RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 VPS8Q8N3P4 1428 aa21.27■■□□□ 1
CLK3-213ENST00000563842 ADGRL1O94910 1474 aa21.26■□□□□ 0.99
CLK3-213ENST00000563842 PREX2Q70Z35 1606 aa21.26■□□□□ 0.99
CLK3-213ENST00000563842 FRMPD1Q5SYB0 1578 aa21.25■□□□□ 0.99
CLK3-213ENST00000563842 CDC42BPAQ5VT25 1732 aa21.25■□□□□ 0.99
CLK3-213ENST00000563842 SCAPERQ9BY12 1400 aa21.23■□□□□ 0.99
CLK3-213ENST00000563842 EHBP1L1Q8N3D4 1523 aa21.22■□□□□ 0.99
CLK3-213ENST00000563842 ZMYM4Q5VZL5 1548 aa21.19■□□□□ 0.98
CLK3-213ENST00000563842 POGZQ7Z3K3 1410 aa21.18■□□□□ 0.98
CLK3-213ENST00000563842 MAGI2Q86UL8 1455 aa21.18■□□□□ 0.98
CLK3-213ENST00000563842 TIAM1Q13009 1591 aa21.18■□□□□ 0.98
CLK3-213ENST00000563842 CCNB3Q8WWL7 1395 aa21.16■□□□□ 0.98
CLK3-213ENST00000563842 GPATCH8Q9UKJ3 1502 aaKnown RBP21.15■□□□□ 0.98
CLK3-213ENST00000563842 ZNF518AQ6AHZ1 1483 aa21.15■□□□□ 0.98
CLK3-213ENST00000563842 SUPT6HQ7KZ85 1726 aaKnown RBP21.15■□□□□ 0.98
CLK3-213ENST00000563842 ARHGEF40Q8TER5 1519 aa21.14■□□□□ 0.98
CLK3-213ENST00000563842 FBXO41Q8TF61 875 aa21.14■□□□□ 0.97
CLK3-213ENST00000563842 ITSN2Q9NZM3 1697 aa21.14■□□□□ 0.97
CLK3-213ENST00000563842 MAP3K1Q13233 1512 aa21.14■□□□□ 0.97
CLK3-213ENST00000563842 ZFYVE16Q7Z3T8 1539 aa21.13■□□□□ 0.97
CLK3-213ENST00000563842 CFDP1Q9UEE9 299 aaPredicted RBP21.12■□□□□ 0.97
CLK3-213ENST00000563842 ABCC1P33527 1531 aa21.12■□□□□ 0.97
CLK3-213ENST00000563842 APLP2Q06481 763 aa21.1■□□□□ 0.97
CLK3-213ENST00000563842 ZNF777Q9ULD5 760 aaPredicted RBP21.1■□□□□ 0.97
CLK3-213ENST00000563842 PLEKHH2Q8IVE3 1493 aa21.09■□□□□ 0.97
CLK3-213ENST00000563842 KDM5CP41229 1560 aa21.09■□□□□ 0.97
CLK3-213ENST00000563842 LRRC9Q6ZRR7 1453 aa21.07■□□□□ 0.96
CLK3-213ENST00000563842 ARID4BQ4LE39 1312 aaPredicted RBP21.07■□□□□ 0.96
CLK3-213ENST00000563842 SAMD9LQ8IVG5 1584 aa21.07■□□□□ 0.96
CLK3-213ENST00000563842 AFAP1Q8N556 730 aa21.07■□□□□ 0.96
CLK3-213ENST00000563842 MYT1LQ9UL68 1186 aa21.07■□□□□ 0.96
CLK3-213ENST00000563842 NCOA2Q15596 1464 aa21.06■□□□□ 0.96
CLK3-213ENST00000563842 HECW2Q9P2P5 1572 aa21.06■□□□□ 0.96
CLK3-213ENST00000563842 YEATS2Q9ULM3 1422 aa21.05■□□□□ 0.96
CLK3-213ENST00000563842 KIAA1107Q9UPP5 1409 aa21.04■□□□□ 0.96
CLK3-213ENST00000563842 BCORL1Q5H9F3 1711 aa21.04■□□□□ 0.96
CLK3-213ENST00000563842 ARHGEF12Q9NZN5 1544 aa21.04■□□□□ 0.96
CLK3-213ENST00000563842 ATP10AO60312 1499 aa21.03■□□□□ 0.96
CLK3-213ENST00000563842 MLH3Q9UHC1 1453 aa21.03■□□□□ 0.96
CLK3-213ENST00000563842 TRAPPC8Q9Y2L5 1435 aa21.03■□□□□ 0.96
CLK3-213ENST00000563842 SYCP2Q9BX26 1530 aa21.02■□□□□ 0.96
CLK3-213ENST00000563842 ADAMTSL3P82987 1691 aa21.01■□□□□ 0.95
CLK3-213ENST00000563842 C9orf84Q5VXU9 1444 aa21.01■□□□□ 0.95
CLK3-213ENST00000563842 HNRNPMP52272 730 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLK3-213ENST00000563842 KIDINS220Q9ULH0 1771 aa20.97■□□□□ 0.95
CLK3-213ENST00000563842 KANK4Q5T7N3 995 aaPredicted RBP20.97■□□□□ 0.95
CLK3-213ENST00000563842 DIP2CQ9Y2E4 1556 aa20.97■□□□□ 0.95
CLK3-213ENST00000563842 SPAG9O60271 1321 aaKnown RBP20.96■□□□□ 0.95
CLK3-213ENST00000563842 REREQ9P2R6 1566 aa20.95■□□□□ 0.94
CLK3-213ENST00000563842 ABCA6Q8N139 1617 aa20.95■□□□□ 0.94
CLK3-213ENST00000563842 RSPH4AQ5TD94 716 aa20.94■□□□□ 0.94
CLK3-213ENST00000563842 SIGLEC1Q9BZZ2 1709 aa20.94■□□□□ 0.94
CLK3-213ENST00000563842 ZNF644Q9H582 1327 aaPredicted RBP20.93■□□□□ 0.94
CLK3-213ENST00000563842 MADDQ8WXG6 1647 aa20.93■□□□□ 0.94
CLK3-213ENST00000563842 CAMSAP2Q08AD1 1489 aa20.92■□□□□ 0.94
CLK3-213ENST00000563842 ATP7AQ04656 1500 aa20.91■□□□□ 0.94
CLK3-213ENST00000563842 MBD5Q9P267 1494 aa20.9■□□□□ 0.94
CLK3-213ENST00000563842 FER1L4A9Z1Z3 1794 aa20.9■□□□□ 0.94
CLK3-213ENST00000563842 RIMS1Q86UR5 1692 aaKnown RBP20.89■□□□□ 0.94
CLK3-213ENST00000563842 INO80Q9ULG1 1556 aaPredicted RBP20.89■□□□□ 0.94
CLK3-213ENST00000563842 LMTK3Q96Q04 1460 aa20.89■□□□□ 0.94
CLK3-213ENST00000563842 MYOM3Q5VTT5 1437 aa20.89■□□□□ 0.94
CLK3-213ENST00000563842 MIA2Q96PC5 1412 aa20.89■□□□□ 0.94
CLK3-213ENST00000563842 PTPRMP28827 1452 aa20.88■□□□□ 0.93
CLK3-213ENST00000563842 MLECQ14165 292 aa20.88■□□□□ 0.93
CLK3-213ENST00000563842 AGLP35573 1532 aa20.88■□□□□ 0.93
CLK3-213ENST00000563842 CCDC141Q6ZP82 1450 aa20.87■□□□□ 0.93
CLK3-213ENST00000563842 ARHGEF5Q12774 1597 aa20.86■□□□□ 0.93
CLK3-213ENST00000563842 ADGBQ8N7X0 1667 aa20.86■□□□□ 0.93
CLK3-213ENST00000563842 RTEL1-TNFRSF6BF6WH68 1400 aa20.86■□□□□ 0.93
CLK3-213ENST00000563842 TSPY4P0CV99 314 aa20.83■□□□□ 0.93
CLK3-213ENST00000563842 TSPY10P0CW01 314 aa20.83■□□□□ 0.93
CLK3-213ENST00000563842 A2MP01023 1474 aa20.81■□□□□ 0.92
CLK3-213ENST00000563842 ESF1Q9H501 851 aaKnown RBP20.79■□□□□ 0.92
CLK3-213ENST00000563842 PLXNC1O60486 1568 aa20.78■□□□□ 0.92
CLK3-213ENST00000563842 SOCS7O14512 581 aa20.78■□□□□ 0.92
CLK3-213ENST00000563842 PTPN23Q9H3S7 1636 aa20.78■□□□□ 0.92
CLK3-213ENST00000563842 SETD1BQ9UPS6 1966 aaKnown RBP20.76■□□□□ 0.91
CLK3-213ENST00000563842 FGD6Q6ZV73 1430 aa20.75■□□□□ 0.91
CLK3-213ENST00000563842 MAST1Q9Y2H9 1570 aa20.75■□□□□ 0.91
CLK3-213ENST00000563842 DHX29Q7Z478 1369 aaKnown RBP20.73■□□□□ 0.91
CLK3-213ENST00000563842 CNTLNQ9NXG0 1405 aa20.73■□□□□ 0.91
CLK3-213ENST00000563842 TCOF1Q13428 1488 aaKnown RBP20.71■□□□□ 0.91
CLK3-213ENST00000563842 PLPPR3Q6T4P5 718 aa20.71■□□□□ 0.91
CLK3-213ENST00000563842 PPP6R1Q9UPN7 881 aa20.7■□□□□ 0.9
CLK3-213ENST00000563842 CROCC2H7BZ55 1655 aa20.7■□□□□ 0.9
CLK3-213ENST00000563842 MROH2AA6NES4 1674 aa20.69■□□□□ 0.9
CLK3-213ENST00000563842 C3P01024 1663 aa20.68■□□□□ 0.9
CLK3-213ENST00000563842 GGT6Q6P531 493 aa20.68■□□□□ 0.9
CLK3-213ENST00000563842 DNMT1P26358 1616 aaKnown RBP20.67■□□□□ 0.9
CLK3-213ENST00000563842 SHANK2Q9UPX8 1470 aa20.67■□□□□ 0.9
CLK3-213ENST00000563842 CLTCQ00610 1675 aaKnown RBP20.64■□□□□ 0.9
CLK3-213ENST00000563842 ABCC5O15440 1437 aa20.64■□□□□ 0.89
CLK3-213ENST00000563842 DAPK1P53355 1430 aa20.64■□□□□ 0.89
CLK3-213ENST00000563842 KIF3BO15066 747 aa20.64■□□□□ 0.89
CLK3-213ENST00000563842 PREX1Q8TCU6 1659 aa20.64■□□□□ 0.89
CLK3-213ENST00000563842 CEBPAP49715 358 aaPredicted RBP20.63■□□□□ 0.89
CLK3-213ENST00000563842 FAM135AQ9P2D6 1515 aa20.62■□□□□ 0.89
CLK3-213ENST00000563842 EIF2AK4Q9P2K8 1649 aaKnown RBP20.61■□□□□ 0.89
CLK3-213ENST00000563842 FAM50AQ14320 339 aaKnown RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms