RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF316A6NFI3 1004 aaPredicted RBP12.26□□□□□ -0.45
VPS35-205ENST00000563984 KHSRPQ92945 711 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS35-205ENST00000563984 MS4A4AQ96JQ5 239 aa12.23□□□□□ -0.45
VPS35-205ENST00000563984 PLA2G2EQ9NZK7 142 aa12.22□□□□□ -0.45
VPS35-205ENST00000563984 SOX12O15370 315 aa12.17□□□□□ -0.46
VPS35-205ENST00000563984 TRIM41Q8WV44 630 aa12.17□□□□□ -0.46
VPS35-205ENST00000563984 POTEEQ6S8J3 1075 aa12.16□□□□□ -0.46
VPS35-205ENST00000563984 PHF8Q9UPP1 1060 aa12.13□□□□□ -0.47
VPS35-205ENST00000563984 HCSTQ9UBK5 93 aa12.12□□□□□ -0.47
VPS35-205ENST00000563984 PBX2P40425 430 aa12.11□□□□□ -0.47
VPS35-205ENST00000563984 AXIN2Q9Y2T1 843 aa12.1□□□□□ -0.47
VPS35-205ENST00000563984 NUDT7P0C024 238 aa12.06□□□□□ -0.48
VPS35-205ENST00000563984 RNF25Q96BH1 459 aaPredicted RBP12.04□□□□□ -0.48
VPS35-205ENST00000563984 LHX6Q9UPM6 363 aa12.04□□□□□ -0.48
VPS35-205ENST00000563984 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.02□□□□□ -0.49
VPS35-205ENST00000563984 PKD2Q13563 968 aa12.02□□□□□ -0.49
VPS35-205ENST00000563984 ZFP91Q96JP5 570 aaPredicted RBP12.02□□□□□ -0.49
VPS35-205ENST00000563984 KIF3CO14782 793 aa12.01□□□□□ -0.49
VPS35-205ENST00000563984 ADGRD1Q6QNK2 874 aa12□□□□□ -0.49
VPS35-205ENST00000563984 ECM2O94769 699 aaPredicted RBP11.99□□□□□ -0.49
VPS35-205ENST00000563984 RIOK3O14730 519 aaKnown RBP11.98□□□□□ -0.49
VPS35-205ENST00000563984 FBXO22Q8NEZ5 403 aa11.97□□□□□ -0.49
VPS35-205ENST00000563984 PCDHGA4Q9Y5G9 962 aa11.97□□□□□ -0.49
VPS35-205ENST00000563984 C2orf72A6NCS6 295 aa11.96□□□□□ -0.49
VPS35-205ENST00000563984 ARHGAP33O14559 1287 aa11.94□□□□□ -0.5
VPS35-205ENST00000563984 VGFO15240 615 aaPredicted RBP11.94□□□□□ -0.5
VPS35-205ENST00000563984 SLC34A2O95436 690 aa11.94□□□□□ -0.5
VPS35-205ENST00000563984 NLRP6P59044 892 aa11.94□□□□□ -0.5
VPS35-205ENST00000563984 HRO43593 1189 aa11.92□□□□□ -0.5
VPS35-205ENST00000563984 TAOK2Q9UL54 1235 aa11.91□□□□□ -0.5
VPS35-205ENST00000563984 TK2O00142 265 aa11.88□□□□□ -0.51
VPS35-205ENST00000563984 DMRTA1Q5VZB9 504 aa11.87□□□□□ -0.51
VPS35-205ENST00000563984 RGL2O15211 777 aa11.86□□□□□ -0.51
VPS35-205ENST00000563984 KDM4FA0A1W2PPD8 638 aa11.84□□□□□ -0.51
VPS35-205ENST00000563984 AMER1Q5JTC6 1135 aaPredicted RBP11.84□□□□□ -0.51
VPS35-205ENST00000563984 KCTD12Q96CX2 325 aaKnown RBP11.84□□□□□ -0.51
VPS35-205ENST00000563984 MFRPQ9BY79 579 aa11.84□□□□□ -0.51
VPS35-205ENST00000563984 PSEN2P49810 448 aa11.83□□□□□ -0.52
VPS35-205ENST00000563984 BCL11BQ9C0K0 894 aaPredicted RBP11.83□□□□□ -0.52
VPS35-205ENST00000563984 PSDA5PKW4 1024 aaPredicted RBP11.82□□□□□ -0.52
VPS35-205ENST00000563984 STK24Q9Y6E0 443 aa11.81□□□□□ -0.52
VPS35-205ENST00000563984 RGS20O76081 388 aa11.79□□□□□ -0.52
VPS35-205ENST00000563984 STK25O00506 426 aa11.78□□□□□ -0.52
VPS35-205ENST00000563984 IRX2Q9BZI1 471 aaPredicted RBP11.78□□□□□ -0.52
VPS35-205ENST00000563984 IFFO2Q5TF58 517 aa11.75□□□□□ -0.53
VPS35-205ENST00000563984 TMC2Q8TDI7 906 aa11.75□□□□□ -0.53
VPS35-205ENST00000563984 RTN4Q9NQC3 1192 aaKnown RBP11.72□□□□□ -0.53
VPS35-205ENST00000563984 PTPN5P54829 565 aa11.71□□□□□ -0.53
VPS35-205ENST00000563984 PTCD2Q8WV60 388 aaKnown RBP11.71□□□□□ -0.53
VPS35-205ENST00000563984 STAC3Q96MF2 364 aa11.7□□□□□ -0.54
VPS35-205ENST00000563984 A0A0G2JS52 829 aa11.67□□□□□ -0.54
VPS35-205ENST00000563984 PPP4R3BQ5MIZ7 849 aa11.67□□□□□ -0.54
VPS35-205ENST00000563984 HS6ST3Q8IZP7 471 aa11.65□□□□□ -0.54
VPS35-205ENST00000563984 VPS9D1Q9Y2B5 631 aa11.65□□□□□ -0.54
VPS35-205ENST00000563984 KCNK17Q96T54 332 aa11.63□□□□□ -0.55
VPS35-205ENST00000563984 CHGAP10645 457 aaKnown RBP11.62□□□□□ -0.55
VPS35-205ENST00000563984 PPP1R37O75864 691 aa11.61□□□□□ -0.55
VPS35-205ENST00000563984 DCAF8L2P0C7V8 631 aa11.6□□□□□ -0.55
VPS35-205ENST00000563984 THSD4Q6ZMP0 1018 aa11.6□□□□□ -0.55
VPS35-205ENST00000563984 BHMG1C9JSJ3 638 aaPredicted RBP11.57□□□□□ -0.56
VPS35-205ENST00000563984 DNAJC5Q9H3Z4 198 aa11.57□□□□□ -0.56
VPS35-205ENST00000563984 FOXK1P85037 733 aa11.56□□□□□ -0.56
VPS35-205ENST00000563984 PLPP6Q8IY26 295 aa11.56□□□□□ -0.56
VPS35-205ENST00000563984 KCNH8Q96L42 1107 aa11.55□□□□□ -0.56
VPS35-205ENST00000563984 SLC4A5Q9BY07 1137 aa11.55□□□□□ -0.56
VPS35-205ENST00000563984 TBC1D12O60347 775 aa11.52□□□□□ -0.57
VPS35-205ENST00000563984 WNT2BQ93097 391 aa11.49□□□□□ -0.57
VPS35-205ENST00000563984 GPHNQ9NQX3 736 aaPredicted RBP11.49□□□□□ -0.57
VPS35-205ENST00000563984 DSG2Q14126 1118 aa11.48□□□□□ -0.57
VPS35-205ENST00000563984 Q6ZNB5 142 aa11.48□□□□□ -0.57
VPS35-205ENST00000563984 BCL2L12Q9HB09 334 aa11.48□□□□□ -0.57
VPS35-205ENST00000563984 ZBED2Q9BTP6 218 aa11.46□□□□□ -0.57
VPS35-205ENST00000563984 RYDENQ9NUL5 291 aaKnown RBP11.46□□□□□ -0.57
VPS35-205ENST00000563984 GOLGA8CPA6NN73 597 aa11.45□□□□□ -0.58
VPS35-205ENST00000563984 ZNF454Q8N9F8 522 aa11.45□□□□□ -0.58
VPS35-205ENST00000563984 NKX1-1Q15270 411 aaPredicted RBP11.44□□□□□ -0.58
VPS35-205ENST00000563984 MRPL50Q8N5N7 158 aaKnown RBP11.44□□□□□ -0.58
VPS35-205ENST00000563984 OXER1Q8TDS5 423 aa11.42□□□□□ -0.58
VPS35-205ENST00000563984 ITGBL1O95965 494 aaPredicted RBP11.41□□□□□ -0.58
VPS35-205ENST00000563984 PTPREP23469 700 aa11.4□□□□□ -0.58
VPS35-205ENST00000563984 FOSBP53539 338 aa11.39□□□□□ -0.59
VPS35-205ENST00000563984 BBXQ8WY36 941 aaPredicted RBP11.39□□□□□ -0.59
VPS35-205ENST00000563984 LCE2BO14633 110 aa11.38□□□□□ -0.59
VPS35-205ENST00000563984 UPF1Q92900 1129 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS35-205ENST00000563984 GTPBP6O43824 516 aaPredicted RBP11.34□□□□□ -0.59
VPS35-205ENST00000563984 NBPF3Q9H094 633 aa11.34□□□□□ -0.59
VPS35-205ENST00000563984 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.32□□□□□ -0.6
VPS35-205ENST00000563984 ADAM33Q9BZ11 813 aa11.3□□□□□ -0.6
VPS35-205ENST00000563984 ANO8Q9HCE9 1232 aaPredicted RBP11.29□□□□□ -0.6
VPS35-205ENST00000563984 JPH4Q96JJ6 628 aa11.28□□□□□ -0.6
VPS35-205ENST00000563984 TRAF7Q6Q0C0 670 aa11.27□□□□□ -0.61
VPS35-205ENST00000563984 ZDHHC16Q969W1 377 aa11.27□□□□□ -0.61
VPS35-205ENST00000563984 BCAMP50895 628 aa11.26□□□□□ -0.61
VPS35-205ENST00000563984 LAPTM4AQ15012 233 aa11.26□□□□□ -0.61
VPS35-205ENST00000563984 ANKK1Q8NFD2 765 aa11.26□□□□□ -0.61
VPS35-205ENST00000563984 SPRYD3Q8NCJ5 442 aa11.25□□□□□ -0.61
VPS35-205ENST00000563984 RABGEF1Q9UJ41 708 aa11.24□□□□□ -0.61
VPS35-205ENST00000563984 KCNC4Q03721 635 aa11.23□□□□□ -0.61
VPS35-205ENST00000563984 SOWAHBA6NEL2 793 aa11.22□□□□□ -0.61
VPS35-205ENST00000563984 GFRA3O60609 400 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms