RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 MAPK8IP3Q9UPT6 1336 aa7.86□□□□□ -1.15
CLK3-212ENST00000563418 DIAPH3Q9NSV4 1193 aa7.86□□□□□ -1.15
CLK3-212ENST00000563418 CENPQQ7L2Z9 268 aaPredicted RBP7.86□□□□□ -1.15
CLK3-212ENST00000563418 PHLDB1Q86UU1 1377 aa7.86□□□□□ -1.15
CLK3-212ENST00000563418 RBM10P98175 930 aaKnown RBP7.86□□□□□ -1.15
CLK3-212ENST00000563418 RCAN3Q9UKA8 241 aa7.86□□□□□ -1.15
CLK3-212ENST00000563418 CCDC39Q9UFE4 941 aa7.86□□□□□ -1.15
CLK3-212ENST00000563418 AXDND1Q5T1B0 1012 aaPredicted RBP7.84□□□□□ -1.15
CLK3-212ENST00000563418 DNAJC2Q99543 621 aaKnown RBP7.84□□□□□ -1.15
CLK3-212ENST00000563418 LETM1O95202 739 aaPredicted RBP7.84□□□□□ -1.15
CLK3-212ENST00000563418 KTN1Q86UP2 1357 aaKnown RBP7.84□□□□□ -1.15
CLK3-212ENST00000563418 IRX3P78415 501 aaPredicted RBP7.84□□□□□ -1.15
CLK3-212ENST00000563418 TPM3P06753 285 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 ESPNB1AK53 854 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 KIAA1211Q6ZU35 1233 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 DRC7Q8IY82 874 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 KIF3AQ9Y496 699 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 PDCL2Q8N4E4 241 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 KIF16BQ96L93 1317 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 CCNB3Q8WWL7 1395 aa7.83□□□□□ -1.16
CLK3-212ENST00000563418 VPS8Q8N3P4 1428 aa7.82□□□□□ -1.16
CLK3-212ENST00000563418 SLC4A1APQ9BWU0 796 aaKnown RBP7.82□□□□□ -1.16
CLK3-212ENST00000563418 HOMEZQ8IX15 550 aa7.82□□□□□ -1.16
CLK3-212ENST00000563418 CLCN1P35523 988 aa7.82□□□□□ -1.16
CLK3-212ENST00000563418 GTPBP4Q9BZE4 634 aaKnown RBP7.81□□□□□ -1.16
CLK3-212ENST00000563418 CHMP5Q9NZZ3 219 aa7.81□□□□□ -1.16
CLK3-212ENST00000563418 SMAP1Q8IYB5 467 aaPredicted RBP7.81□□□□□ -1.16
CLK3-212ENST00000563418 PLEKHG5O94827 1062 aa7.81□□□□□ -1.16
CLK3-212ENST00000563418 PLCB2Q00722 1185 aa7.81□□□□□ -1.16
CLK3-212ENST00000563418 CALCOCO1Q9P1Z2 691 aa7.81□□□□□ -1.16
CLK3-212ENST00000563418 NASPP49321 788 aaPredicted RBP7.81□□□□□ -1.16
CLK3-212ENST00000563418 RSF1Q96T23 1441 aaPredicted RBP7.81□□□□□ -1.16
CLK3-212ENST00000563418 ARGLU1Q9NWB6 273 aaPredicted RBP7.81□□□□□ -1.16
CLK3-212ENST00000563418 SETD5Q9C0A6 1442 aa7.81□□□□□ -1.16
CLK3-212ENST00000563418 FTSJ3Q8IY81 847 aaKnown RBP7.8□□□□□ -1.16
CLK3-212ENST00000563418 PAK3O75914 559 aaPredicted RBP7.8□□□□□ -1.16
CLK3-212ENST00000563418 ROCK2O75116 1388 aaKnown RBP7.8□□□□□ -1.16
CLK3-212ENST00000563418 PMFBP1Q8TBY8 1022 aa7.8□□□□□ -1.16
CLK3-212ENST00000563418 R3HCC1Q9Y3T6 440 aaKnown RBP7.8□□□□□ -1.16
CLK3-212ENST00000563418 USP8P40818 1118 aa7.8□□□□□ -1.16
CLK3-212ENST00000563418 FGD1P98174 961 aa7.8□□□□□ -1.16
CLK3-212ENST00000563418 DYNC1I1O14576 645 aa7.8□□□□□ -1.16
CLK3-212ENST00000563418 CC2D1BQ5T0F9 858 aaKnown RBP7.8□□□□□ -1.16
CLK3-212ENST00000563418 KIF20AO95235 890 aa7.79□□□□□ -1.16
CLK3-212ENST00000563418 EIF3AQ14152 1382 aaKnown RBP7.79□□□□□ -1.16
CLK3-212ENST00000563418 BRD2P25440 801 aaKnown RBP7.79□□□□□ -1.16
CLK3-212ENST00000563418 DEF6Q9H4E7 631 aa7.79□□□□□ -1.16
CLK3-212ENST00000563418 RALBP1Q15311 655 aa7.79□□□□□ -1.16
CLK3-212ENST00000563418 ZSCAN30Q86W11 494 aa7.78□□□□□ -1.16
CLK3-212ENST00000563418 UQCRHLA0A096LP55 91 aa7.78□□□□□ -1.16
CLK3-212ENST00000563418 UQCRHP07919 91 aa7.78□□□□□ -1.16
CLK3-212ENST00000563418 MCCP23508 829 aa7.78□□□□□ -1.16
CLK3-212ENST00000563418 WASHC2AQ641Q2 1341 aa7.78□□□□□ -1.16
CLK3-212ENST00000563418 RWDD1Q9H446 243 aaPredicted RBP7.78□□□□□ -1.16
CLK3-212ENST00000563418 NAP1L2Q9ULW6 460 aaPredicted RBP7.78□□□□□ -1.16
CLK3-212ENST00000563418 RRP1P56182 461 aaKnown RBP7.77□□□□□ -1.16
CLK3-212ENST00000563418 CAVIN1Q6NZI2 390 aaKnown RBP7.77□□□□□ -1.16
CLK3-212ENST00000563418 AAMPQ13685 434 aa7.77□□□□□ -1.17
CLK3-212ENST00000563418 MCM5P33992 734 aa7.77□□□□□ -1.17
CLK3-212ENST00000563418 HIRIP3Q9BW71 556 aaPredicted RBP7.77□□□□□ -1.17
CLK3-212ENST00000563418 WASHC2CQ9Y4E1 1318 aa7.77□□□□□ -1.17
CLK3-212ENST00000563418 CTR9Q6PD62 1173 aa7.77□□□□□ -1.17
CLK3-212ENST00000563418 DDX49Q9Y6V7 483 aaKnown RBP7.77□□□□□ -1.17
CLK3-212ENST00000563418 CLGNO14967 610 aa7.77□□□□□ -1.17
CLK3-212ENST00000563418 HSP90B1P14625 803 aaKnown RBP7.77□□□□□ -1.17
CLK3-212ENST00000563418 GOLGA6L4A6NEF3 574 aa7.76□□□□□ -1.17
CLK3-212ENST00000563418 DHX57Q6P158 1386 aaKnown RBP7.76□□□□□ -1.17
CLK3-212ENST00000563418 PATL2C9JE40 543 aaKnown RBP7.76□□□□□ -1.17
CLK3-212ENST00000563418 GRPEL1Q9HAV7 217 aa7.76□□□□□ -1.17
CLK3-212ENST00000563418 CDCA8Q53HL2 280 aa7.75□□□□□ -1.17
CLK3-212ENST00000563418 AK7Q96M32 723 aa7.75□□□□□ -1.17
CLK3-212ENST00000563418 ABCC9O60706 1549 aa7.75□□□□□ -1.17
CLK3-212ENST00000563418 RDXP35241 583 aaKnown RBP7.75□□□□□ -1.17
CLK3-212ENST00000563418 ACBD3Q9H3P7 528 aa7.75□□□□□ -1.17
CLK3-212ENST00000563418 SASS6Q6UVJ0 657 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 BACH2Q9BYV9 841 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 TPM4P67936 248 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 TERF1P54274 439 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 FRAT2O75474 233 aaPredicted RBP7.74□□□□□ -1.17
CLK3-212ENST00000563418 SPRYD3Q8NCJ5 442 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 TRAK2O60296 914 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 TIGD1Q96MW7 591 aa7.74□□□□□ -1.17
CLK3-212ENST00000563418 NCBP3Q53F19 620 aaKnown RBP7.74□□□□□ -1.17
CLK3-212ENST00000563418 CENPJQ9HC77 1338 aaPredicted RBP7.73□□□□□ -1.17
CLK3-212ENST00000563418 IPO4Q8TEX9 1081 aaKnown RBP7.73□□□□□ -1.17
CLK3-212ENST00000563418 ATP6V1DQ9Y5K8 247 aa7.73□□□□□ -1.17
CLK3-212ENST00000563418 LEKR1Q6ZMV7 388 aa7.73□□□□□ -1.17
CLK3-212ENST00000563418 SSR1P43307 286 aaKnown RBP7.72□□□□□ -1.17
CLK3-212ENST00000563418 RNF20Q5VTR2 975 aa7.72□□□□□ -1.17
CLK3-212ENST00000563418 DHX8Q14562 1220 aaKnown RBP7.72□□□□□ -1.17
CLK3-212ENST00000563418 CCDC94Q9BW85 323 aaPredicted RBP7.72□□□□□ -1.17
CLK3-212ENST00000563418 ST18O60284 1047 aa7.72□□□□□ -1.17
CLK3-212ENST00000563418 SMG6Q86US8 1419 aaKnown RBP7.72□□□□□ -1.17
CLK3-212ENST00000563418 NBPF1Q3BBV0 1214 aa7.72□□□□□ -1.17
CLK3-212ENST00000563418 NUCB2P80303 420 aa7.71□□□□□ -1.17
CLK3-212ENST00000563418 CGNL1Q0VF96 1302 aa7.71□□□□□ -1.18
CLK3-212ENST00000563418 CGNQ9P2M7 1197 aaKnown RBP7.71□□□□□ -1.18
CLK3-212ENST00000563418 MNS1Q8NEH6 495 aa7.71□□□□□ -1.18
CLK3-212ENST00000563418 PRIMPOLQ96LW4 560 aa7.7□□□□□ -1.18
CLK3-212ENST00000563418 KNSTRNQ9Y448 316 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms