RAB40C-209ENST00000565511 CLTCQ00610 1675 aaKnown RBP37.92■■■■□ 3.66
RAB40C-209ENST00000565511 LRRC9Q6ZRR7 1453 aa37.9■■■■□ 3.66
RAB40C-209ENST00000565511 ESF1Q9H501 851 aaKnown RBP37.89■■■■□ 3.66
RAB40C-209ENST00000565511 FBXO41Q8TF61 875 aa37.85■■■■□ 3.65
RAB40C-209ENST00000565511 CCDC141Q6ZP82 1450 aa37.84■■■■□ 3.65
RAB40C-209ENST00000565511 RTEL1-TNFRSF6BF6WH68 1400 aa37.84■■■■□ 3.65
RAB40C-209ENST00000565511 ZMYM3Q14202 1370 aa37.8■■■■□ 3.64
RAB40C-209ENST00000565511 KANK4Q5T7N3 995 aaPredicted RBP37.79■■■■□ 3.64
RAB40C-209ENST00000565511 ARHGEF5Q12774 1597 aa37.77■■■■□ 3.64
RAB40C-209ENST00000565511 MAP3K1Q13233 1512 aa37.77■■■■□ 3.64
RAB40C-209ENST00000565511 GGT6Q6P531 493 aa37.76■■■■□ 3.64
RAB40C-209ENST00000565511 NPATQ14207 1427 aa37.76■■■■□ 3.63
RAB40C-209ENST00000565511 DHX29Q7Z478 1369 aaKnown RBP37.73■■■■□ 3.63
RAB40C-209ENST00000565511 MYO3AQ8NEV4 1616 aa37.7■■■■□ 3.63
RAB40C-209ENST00000565511 PTPRKQ15262 1439 aa37.7■■■■□ 3.62
RAB40C-209ENST00000565511 NCOA1Q15788 1441 aa37.66■■■■□ 3.62
RAB40C-209ENST00000565511 ZNF142P52746 1687 aaPredicted RBP37.66■■■■□ 3.62
RAB40C-209ENST00000565511 CAMSAP1Q5T5Y3 1602 aa37.63■■■■□ 3.61
RAB40C-209ENST00000565511 CERKQ8TCT0 537 aa37.63■■■■□ 3.61
RAB40C-209ENST00000565511 MYOM3Q5VTT5 1437 aa37.61■■■■□ 3.61
RAB40C-209ENST00000565511 RSPH4AQ5TD94 716 aa37.6■■■■□ 3.61
RAB40C-209ENST00000565511 PTPRTO14522 1441 aa37.6■■■■□ 3.61
RAB40C-209ENST00000565511 MAST1Q9Y2H9 1570 aa37.59■■■■□ 3.61
RAB40C-209ENST00000565511 KIF3BO15066 747 aa37.58■■■■□ 3.61
RAB40C-209ENST00000565511 CEP170BQ9Y4F5 1589 aaPredicted RBP37.58■■■■□ 3.61
RAB40C-209ENST00000565511 PPP6R1Q9UPN7 881 aa37.57■■■■□ 3.6
RAB40C-209ENST00000565511 DMRT2Q9Y5R5 561 aa37.55■■■■□ 3.6
RAB40C-209ENST00000565511 KDM5DQ9BY66 1539 aa37.55■■■■□ 3.6
RAB40C-209ENST00000565511 MIA2Q96PC5 1412 aa37.53■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms