RNA–Protein interactions for RNA: ENST00000564252.1

NME3-206, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 599 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-206ENST00000564252 POGZQ7Z3K3 1410 aa39.14■■■■□ 3.86
NME3-206ENST00000564252 YEATS2Q9ULM3 1422 aa39.13■■■■□ 3.85
NME3-206ENST00000564252 MAGI2Q86UL8 1455 aa39.12■■■■□ 3.85
NME3-206ENST00000564252 PCF11O94913 1555 aaKnown RBP39.08■■■■□ 3.85
NME3-206ENST00000564252 CLIP1P30622 1438 aa39.08■■■■□ 3.85
NME3-206ENST00000564252 EFCAB2Q5VUJ9 269 aa39.08■■■■□ 3.85
NME3-206ENST00000564252 CASKIN1Q8WXD9 1431 aa39.07■■■■□ 3.85
NME3-206ENST00000564252 SIGLEC1Q9BZZ2 1709 aa39.07■■■■□ 3.85
NME3-206ENST00000564252 RIMS1Q86UR5 1692 aaKnown RBP39.01■■■■□ 3.84
NME3-206ENST00000564252 CCDC18Q5T9S5 1454 aa39.01■■■■□ 3.84
NME3-206ENST00000564252 ARHGAP5Q13017 1502 aa38.99■■■■□ 3.83
NME3-206ENST00000564252 CDC42BPBQ9Y5S2 1711 aa38.93■■■■□ 3.82
NME3-206ENST00000564252 ZNF518AQ6AHZ1 1483 aa38.92■■■■□ 3.82
NME3-206ENST00000564252 FYCO1Q9BQS8 1478 aa38.92■■■■□ 3.82
NME3-206ENST00000564252 ILDR1Q86SU0 546 aaPredicted RBP38.92■■■■□ 3.82
NME3-206ENST00000564252 ATP10AO60312 1499 aa38.91■■■■□ 3.82
NME3-206ENST00000564252 KDM5CP41229 1560 aa38.89■■■■□ 3.82
NME3-206ENST00000564252 PREX2Q70Z35 1606 aa38.89■■■■□ 3.82
NME3-206ENST00000564252 C9orf84Q5VXU9 1444 aa38.87■■■■□ 3.81
NME3-206ENST00000564252 LMTK3Q96Q04 1460 aa38.85■■■■□ 3.81
NME3-206ENST00000564252 AFAP1Q8N556 730 aa38.84■■■■□ 3.81
NME3-206ENST00000564252 MLECQ14165 292 aa38.83■■■■□ 3.81
NME3-206ENST00000564252 FER1L4A9Z1Z3 1794 aa38.82■■■■□ 3.8
NME3-206ENST00000564252 ABCC1P33527 1531 aa38.79■■■■□ 3.8
NME3-206ENST00000564252 ARHGEF12Q9NZN5 1544 aa38.79■■■■□ 3.8
NME3-206ENST00000564252 CDC42BPAQ5VT25 1732 aa38.77■■■■□ 3.8
NME3-206ENST00000564252 DIP2CQ9Y2E4 1556 aa38.74■■■■□ 3.79
NME3-206ENST00000564252 ITSN2Q9NZM3 1697 aa38.73■■■■□ 3.79
NME3-206ENST00000564252 TRAPPC8Q9Y2L5 1435 aa38.72■■■■□ 3.79
NME3-206ENST00000564252 PLPPR3Q6T4P5 718 aa38.72■■■■□ 3.79
NME3-206ENST00000564252 MLH3Q9UHC1 1453 aa38.72■■■■□ 3.79
NME3-206ENST00000564252 ABCA6Q8N139 1617 aa38.69■■■■□ 3.78
NME3-206ENST00000564252 REREQ9P2R6 1566 aa38.69■■■■□ 3.78
NME3-206ENST00000564252 MYT1LQ9UL68 1186 aa38.67■■■■□ 3.78
NME3-206ENST00000564252 GPATCH8Q9UKJ3 1502 aaKnown RBP38.63■■■■□ 3.77
NME3-206ENST00000564252 SAMD9LQ8IVG5 1584 aa38.61■■■■□ 3.77
NME3-206ENST00000564252 KIDINS220Q9ULH0 1771 aa38.58■■■■□ 3.77
NME3-206ENST00000564252 HSPA2P54652 639 aa38.58■■■■□ 3.77
NME3-206ENST00000564252 AGLP35573 1532 aa38.55■■■■□ 3.76
NME3-206ENST00000564252 ZNF777Q9ULD5 760 aaPredicted RBP38.54■■■■□ 3.76
NME3-206ENST00000564252 SYCP2Q9BX26 1530 aa38.53■■■■□ 3.76
NME3-206ENST00000564252 CEBPAP49715 358 aaPredicted RBP38.51■■■■□ 3.76
NME3-206ENST00000564252 CEP162Q5TB80 1403 aa38.5■■■■□ 3.75
NME3-206ENST00000564252 MTUS2Q5JR59 1369 aa38.5■■■■□ 3.75
NME3-206ENST00000564252 PREX1Q8TCU6 1659 aa38.49■■■■□ 3.75
NME3-206ENST00000564252 CCNB3Q8WWL7 1395 aa38.46■■■■□ 3.75
NME3-206ENST00000564252 HNRNPMP52272 730 aaKnown RBP eCLIP38.44■■■■□ 3.74
NME3-206ENST00000564252 CFDP1Q9UEE9 299 aaPredicted RBP38.44■■■■□ 3.74
NME3-206ENST00000564252 KIAA1107Q9UPP5 1409 aa38.44■■■■□ 3.74
NME3-206ENST00000564252 PLEKHH2Q8IVE3 1493 aa38.42■■■■□ 3.74
NME3-206ENST00000564252 EHBP1L1Q8N3D4 1523 aa38.41■■■■□ 3.74
NME3-206ENST00000564252 SPAG9O60271 1321 aaKnown RBP38.39■■■■□ 3.74
NME3-206ENST00000564252 FBXO41Q8TF61 875 aa38.39■■■■□ 3.74
NME3-206ENST00000564252 C3P01024 1663 aa38.39■■■■□ 3.74
NME3-206ENST00000564252 TIAM1Q13009 1591 aa38.38■■■■□ 3.73
NME3-206ENST00000564252 ATP7AQ04656 1500 aa38.36■■■■□ 3.73
NME3-206ENST00000564252 INO80Q9ULG1 1556 aaPredicted RBP38.36■■■■□ 3.73
NME3-206ENST00000564252 SETD1BQ9UPS6 1966 aaKnown RBP38.33■■■■□ 3.73
NME3-206ENST00000564252 UHRF1BP1Q6BDS2 1440 aa38.31■■■■□ 3.72
NME3-206ENST00000564252 ESF1Q9H501 851 aaKnown RBP38.31■■■■□ 3.72
NME3-206ENST00000564252 CNTLNQ9NXG0 1405 aa38.29■■■■□ 3.72
NME3-206ENST00000564252 PLXNC1O60486 1568 aa38.27■■■■□ 3.72
NME3-206ENST00000564252 SUPT6HQ7KZ85 1726 aaKnown RBP38.27■■■■□ 3.72
NME3-206ENST00000564252 ZNF644Q9H582 1327 aaPredicted RBP38.26■■■■□ 3.72
NME3-206ENST00000564252 A2MP01023 1474 aa38.23■■■■□ 3.71
NME3-206ENST00000564252 MBD5Q9P267 1494 aa38.23■■■■□ 3.71
NME3-206ENST00000564252 MROH2AA6NES4 1674 aa38.21■■■■□ 3.71
NME3-206ENST00000564252 STRCQ7RTU9 1775 aa38.21■■■■□ 3.71
NME3-206ENST00000564252 NCOA2Q15596 1464 aa38.17■■■■□ 3.7
NME3-206ENST00000564252 ADGBQ8N7X0 1667 aa38.16■■■■□ 3.7
NME3-206ENST00000564252 LOC105371045A0A1W2PR82 267 aa38.14■■■■□ 3.7
NME3-206ENST00000564252 ZMYM3Q14202 1370 aa38.11■■■■□ 3.69
NME3-206ENST00000564252 RTEL1-TNFRSF6BF6WH68 1400 aa38.11■■■■□ 3.69
NME3-206ENST00000564252 NPATQ14207 1427 aa38.1■■■■□ 3.69
NME3-206ENST00000564252 VPS8Q8N3P4 1428 aa38.1■■■■□ 3.69
NME3-206ENST00000564252 CLTCQ00610 1675 aaKnown RBP38.1■■■■□ 3.69
NME3-206ENST00000564252 CERKQ8TCT0 537 aa38.08■■■■□ 3.69
NME3-206ENST00000564252 DMRT2Q9Y5R5 561 aa38.08■■■■□ 3.69
NME3-206ENST00000564252 CAMSAP2Q08AD1 1489 aa38.07■■■■□ 3.68
NME3-206ENST00000564252 GGT6Q6P531 493 aa38.04■■■■□ 3.68
NME3-206ENST00000564252 CCDC141Q6ZP82 1450 aa38.03■■■■□ 3.68
NME3-206ENST00000564252 LRRC9Q6ZRR7 1453 aa38.01■■■■□ 3.67
NME3-206ENST00000564252 PTPRTO14522 1441 aa37.99■■■■□ 3.67
NME3-206ENST00000564252 DHX29Q7Z478 1369 aaKnown RBP37.99■■■■□ 3.67
NME3-206ENST00000564252 PPP6R1Q9UPN7 881 aa37.98■■■■□ 3.67
NME3-206ENST00000564252 NCOA1Q15788 1441 aa37.97■■■■□ 3.67
NME3-206ENST00000564252 PTPRKQ15262 1439 aa37.95■■■■□ 3.67
NME3-206ENST00000564252 RSPH4AQ5TD94 716 aa37.95■■■■□ 3.67
NME3-206ENST00000564252 ARHGEF5Q12774 1597 aa37.94■■■■□ 3.66
NME3-206ENST00000564252 CAMSAP1Q5T5Y3 1602 aa37.91■■■■□ 3.66
NME3-206ENST00000564252 MYO3AQ8NEV4 1616 aa37.91■■■■□ 3.66
NME3-206ENST00000564252 MAP3K1Q13233 1512 aa37.91■■■■□ 3.66
NME3-206ENST00000564252 ZNF142P52746 1687 aaPredicted RBP37.9■■■■□ 3.66
NME3-206ENST00000564252 KANK4Q5T7N3 995 aaPredicted RBP37.86■■■■□ 3.65
NME3-206ENST00000564252 CEP170BQ9Y4F5 1589 aaPredicted RBP37.85■■■■□ 3.65
NME3-206ENST00000564252 KIF3BO15066 747 aa37.83■■■■□ 3.65
NME3-206ENST00000564252 FAM135AQ9P2D6 1515 aa37.79■■■■□ 3.64
NME3-206ENST00000564252 TSPY4P0CV99 314 aa37.79■■■■□ 3.64
NME3-206ENST00000564252 TSPY10P0CW01 314 aa37.79■■■■□ 3.64
NME3-206ENST00000564252 KDM5DQ9BY66 1539 aa37.78■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms