RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KIF14Q15058 1648 aa28.06■■■□□ 2.08
CLN3-216ENST00000565316 MADDQ8WXG6 1647 aa28.06■■■□□ 2.08
CLN3-216ENST00000565316 MYO5CQ9NQX4 1742 aa28.04■■■□□ 2.08
CLN3-216ENST00000565316 CASKIN1Q8WXD9 1431 aa28.03■■■□□ 2.08
CLN3-216ENST00000565316 CLIP1P30622 1438 aa28.02■■■□□ 2.08
CLN3-216ENST00000565316 LRRIQ1Q96JM4 1722 aa28.02■■■□□ 2.08
CLN3-216ENST00000565316 ILDR1Q86SU0 546 aaPredicted RBP27.98■■■□□ 2.07
CLN3-216ENST00000565316 SIGLEC1Q9BZZ2 1709 aa27.97■■■□□ 2.07
CLN3-216ENST00000565316 CCDC18Q5T9S5 1454 aa27.96■■■□□ 2.07
CLN3-216ENST00000565316 PCF11O94913 1555 aaKnown RBP27.96■■■□□ 2.07
CLN3-216ENST00000565316 ARHGAP5Q13017 1502 aa27.94■■■□□ 2.06
CLN3-216ENST00000565316 ATP10AO60312 1499 aa27.94■■■□□ 2.06
CLN3-216ENST00000565316 RIMS1Q86UR5 1692 aaKnown RBP27.93■■■□□ 2.06
CLN3-216ENST00000565316 ZNF518AQ6AHZ1 1483 aa27.92■■■□□ 2.06
CLN3-216ENST00000565316 FYCO1Q9BQS8 1478 aa27.9■■■□□ 2.06
CLN3-216ENST00000565316 KDM5CP41229 1560 aa27.89■■■□□ 2.05
CLN3-216ENST00000565316 C9orf84Q5VXU9 1444 aa27.89■■■□□ 2.05
CLN3-216ENST00000565316 AFAP1Q8N556 730 aa27.89■■■□□ 2.05
CLN3-216ENST00000565316 LMTK3Q96Q04 1460 aa27.88■■■□□ 2.05
CLN3-216ENST00000565316 CDC42BPBQ9Y5S2 1711 aa27.86■■■□□ 2.05
CLN3-216ENST00000565316 MLECQ14165 292 aa27.85■■■□□ 2.05
CLN3-216ENST00000565316 PREX2Q70Z35 1606 aa27.84■■■□□ 2.05
CLN3-216ENST00000565316 ARHGEF12Q9NZN5 1544 aa27.84■■■□□ 2.05
CLN3-216ENST00000565316 MLH3Q9UHC1 1453 aa27.8■■■□□ 2.04
CLN3-216ENST00000565316 ABCC1P33527 1531 aa27.79■■■□□ 2.04
CLN3-216ENST00000565316 FER1L4A9Z1Z3 1794 aa27.78■■■□□ 2.04
CLN3-216ENST00000565316 TRAPPC8Q9Y2L5 1435 aa27.78■■■□□ 2.04
CLN3-216ENST00000565316 DIP2CQ9Y2E4 1556 aa27.76■■■□□ 2.03
CLN3-216ENST00000565316 REREQ9P2R6 1566 aa27.75■■■□□ 2.03
CLN3-216ENST00000565316 PLPPR3Q6T4P5 718 aa27.74■■■□□ 2.03
CLN3-216ENST00000565316 CDC42BPAQ5VT25 1732 aa27.74■■■□□ 2.03
CLN3-216ENST00000565316 ITSN2Q9NZM3 1697 aa27.72■■■□□ 2.03
CLN3-216ENST00000565316 MYT1LQ9UL68 1186 aa27.71■■■□□ 2.03
CLN3-216ENST00000565316 GPATCH8Q9UKJ3 1502 aaKnown RBP27.71■■■□□ 2.03
CLN3-216ENST00000565316 ABCA6Q8N139 1617 aa27.7■■■□□ 2.03
CLN3-216ENST00000565316 HSPA2P54652 639 aa27.69■■■□□ 2.02
CLN3-216ENST00000565316 AGLP35573 1532 aa27.68■■■□□ 2.02
CLN3-216ENST00000565316 SAMD9LQ8IVG5 1584 aa27.64■■■□□ 2.01
CLN3-216ENST00000565316 CEBPAP49715 358 aaPredicted RBP27.64■■■□□ 2.01
CLN3-216ENST00000565316 KIDINS220Q9ULH0 1771 aa27.63■■■□□ 2.01
CLN3-216ENST00000565316 ZNF777Q9ULD5 760 aaPredicted RBP27.63■■■□□ 2.01
CLN3-216ENST00000565316 FBXO41Q8TF61 875 aa27.62■■■□□ 2.01
CLN3-216ENST00000565316 KIAA1107Q9UPP5 1409 aa27.61■■■□□ 2.01
CLN3-216ENST00000565316 MTUS2Q5JR59 1369 aa27.6■■■□□ 2.01
CLN3-216ENST00000565316 SYCP2Q9BX26 1530 aa27.59■■■□□ 2.01
CLN3-216ENST00000565316 CCNB3Q8WWL7 1395 aa27.59■■■□□ 2.01
CLN3-216ENST00000565316 CFDP1Q9UEE9 299 aaPredicted RBP27.59■■■□□ 2.01
CLN3-216ENST00000565316 PLEKHH2Q8IVE3 1493 aa27.58■■■□□ 2.01
CLN3-216ENST00000565316 HNRNPMP52272 730 aaKnown RBP eCLIP27.58■■■□□ 2.01
CLN3-216ENST00000565316 CEP162Q5TB80 1403 aa27.58■■■□□ 2.01
CLN3-216ENST00000565316 PREX1Q8TCU6 1659 aa27.57■■■□□ 2
CLN3-216ENST00000565316 SPAG9O60271 1321 aaKnown RBP27.57■■■□□ 2
CLN3-216ENST00000565316 SETD1BQ9UPS6 1966 aaKnown RBP27.51■■□□□ 1.99
CLN3-216ENST00000565316 EHBP1L1Q8N3D4 1523 aa27.51■■□□□ 1.99
CLN3-216ENST00000565316 ESF1Q9H501 851 aaKnown RBP27.5■■□□□ 1.99
CLN3-216ENST00000565316 CNTLNQ9NXG0 1405 aa27.5■■□□□ 1.99
CLN3-216ENST00000565316 UHRF1BP1Q6BDS2 1440 aa27.49■■□□□ 1.99
CLN3-216ENST00000565316 ATP7AQ04656 1500 aa27.49■■□□□ 1.99
CLN3-216ENST00000565316 C3P01024 1663 aa27.48■■□□□ 1.99
CLN3-216ENST00000565316 TIAM1Q13009 1591 aa27.48■■□□□ 1.99
CLN3-216ENST00000565316 INO80Q9ULG1 1556 aaPredicted RBP27.47■■□□□ 1.99
CLN3-216ENST00000565316 ZNF644Q9H582 1327 aaPredicted RBP27.45■■□□□ 1.98
CLN3-216ENST00000565316 PLXNC1O60486 1568 aa27.44■■□□□ 1.98
CLN3-216ENST00000565316 MBD5Q9P267 1494 aa27.43■■□□□ 1.98
CLN3-216ENST00000565316 A2MP01023 1474 aa27.42■■□□□ 1.98
CLN3-216ENST00000565316 DMRT2Q9Y5R5 561 aa27.4■■□□□ 1.98
CLN3-216ENST00000565316 STRCQ7RTU9 1775 aa27.39■■□□□ 1.97
CLN3-216ENST00000565316 MROH2AA6NES4 1674 aa27.38■■□□□ 1.97
CLN3-216ENST00000565316 CERKQ8TCT0 537 aa27.38■■□□□ 1.97
CLN3-216ENST00000565316 SUPT6HQ7KZ85 1726 aaKnown RBP27.38■■□□□ 1.97
CLN3-216ENST00000565316 ZMYM3Q14202 1370 aa27.38■■□□□ 1.97
CLN3-216ENST00000565316 NPATQ14207 1427 aa27.37■■□□□ 1.97
CLN3-216ENST00000565316 RTEL1-TNFRSF6BF6WH68 1400 aa27.36■■□□□ 1.97
CLN3-216ENST00000565316 NCOA2Q15596 1464 aa27.36■■□□□ 1.97
CLN3-216ENST00000565316 LOC105371045A0A1W2PR82 267 aa27.33■■□□□ 1.97
CLN3-216ENST00000565316 ADGBQ8N7X0 1667 aa27.32■■□□□ 1.96
CLN3-216ENST00000565316 PPP6R1Q9UPN7 881 aa27.32■■□□□ 1.96
CLN3-216ENST00000565316 PTPRTO14522 1441 aa27.3■■□□□ 1.96
CLN3-216ENST00000565316 VPS8Q8N3P4 1428 aa27.3■■□□□ 1.96
CLN3-216ENST00000565316 GGT6Q6P531 493 aa27.29■■□□□ 1.96
CLN3-216ENST00000565316 RSPH4AQ5TD94 716 aa27.28■■□□□ 1.96
CLN3-216ENST00000565316 DHX29Q7Z478 1369 aaKnown RBP27.28■■□□□ 1.96
CLN3-216ENST00000565316 CAMSAP2Q08AD1 1489 aa27.27■■□□□ 1.96
CLN3-216ENST00000565316 CLTCQ00610 1675 aaKnown RBP27.27■■□□□ 1.96
CLN3-216ENST00000565316 NCOA1Q15788 1441 aa27.27■■□□□ 1.96
CLN3-216ENST00000565316 CCDC141Q6ZP82 1450 aa27.27■■□□□ 1.96
CLN3-216ENST00000565316 PTPRKQ15262 1439 aa27.25■■□□□ 1.95
CLN3-216ENST00000565316 LRRC9Q6ZRR7 1453 aa27.24■■□□□ 1.95
CLN3-216ENST00000565316 MAP3K1Q13233 1512 aa27.2■■□□□ 1.94
CLN3-216ENST00000565316 ARHGEF5Q12774 1597 aa27.19■■□□□ 1.94
CLN3-216ENST00000565316 CAMSAP1Q5T5Y3 1602 aa27.18■■□□□ 1.94
CLN3-216ENST00000565316 MYO3AQ8NEV4 1616 aa27.15■■□□□ 1.94
CLN3-216ENST00000565316 KIF3BO15066 747 aa27.15■■□□□ 1.94
CLN3-216ENST00000565316 KANK4Q5T7N3 995 aaPredicted RBP27.15■■□□□ 1.94
CLN3-216ENST00000565316 ZNF142P52746 1687 aaPredicted RBP27.15■■□□□ 1.94
CLN3-216ENST00000565316 TSPY4P0CV99 314 aa27.14■■□□□ 1.93
CLN3-216ENST00000565316 TSPY10P0CW01 314 aa27.14■■□□□ 1.93
CLN3-216ENST00000565316 FAM135AQ9P2D6 1515 aa27.13■■□□□ 1.93
CLN3-216ENST00000565316 CEP170BQ9Y4F5 1589 aaPredicted RBP27.12■■□□□ 1.93
CLN3-216ENST00000565316 PLA2R1Q13018 1463 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 205.4 ms