RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CFAP74Q9C0B2 1584 aa31.79■■■□□ 2.68
CLN3-212ENST00000564574 MIA2Q96PC5 1412 aa31.78■■■□□ 2.68
CLN3-212ENST00000564574 PPRC1Q5VV67 1664 aaKnown RBP31.78■■■□□ 2.68
CLN3-212ENST00000564574 ARHGAP5Q13017 1502 aa31.78■■■□□ 2.68
CLN3-212ENST00000564574 TEX14Q8IWB6 1497 aa31.75■■■□□ 2.67
CLN3-212ENST00000564574 CFDP1Q9UEE9 299 aaPredicted RBP31.73■■■□□ 2.67
CLN3-212ENST00000564574 FGD6Q6ZV73 1430 aa31.72■■■□□ 2.67
CLN3-212ENST00000564574 FANCAO15360 1455 aa31.72■■■□□ 2.67
CLN3-212ENST00000564574 EFCAB2Q5VUJ9 269 aa31.71■■■□□ 2.67
CLN3-212ENST00000564574 NEO1Q92859 1461 aa31.7■■■□□ 2.66
CLN3-212ENST00000564574 PTPN23Q9H3S7 1636 aa31.67■■■□□ 2.66
CLN3-212ENST00000564574 SAMD9LQ8IVG5 1584 aa31.66■■■□□ 2.66
CLN3-212ENST00000564574 TCOF1Q13428 1488 aaKnown RBP31.65■■■□□ 2.66
CLN3-212ENST00000564574 RRBP1Q9P2E9 1410 aaKnown RBP31.64■■■□□ 2.66
CLN3-212ENST00000564574 PLEKHH2Q8IVE3 1493 aa31.64■■■□□ 2.66
CLN3-212ENST00000564574 CAMSAP2Q08AD1 1489 aa31.63■■■□□ 2.65
CLN3-212ENST00000564574 AKNAQ7Z591 1439 aa31.62■■■□□ 2.65
CLN3-212ENST00000564574 ZNF777Q9ULD5 760 aaPredicted RBP31.6■■■□□ 2.65
CLN3-212ENST00000564574 ABCC1P33527 1531 aa31.59■■■□□ 2.65
CLN3-212ENST00000564574 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.57■■■□□ 2.64
CLN3-212ENST00000564574 ADGRL1O94910 1474 aa31.57■■■□□ 2.64
CLN3-212ENST00000564574 KIAA1107Q9UPP5 1409 aa31.57■■■□□ 2.64
CLN3-212ENST00000564574 ZNF644Q9H582 1327 aaPredicted RBP31.53■■■□□ 2.64
CLN3-212ENST00000564574 SYCP2Q9BX26 1530 aa31.52■■■□□ 2.64
CLN3-212ENST00000564574 ARHGEF5Q12774 1597 aa31.51■■■□□ 2.64
CLN3-212ENST00000564574 SCAPERQ9BY12 1400 aa31.49■■■□□ 2.63
CLN3-212ENST00000564574 FAM50AQ14320 339 aaKnown RBP31.48■■■□□ 2.63
CLN3-212ENST00000564574 ARHGEF12Q9NZN5 1544 aa31.48■■■□□ 2.63
CLN3-212ENST00000564574 MBD5Q9P267 1494 aa31.47■■■□□ 2.63
CLN3-212ENST00000564574 DNMT1P26358 1616 aaKnown RBP31.46■■■□□ 2.63
CLN3-212ENST00000564574 RSPH4AQ5TD94 716 aa31.46■■■□□ 2.63
CLN3-212ENST00000564574 AEBP2Q6ZN18 517 aaPredicted RBP31.46■■■□□ 2.63
CLN3-212ENST00000564574 DENND4BO75064 1496 aaPredicted RBP31.46■■■□□ 2.63
CLN3-212ENST00000564574 RICTORQ6R327 1708 aa31.44■■■□□ 2.62
CLN3-212ENST00000564574 HNRNPMP52272 730 aaKnown RBP eCLIP31.43■■■□□ 2.62
CLN3-212ENST00000564574 CCDC141Q6ZP82 1450 aa31.43■■■□□ 2.62
CLN3-212ENST00000564574 POGZQ7Z3K3 1410 aa31.42■■■□□ 2.62
CLN3-212ENST00000564574 CROCC2H7BZ55 1655 aa31.41■■■□□ 2.62
CLN3-212ENST00000564574 ZNF518AQ6AHZ1 1483 aa31.41■■■□□ 2.62
CLN3-212ENST00000564574 TRAPPC8Q9Y2L5 1435 aa31.4■■■□□ 2.62
CLN3-212ENST00000564574 KDM6BO15054 1643 aa31.39■■■□□ 2.62
CLN3-212ENST00000564574 DAPK1P53355 1430 aa31.38■■■□□ 2.61
CLN3-212ENST00000564574 KDM5CP41229 1560 aa31.37■■■□□ 2.61
CLN3-212ENST00000564574 FRMPD1Q5SYB0 1578 aa31.36■■■□□ 2.61
CLN3-212ENST00000564574 ABCC5O15440 1437 aa31.36■■■□□ 2.61
CLN3-212ENST00000564574 SHANK2Q9UPX8 1470 aa31.35■■■□□ 2.61
CLN3-212ENST00000564574 COL17A1Q9UMD9 1497 aaPredicted RBP31.34■■■□□ 2.61
CLN3-212ENST00000564574 MAST1Q9Y2H9 1570 aa31.34■■■□□ 2.61
CLN3-212ENST00000564574 TRIM26Q12899 539 aaPredicted RBP31.32■■■□□ 2.6
CLN3-212ENST00000564574 ZMYM4Q5VZL5 1548 aa31.31■■■□□ 2.6
CLN3-212ENST00000564574 TSPY4P0CV99 314 aa31.3■■■□□ 2.6
CLN3-212ENST00000564574 TSPY10P0CW01 314 aa31.3■■■□□ 2.6
CLN3-212ENST00000564574 AFAP1Q8N556 730 aa31.3■■■□□ 2.6
CLN3-212ENST00000564574 RAPGEF3O95398 923 aa31.29■■■□□ 2.6
CLN3-212ENST00000564574 HECW2Q9P2P5 1572 aa31.29■■■□□ 2.6
CLN3-212ENST00000564574 ADGBQ8N7X0 1667 aa31.29■■■□□ 2.6
CLN3-212ENST00000564574 INO80Q9ULG1 1556 aaPredicted RBP31.28■■■□□ 2.6
CLN3-212ENST00000564574 RTEL1-TNFRSF6BF6WH68 1400 aa31.27■■■□□ 2.6
CLN3-212ENST00000564574 MLH3Q9UHC1 1453 aa31.27■■■□□ 2.6
CLN3-212ENST00000564574 C9orf84Q5VXU9 1444 aa31.26■■■□□ 2.6
CLN3-212ENST00000564574 SPAG9O60271 1321 aaKnown RBP31.25■■■□□ 2.59
CLN3-212ENST00000564574 MAGI2Q86UL8 1455 aa31.25■■■□□ 2.59
CLN3-212ENST00000564574 ATP7AQ04656 1500 aa31.24■■■□□ 2.59
CLN3-212ENST00000564574 ZFYVE16Q7Z3T8 1539 aa31.24■■■□□ 2.59
CLN3-212ENST00000564574 PTPRKQ15262 1439 aa31.24■■■□□ 2.59
CLN3-212ENST00000564574 KIDINS220Q9ULH0 1771 aa31.23■■■□□ 2.59
CLN3-212ENST00000564574 ITGAEP38570 1179 aa31.23■■■□□ 2.59
CLN3-212ENST00000564574 ADGRL2O95490 1459 aa31.22■■■□□ 2.59
CLN3-212ENST00000564574 PLXNC1O60486 1568 aa31.21■■■□□ 2.59
CLN3-212ENST00000564574 ROCK1Q13464 1354 aa31.18■■■□□ 2.58
CLN3-212ENST00000564574 ANKRD30AQ9BXX3 1397 aa31.16■■■□□ 2.58
CLN3-212ENST00000564574 CHIC2Q9UKJ5 165 aa31.15■■■□□ 2.58
CLN3-212ENST00000564574 MYT1LQ9UL68 1186 aa31.15■■■□□ 2.58
CLN3-212ENST00000564574 NCOA1Q15788 1441 aa31.13■■■□□ 2.57
CLN3-212ENST00000564574 ABCA6Q8N139 1617 aa31.13■■■□□ 2.57
CLN3-212ENST00000564574 ARHGEF40Q8TER5 1519 aa31.12■■■□□ 2.57
CLN3-212ENST00000564574 DIP2CQ9Y2E4 1556 aa31.12■■■□□ 2.57
CLN3-212ENST00000564574 GCC2Q8IWJ2 1684 aa31.08■■■□□ 2.57
CLN3-212ENST00000564574 YEATS2Q9ULM3 1422 aa31.07■■■□□ 2.57
CLN3-212ENST00000564574 DUOX2Q9NRD8 1548 aa31.06■■■□□ 2.56
CLN3-212ENST00000564574 KIF15Q9NS87 1388 aa31.05■■■□□ 2.56
CLN3-212ENST00000564574 REREQ9P2R6 1566 aa31.05■■■□□ 2.56
CLN3-212ENST00000564574 ATP10AO60312 1499 aa31.04■■■□□ 2.56
CLN3-212ENST00000564574 HFM1A2PYH4 1435 aa31.04■■■□□ 2.56
CLN3-212ENST00000564574 RRP7BPQ9NSQ0 103 aa31.02■■■□□ 2.56
CLN3-212ENST00000564574 A2MP01023 1474 aa31.01■■■□□ 2.56
CLN3-212ENST00000564574 NAIPQ13075 1403 aa30.99■■■□□ 2.55
CLN3-212ENST00000564574 DHX29Q7Z478 1369 aaKnown RBP30.99■■■□□ 2.55
CLN3-212ENST00000564574 ERBINQ96RT1 1412 aa30.98■■■□□ 2.55
CLN3-212ENST00000564574 EIF2AK4Q9P2K8 1649 aaKnown RBP30.97■■■□□ 2.55
CLN3-212ENST00000564574 BCORL1Q5H9F3 1711 aa30.94■■■□□ 2.54
CLN3-212ENST00000564574 PCGF6Q9BYE7 350 aa30.94■■■□□ 2.54
CLN3-212ENST00000564574 ANKRD50Q9ULJ7 1429 aa30.94■■■□□ 2.54
CLN3-212ENST00000564574 SETD5Q9C0A6 1442 aa30.92■■■□□ 2.54
CLN3-212ENST00000564574 AGLP35573 1532 aa30.92■■■□□ 2.54
CLN3-212ENST00000564574 KDM4FA0A1W2PPD8 638 aa30.91■■■□□ 2.54
CLN3-212ENST00000564574 SIGLEC1Q9BZZ2 1709 aa30.85■■■□□ 2.53
CLN3-212ENST00000564574 ACIN1Q9UKV3 1341 aaKnown RBP30.83■■■□□ 2.53
CLN3-212ENST00000564574 RNF17Q9BXT8 1623 aaKnown RBP30.83■■■□□ 2.53
CLN3-212ENST00000564574 DEPDC5O75140 1603 aa30.81■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms