RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 ARHGAP5Q13017 1502 aa29.54■■■□□ 2.32
CLN3-214ENST00000565140 ZMYM4Q5VZL5 1548 aa29.51■■■□□ 2.32
CLN3-214ENST00000565140 CDC42BPAQ5VT25 1732 aa29.51■■■□□ 2.31
CLN3-214ENST00000565140 PREX2Q70Z35 1606 aa29.5■■■□□ 2.31
CLN3-214ENST00000565140 ARHGEF40Q8TER5 1519 aa29.5■■■□□ 2.31
CLN3-214ENST00000565140 POGZQ7Z3K3 1410 aa29.49■■■□□ 2.31
CLN3-214ENST00000565140 YEATS2Q9ULM3 1422 aa29.45■■■□□ 2.3
CLN3-214ENST00000565140 ZFYVE16Q7Z3T8 1539 aa29.43■■■□□ 2.3
CLN3-214ENST00000565140 MAGI2Q86UL8 1455 aa29.42■■■□□ 2.3
CLN3-214ENST00000565140 ADAMTSL3P82987 1691 aa29.41■■■□□ 2.3
CLN3-214ENST00000565140 BCORL1Q5H9F3 1711 aa29.4■■■□□ 2.3
CLN3-214ENST00000565140 SIGLEC1Q9BZZ2 1709 aa29.4■■■□□ 2.3
CLN3-214ENST00000565140 ARID4BQ4LE39 1312 aaPredicted RBP29.4■■■□□ 2.3
CLN3-214ENST00000565140 AFAP1Q8N556 730 aa29.39■■■□□ 2.3
CLN3-214ENST00000565140 MTUS2Q5JR59 1369 aa29.39■■■□□ 2.29
CLN3-214ENST00000565140 GPATCH8Q9UKJ3 1502 aaKnown RBP29.37■■■□□ 2.29
CLN3-214ENST00000565140 ZNF518AQ6AHZ1 1483 aa29.36■■■□□ 2.29
CLN3-214ENST00000565140 ARHGEF12Q9NZN5 1544 aa29.36■■■□□ 2.29
CLN3-214ENST00000565140 ABCC1P33527 1531 aa29.35■■■□□ 2.29
CLN3-214ENST00000565140 ITSN2Q9NZM3 1697 aa29.35■■■□□ 2.29
CLN3-214ENST00000565140 KDM5CP41229 1560 aa29.35■■■□□ 2.29
CLN3-214ENST00000565140 SAMD9LQ8IVG5 1584 aa29.31■■■□□ 2.28
CLN3-214ENST00000565140 TRAPPC8Q9Y2L5 1435 aa29.31■■■□□ 2.28
CLN3-214ENST00000565140 EHBP1L1Q8N3D4 1523 aa29.3■■■□□ 2.28
CLN3-214ENST00000565140 VPS8Q8N3P4 1428 aa29.3■■■□□ 2.28
CLN3-214ENST00000565140 ZNF777Q9ULD5 760 aaPredicted RBP29.3■■■□□ 2.28
CLN3-214ENST00000565140 MADDQ8WXG6 1647 aa29.3■■■□□ 2.28
CLN3-214ENST00000565140 ATP10AO60312 1499 aa29.29■■■□□ 2.28
CLN3-214ENST00000565140 CCNB3Q8WWL7 1395 aa29.28■■■□□ 2.28
CLN3-214ENST00000565140 HECW2Q9P2P5 1572 aa29.28■■■□□ 2.28
CLN3-214ENST00000565140 PTPRMP28827 1452 aa29.26■■■□□ 2.27
CLN3-214ENST00000565140 TIAM1Q13009 1591 aa29.26■■■□□ 2.27
CLN3-214ENST00000565140 CFDP1Q9UEE9 299 aaPredicted RBP29.25■■■□□ 2.27
CLN3-214ENST00000565140 MYT1LQ9UL68 1186 aa29.24■■■□□ 2.27
CLN3-214ENST00000565140 MLH3Q9UHC1 1453 aa29.23■■■□□ 2.27
CLN3-214ENST00000565140 C9orf84Q5VXU9 1444 aa29.23■■■□□ 2.27
CLN3-214ENST00000565140 RIMS1Q86UR5 1692 aaKnown RBP29.22■■■□□ 2.27
CLN3-214ENST00000565140 SYCP2Q9BX26 1530 aa29.22■■■□□ 2.27
CLN3-214ENST00000565140 DIP2CQ9Y2E4 1556 aa29.22■■■□□ 2.27
CLN3-214ENST00000565140 ABCA6Q8N139 1617 aa29.21■■■□□ 2.27
CLN3-214ENST00000565140 HNRNPMP52272 730 aaKnown RBP eCLIP29.21■■■□□ 2.27
CLN3-214ENST00000565140 KIDINS220Q9ULH0 1771 aa29.21■■■□□ 2.27
CLN3-214ENST00000565140 MLECQ14165 292 aa29.2■■■□□ 2.26
CLN3-214ENST00000565140 SUPT6HQ7KZ85 1726 aaKnown RBP29.2■■■□□ 2.26
CLN3-214ENST00000565140 NCOA2Q15596 1464 aa29.17■■■□□ 2.26
CLN3-214ENST00000565140 KIAA1107Q9UPP5 1409 aa29.16■■■□□ 2.26
CLN3-214ENST00000565140 ZNF644Q9H582 1327 aaPredicted RBP29.16■■■□□ 2.26
CLN3-214ENST00000565140 FER1L4A9Z1Z3 1794 aa29.15■■■□□ 2.26
CLN3-214ENST00000565140 PLEKHH2Q8IVE3 1493 aa29.14■■■□□ 2.26
CLN3-214ENST00000565140 LRRC9Q6ZRR7 1453 aa29.13■■■□□ 2.25
CLN3-214ENST00000565140 REREQ9P2R6 1566 aa29.13■■■□□ 2.25
CLN3-214ENST00000565140 MAP3K1Q13233 1512 aa29.1■■■□□ 2.25
CLN3-214ENST00000565140 KANK4Q5T7N3 995 aaPredicted RBP29.09■■■□□ 2.25
CLN3-214ENST00000565140 SPAG9O60271 1321 aaKnown RBP29.09■■■□□ 2.25
CLN3-214ENST00000565140 MBD5Q9P267 1494 aa29.05■■■□□ 2.24
CLN3-214ENST00000565140 ATP7AQ04656 1500 aa29.04■■■□□ 2.24
CLN3-214ENST00000565140 PLPPR3Q6T4P5 718 aa29.04■■■□□ 2.24
CLN3-214ENST00000565140 INO80Q9ULG1 1556 aaPredicted RBP29.04■■■□□ 2.24
CLN3-214ENST00000565140 AGLP35573 1532 aa29.03■■■□□ 2.24
CLN3-214ENST00000565140 CAMSAP2Q08AD1 1489 aa28.99■■■□□ 2.23
CLN3-214ENST00000565140 CEBPAP49715 358 aaPredicted RBP28.93■■■□□ 2.22
CLN3-214ENST00000565140 ADGBQ8N7X0 1667 aa28.93■■■□□ 2.22
CLN3-214ENST00000565140 LMTK3Q96Q04 1460 aa28.92■■■□□ 2.22
CLN3-214ENST00000565140 PLXNC1O60486 1568 aa28.92■■■□□ 2.22
CLN3-214ENST00000565140 A2MP01023 1474 aa28.91■■■□□ 2.22
CLN3-214ENST00000565140 APLP2Q06481 763 aa28.91■■■□□ 2.22
CLN3-214ENST00000565140 CCDC141Q6ZP82 1450 aa28.9■■■□□ 2.22
CLN3-214ENST00000565140 RTEL1-TNFRSF6BF6WH68 1400 aa28.89■■■□□ 2.22
CLN3-214ENST00000565140 ARHGEF5Q12774 1597 aa28.88■■■□□ 2.21
CLN3-214ENST00000565140 MYOM3Q5VTT5 1437 aa28.87■■■□□ 2.21
CLN3-214ENST00000565140 C3P01024 1663 aa28.87■■■□□ 2.21
CLN3-214ENST00000565140 RSPH4AQ5TD94 716 aa28.87■■■□□ 2.21
CLN3-214ENST00000565140 SETD1BQ9UPS6 1966 aaKnown RBP28.83■■■□□ 2.21
CLN3-214ENST00000565140 ESF1Q9H501 851 aaKnown RBP28.83■■■□□ 2.21
CLN3-214ENST00000565140 MIA2Q96PC5 1412 aa28.83■■■□□ 2.21
CLN3-214ENST00000565140 PREX1Q8TCU6 1659 aa28.8■■■□□ 2.2
CLN3-214ENST00000565140 HSPA2P54652 639 aa28.8■■■□□ 2.2
CLN3-214ENST00000565140 DHX29Q7Z478 1369 aaKnown RBP28.78■■■□□ 2.2
CLN3-214ENST00000565140 CNTLNQ9NXG0 1405 aa28.77■■■□□ 2.2
CLN3-214ENST00000565140 CLTCQ00610 1675 aaKnown RBP28.77■■■□□ 2.2
CLN3-214ENST00000565140 TSPY4P0CV99 314 aa28.77■■■□□ 2.2
CLN3-214ENST00000565140 TSPY10P0CW01 314 aa28.77■■■□□ 2.2
CLN3-214ENST00000565140 GGT6Q6P531 493 aa28.77■■■□□ 2.2
CLN3-214ENST00000565140 MROH2AA6NES4 1674 aa28.77■■■□□ 2.2
CLN3-214ENST00000565140 PTPN23Q9H3S7 1636 aa28.73■■■□□ 2.19
CLN3-214ENST00000565140 MAST1Q9Y2H9 1570 aa28.72■■■□□ 2.19
CLN3-214ENST00000565140 ZMYM3Q14202 1370 aa28.71■■■□□ 2.19
CLN3-214ENST00000565140 KIF3BO15066 747 aa28.68■■■□□ 2.18
CLN3-214ENST00000565140 FGD6Q6ZV73 1430 aa28.68■■■□□ 2.18
CLN3-214ENST00000565140 PPP6R1Q9UPN7 881 aa28.66■■■□□ 2.18
CLN3-214ENST00000565140 UHRF1BP1Q6BDS2 1440 aa28.66■■■□□ 2.18
CLN3-214ENST00000565140 CROCC2H7BZ55 1655 aa28.64■■■□□ 2.18
CLN3-214ENST00000565140 ABCC5O15440 1437 aa28.63■■■□□ 2.17
CLN3-214ENST00000565140 TCOF1Q13428 1488 aaKnown RBP28.63■■■□□ 2.17
CLN3-214ENST00000565140 NPATQ14207 1427 aa28.6■■■□□ 2.17
CLN3-214ENST00000565140 DNMT1P26358 1616 aaKnown RBP28.59■■■□□ 2.17
CLN3-214ENST00000565140 STRCQ7RTU9 1775 aa28.58■■■□□ 2.17
CLN3-214ENST00000565140 DAPK1P53355 1430 aa28.57■■■□□ 2.16
CLN3-214ENST00000565140 PTPRKQ15262 1439 aa28.57■■■□□ 2.16
CLN3-214ENST00000565140 SHANK2Q9UPX8 1470 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms