RNA–Protein interactions for RNA: ENST00000565151.1

USB1-210, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 886 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-210ENST00000565151 CDC42BPAQ5VT25 1732 aa23.98■■□□□ 1.43
USB1-210ENST00000565151 CDK11AQ9UQ88 783 aaPredicted RBP23.98■■□□□ 1.43
USB1-210ENST00000565151 SCAPERQ9BY12 1400 aa23.98■■□□□ 1.43
USB1-210ENST00000565151 CCDC18Q5T9S5 1454 aa23.98■■□□□ 1.43
USB1-210ENST00000565151 POGZQ7Z3K3 1410 aa23.96■■□□□ 1.43
USB1-210ENST00000565151 PREX2Q70Z35 1606 aa23.95■■□□□ 1.43
USB1-210ENST00000565151 HECW2Q9P2P5 1572 aa23.95■■□□□ 1.43
USB1-210ENST00000565151 MADDQ8WXG6 1647 aa23.95■■□□□ 1.42
USB1-210ENST00000565151 ZFYVE16Q7Z3T8 1539 aa23.94■■□□□ 1.42
USB1-210ENST00000565151 ARHGAP5Q13017 1502 aa23.93■■□□□ 1.42
USB1-210ENST00000565151 EFCAB2Q5VUJ9 269 aa23.92■■□□□ 1.42
USB1-210ENST00000565151 PTPRMP28827 1452 aa23.89■■□□□ 1.42
USB1-210ENST00000565151 MAGI2Q86UL8 1455 aa23.89■■□□□ 1.42
USB1-210ENST00000565151 ARHGEF12Q9NZN5 1544 aa23.89■■□□□ 1.41
USB1-210ENST00000565151 RIMS1Q86UR5 1692 aaKnown RBP23.88■■□□□ 1.41
USB1-210ENST00000565151 KDM5CP41229 1560 aa23.87■■□□□ 1.41
USB1-210ENST00000565151 ITSN2Q9NZM3 1697 aa23.86■■□□□ 1.41
USB1-210ENST00000565151 CEP162Q5TB80 1403 aa23.86■■□□□ 1.41
USB1-210ENST00000565151 ARID4BQ4LE39 1312 aaPredicted RBP23.84■■□□□ 1.41
USB1-210ENST00000565151 ABCC1P33527 1531 aa23.84■■□□□ 1.41
USB1-210ENST00000565151 AFAP1Q8N556 730 aa23.84■■□□□ 1.41
USB1-210ENST00000565151 LOC105371045A0A1W2PR82 267 aa23.82■■□□□ 1.4
USB1-210ENST00000565151 ZNF518AQ6AHZ1 1483 aa23.81■■□□□ 1.4
USB1-210ENST00000565151 TRAPPC8Q9Y2L5 1435 aa23.81■■□□□ 1.4
USB1-210ENST00000565151 SAMD9LQ8IVG5 1584 aa23.81■■□□□ 1.4
USB1-210ENST00000565151 ABCA6Q8N139 1617 aa23.8■■□□□ 1.4
USB1-210ENST00000565151 ATP10AO60312 1499 aa23.8■■□□□ 1.4
USB1-210ENST00000565151 GPATCH8Q9UKJ3 1502 aaKnown RBP23.79■■□□□ 1.4
USB1-210ENST00000565151 DIP2CQ9Y2E4 1556 aa23.79■■□□□ 1.4
USB1-210ENST00000565151 FER1L4A9Z1Z3 1794 aa23.79■■□□□ 1.4
USB1-210ENST00000565151 KIDINS220Q9ULH0 1771 aa23.78■■□□□ 1.4
USB1-210ENST00000565151 C9orf84Q5VXU9 1444 aa23.75■■□□□ 1.39
USB1-210ENST00000565151 MLH3Q9UHC1 1453 aa23.74■■□□□ 1.39
USB1-210ENST00000565151 TIAM1Q13009 1591 aa23.71■■□□□ 1.39
USB1-210ENST00000565151 SYCP2Q9BX26 1530 aa23.71■■□□□ 1.39
USB1-210ENST00000565151 MLECQ14165 292 aa23.71■■□□□ 1.39
USB1-210ENST00000565151 REREQ9P2R6 1566 aa23.7■■□□□ 1.38
USB1-210ENST00000565151 MTUS2Q5JR59 1369 aa23.68■■□□□ 1.38
USB1-210ENST00000565151 EHBP1L1Q8N3D4 1523 aa23.68■■□□□ 1.38
USB1-210ENST00000565151 LMTK3Q96Q04 1460 aa23.68■■□□□ 1.38
USB1-210ENST00000565151 ZNF777Q9ULD5 760 aaPredicted RBP23.66■■□□□ 1.38
USB1-210ENST00000565151 HNRNPMP52272 730 aaKnown RBP eCLIP23.65■■□□□ 1.38
USB1-210ENST00000565151 CCNB3Q8WWL7 1395 aa23.63■■□□□ 1.37
USB1-210ENST00000565151 ZNF644Q9H582 1327 aaPredicted RBP23.61■■□□□ 1.37
USB1-210ENST00000565151 PLPPR3Q6T4P5 718 aa23.61■■□□□ 1.37
USB1-210ENST00000565151 INO80Q9ULG1 1556 aaPredicted RBP23.61■■□□□ 1.37
USB1-210ENST00000565151 AGLP35573 1532 aa23.6■■□□□ 1.37
USB1-210ENST00000565151 CFDP1Q9UEE9 299 aaPredicted RBP23.6■■□□□ 1.37
USB1-210ENST00000565151 MYT1LQ9UL68 1186 aa23.6■■□□□ 1.37
USB1-210ENST00000565151 KIAA1107Q9UPP5 1409 aa23.59■■□□□ 1.37
USB1-210ENST00000565151 SUPT6HQ7KZ85 1726 aaKnown RBP23.59■■□□□ 1.37
USB1-210ENST00000565151 VPS8Q8N3P4 1428 aa23.59■■□□□ 1.37
USB1-210ENST00000565151 C3P01024 1663 aa23.57■■□□□ 1.36
USB1-210ENST00000565151 NCOA2Q15596 1464 aa23.56■■□□□ 1.36
USB1-210ENST00000565151 MBD5Q9P267 1494 aa23.56■■□□□ 1.36
USB1-210ENST00000565151 ATP7AQ04656 1500 aa23.56■■□□□ 1.36
USB1-210ENST00000565151 CEBPAP49715 358 aaPredicted RBP23.56■■□□□ 1.36
USB1-210ENST00000565151 PLEKHH2Q8IVE3 1493 aa23.55■■□□□ 1.36
USB1-210ENST00000565151 SPAG9O60271 1321 aaKnown RBP23.53■■□□□ 1.36
USB1-210ENST00000565151 PLXNC1O60486 1568 aa23.52■■□□□ 1.36
USB1-210ENST00000565151 PREX1Q8TCU6 1659 aa23.52■■□□□ 1.36
USB1-210ENST00000565151 HSPA2P54652 639 aa23.52■■□□□ 1.36
USB1-210ENST00000565151 SETD1BQ9UPS6 1966 aaKnown RBP23.51■■□□□ 1.35
USB1-210ENST00000565151 LRRC9Q6ZRR7 1453 aa23.5■■□□□ 1.35
USB1-210ENST00000565151 ADGBQ8N7X0 1667 aa23.49■■□□□ 1.35
USB1-210ENST00000565151 KANK4Q5T7N3 995 aaPredicted RBP23.48■■□□□ 1.35
USB1-210ENST00000565151 CAMSAP2Q08AD1 1489 aa23.46■■□□□ 1.35
USB1-210ENST00000565151 MAP3K1Q13233 1512 aa23.45■■□□□ 1.34
USB1-210ENST00000565151 A2MP01023 1474 aa23.45■■□□□ 1.34
USB1-210ENST00000565151 ILDR1Q86SU0 546 aaPredicted RBP23.45■■□□□ 1.34
USB1-210ENST00000565151 STRCQ7RTU9 1775 aa23.43■■□□□ 1.34
USB1-210ENST00000565151 MROH2AA6NES4 1674 aa23.43■■□□□ 1.34
USB1-210ENST00000565151 CLTCQ00610 1675 aaKnown RBP23.43■■□□□ 1.34
USB1-210ENST00000565151 RTEL1-TNFRSF6BF6WH68 1400 aa23.38■■□□□ 1.33
USB1-210ENST00000565151 ARHGEF5Q12774 1597 aa23.38■■□□□ 1.33
USB1-210ENST00000565151 CCDC141Q6ZP82 1450 aa23.37■■□□□ 1.33
USB1-210ENST00000565151 CNTLNQ9NXG0 1405 aa23.34■■□□□ 1.33
USB1-210ENST00000565151 ZMYM3Q14202 1370 aa23.31■■□□□ 1.32
USB1-210ENST00000565151 DHX29Q7Z478 1369 aaKnown RBP23.31■■□□□ 1.32
USB1-210ENST00000565151 UHRF1BP1Q6BDS2 1440 aa23.31■■□□□ 1.32
USB1-210ENST00000565151 MYOM3Q5VTT5 1437 aa23.29■■□□□ 1.32
USB1-210ENST00000565151 GGT6Q6P531 493 aa23.29■■□□□ 1.32
USB1-210ENST00000565151 MAST1Q9Y2H9 1570 aa23.28■■□□□ 1.32
USB1-210ENST00000565151 ESF1Q9H501 851 aaKnown RBP23.28■■□□□ 1.32
USB1-210ENST00000565151 RSPH4AQ5TD94 716 aa23.25■■□□□ 1.31
USB1-210ENST00000565151 NPATQ14207 1427 aa23.25■■□□□ 1.31
USB1-210ENST00000565151 PTPRKQ15262 1439 aa23.25■■□□□ 1.31
USB1-210ENST00000565151 MIA2Q96PC5 1412 aa23.25■■□□□ 1.31
USB1-210ENST00000565151 MYO3AQ8NEV4 1616 aa23.24■■□□□ 1.31
USB1-210ENST00000565151 CROCC2H7BZ55 1655 aa23.22■■□□□ 1.31
USB1-210ENST00000565151 PTPN23Q9H3S7 1636 aa23.22■■□□□ 1.31
USB1-210ENST00000565151 ZNF142P52746 1687 aaPredicted RBP23.22■■□□□ 1.31
USB1-210ENST00000565151 KIF3BO15066 747 aa23.21■■□□□ 1.31
USB1-210ENST00000565151 RNF17Q9BXT8 1623 aaKnown RBP23.19■■□□□ 1.3
USB1-210ENST00000565151 TSPY4P0CV99 314 aa23.17■■□□□ 1.3
USB1-210ENST00000565151 TSPY10P0CW01 314 aa23.17■■□□□ 1.3
USB1-210ENST00000565151 PPP6R1Q9UPN7 881 aa23.17■■□□□ 1.3
USB1-210ENST00000565151 CAMSAP1Q5T5Y3 1602 aa23.17■■□□□ 1.3
USB1-210ENST00000565151 MROH1Q8NDA8 1641 aa23.17■■□□□ 1.3
USB1-210ENST00000565151 NCOA1Q15788 1441 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms