RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ARHGEF40Q8TER5 1519 aa27.03■■□□□ 1.92
CLK3-210ENST00000563112 MAGI2Q86UL8 1455 aa27.02■■□□□ 1.92
CLK3-210ENST00000563112 CEP162Q5TB80 1403 aa27.02■■□□□ 1.92
CLK3-210ENST00000563112 POGZQ7Z3K3 1410 aa27.02■■□□□ 1.92
CLK3-210ENST00000563112 ZFYVE16Q7Z3T8 1539 aa27■■□□□ 1.91
CLK3-210ENST00000563112 CDC42BPBQ9Y5S2 1711 aa26.96■■□□□ 1.91
CLK3-210ENST00000563112 YEATS2Q9ULM3 1422 aa26.95■■□□□ 1.9
CLK3-210ENST00000563112 ADAMTSL3P82987 1691 aa26.95■■□□□ 1.9
CLK3-210ENST00000563112 PREX2Q70Z35 1606 aa26.94■■□□□ 1.9
CLK3-210ENST00000563112 ZNF518AQ6AHZ1 1483 aa26.93■■□□□ 1.9
CLK3-210ENST00000563112 BCORL1Q5H9F3 1711 aa26.93■■□□□ 1.9
CLK3-210ENST00000563112 LOC105371045A0A1W2PR82 267 aa26.93■■□□□ 1.9
CLK3-210ENST00000563112 AFAP1Q8N556 730 aa26.91■■□□□ 1.9
CLK3-210ENST00000563112 MYT1LQ9UL68 1186 aa26.91■■□□□ 1.9
CLK3-210ENST00000563112 MTUS2Q5JR59 1369 aa26.91■■□□□ 1.9
CLK3-210ENST00000563112 CDC42BPAQ5VT25 1732 aa26.88■■□□□ 1.89
CLK3-210ENST00000563112 ATP10AO60312 1499 aa26.87■■□□□ 1.89
CLK3-210ENST00000563112 PTPRMP28827 1452 aa26.87■■□□□ 1.89
CLK3-210ENST00000563112 ZNF777Q9ULD5 760 aaPredicted RBP26.86■■□□□ 1.89
CLK3-210ENST00000563112 MADDQ8WXG6 1647 aa26.85■■□□□ 1.89
CLK3-210ENST00000563112 KDM5CP41229 1560 aa26.84■■□□□ 1.89
CLK3-210ENST00000563112 ABCC1P33527 1531 aa26.84■■□□□ 1.89
CLK3-210ENST00000563112 GPATCH8Q9UKJ3 1502 aaKnown RBP26.84■■□□□ 1.89
CLK3-210ENST00000563112 CCNB3Q8WWL7 1395 aa26.84■■□□□ 1.89
CLK3-210ENST00000563112 C9orf84Q5VXU9 1444 aa26.83■■□□□ 1.89
CLK3-210ENST00000563112 MLECQ14165 292 aa26.82■■□□□ 1.88
CLK3-210ENST00000563112 HECW2Q9P2P5 1572 aa26.81■■□□□ 1.88
CLK3-210ENST00000563112 CFDP1Q9UEE9 299 aaPredicted RBP26.81■■□□□ 1.88
CLK3-210ENST00000563112 ITSN2Q9NZM3 1697 aa26.8■■□□□ 1.88
CLK3-210ENST00000563112 TRAPPC8Q9Y2L5 1435 aa26.8■■□□□ 1.88
CLK3-210ENST00000563112 ARHGEF12Q9NZN5 1544 aa26.8■■□□□ 1.88
CLK3-210ENST00000563112 MLH3Q9UHC1 1453 aa26.79■■□□□ 1.88
CLK3-210ENST00000563112 EHBP1L1Q8N3D4 1523 aa26.79■■□□□ 1.88
CLK3-210ENST00000563112 SIGLEC1Q9BZZ2 1709 aa26.78■■□□□ 1.88
CLK3-210ENST00000563112 RIMS1Q86UR5 1692 aaKnown RBP26.77■■□□□ 1.88
CLK3-210ENST00000563112 SAMD9LQ8IVG5 1584 aa26.75■■□□□ 1.87
CLK3-210ENST00000563112 PLEKHH2Q8IVE3 1493 aa26.74■■□□□ 1.87
CLK3-210ENST00000563112 VPS8Q8N3P4 1428 aa26.73■■□□□ 1.87
CLK3-210ENST00000563112 DIP2CQ9Y2E4 1556 aa26.72■■□□□ 1.87
CLK3-210ENST00000563112 HNRNPMP52272 730 aaKnown RBP eCLIP26.72■■□□□ 1.876e-20■■■■■ 33.1
CLK3-210ENST00000563112 KIAA1107Q9UPP5 1409 aa26.71■■□□□ 1.87
CLK3-210ENST00000563112 SYCP2Q9BX26 1530 aa26.7■■□□□ 1.87
CLK3-210ENST00000563112 PLPPR3Q6T4P5 718 aa26.7■■□□□ 1.86
CLK3-210ENST00000563112 FER1L4A9Z1Z3 1794 aa26.69■■□□□ 1.86
CLK3-210ENST00000563112 ABCA6Q8N139 1617 aa26.68■■□□□ 1.86
CLK3-210ENST00000563112 SPAG9O60271 1321 aaKnown RBP26.68■■□□□ 1.86
CLK3-210ENST00000563112 REREQ9P2R6 1566 aa26.68■■□□□ 1.86
CLK3-210ENST00000563112 TIAM1Q13009 1591 aa26.67■■□□□ 1.86
CLK3-210ENST00000563112 KIDINS220Q9ULH0 1771 aa26.66■■□□□ 1.86
CLK3-210ENST00000563112 SUPT6HQ7KZ85 1726 aaKnown RBP26.65■■□□□ 1.86
CLK3-210ENST00000563112 NCOA2Q15596 1464 aa26.62■■□□□ 1.85
CLK3-210ENST00000563112 AGLP35573 1532 aa26.61■■□□□ 1.85
CLK3-210ENST00000563112 ZNF644Q9H582 1327 aaPredicted RBP26.61■■□□□ 1.85
CLK3-210ENST00000563112 ESF1Q9H501 851 aaKnown RBP26.6■■□□□ 1.85
CLK3-210ENST00000563112 ATP7AQ04656 1500 aa26.58■■□□□ 1.85
CLK3-210ENST00000563112 LRRC9Q6ZRR7 1453 aa26.57■■□□□ 1.84
CLK3-210ENST00000563112 MAP3K1Q13233 1512 aa26.56■■□□□ 1.84
CLK3-210ENST00000563112 LMTK3Q96Q04 1460 aa26.55■■□□□ 1.84
CLK3-210ENST00000563112 APLP2Q06481 763 aa26.54■■□□□ 1.84
CLK3-210ENST00000563112 MBD5Q9P267 1494 aa26.53■■□□□ 1.84
CLK3-210ENST00000563112 INO80Q9ULG1 1556 aaPredicted RBP26.53■■□□□ 1.84
CLK3-210ENST00000563112 CEBPAP49715 358 aaPredicted RBP26.52■■□□□ 1.84
CLK3-210ENST00000563112 RSPH4AQ5TD94 716 aa26.52■■□□□ 1.84
CLK3-210ENST00000563112 A2MP01023 1474 aa26.49■■□□□ 1.83
CLK3-210ENST00000563112 CAMSAP2Q08AD1 1489 aa26.49■■□□□ 1.83
CLK3-210ENST00000563112 KANK4Q5T7N3 995 aaPredicted RBP26.49■■□□□ 1.83
CLK3-210ENST00000563112 RTEL1-TNFRSF6BF6WH68 1400 aa26.48■■□□□ 1.83
CLK3-210ENST00000563112 CNTLNQ9NXG0 1405 aa26.47■■□□□ 1.83
CLK3-210ENST00000563112 CCDC141Q6ZP82 1450 aa26.46■■□□□ 1.83
CLK3-210ENST00000563112 HSPA2P54652 639 aa26.45■■□□□ 1.82
CLK3-210ENST00000563112 ADGBQ8N7X0 1667 aa26.44■■□□□ 1.82
CLK3-210ENST00000563112 SETD1BQ9UPS6 1966 aaKnown RBP26.42■■□□□ 1.82
CLK3-210ENST00000563112 PLXNC1O60486 1568 aa26.42■■□□□ 1.82
CLK3-210ENST00000563112 TSPY4P0CV99 314 aa26.42■■□□□ 1.82
CLK3-210ENST00000563112 TSPY10P0CW01 314 aa26.42■■□□□ 1.82
CLK3-210ENST00000563112 PREX1Q8TCU6 1659 aa26.41■■□□□ 1.82
CLK3-210ENST00000563112 GGT6Q6P531 493 aa26.4■■□□□ 1.82
CLK3-210ENST00000563112 C3P01024 1663 aa26.4■■□□□ 1.82
CLK3-210ENST00000563112 ARHGEF5Q12774 1597 aa26.38■■□□□ 1.81
CLK3-210ENST00000563112 MYOM3Q5VTT5 1437 aa26.38■■□□□ 1.81
CLK3-210ENST00000563112 UHRF1BP1Q6BDS2 1440 aa26.38■■□□□ 1.81
CLK3-210ENST00000563112 MIA2Q96PC5 1412 aa26.38■■□□□ 1.81
CLK3-210ENST00000563112 DHX29Q7Z478 1369 aaKnown RBP26.37■■□□□ 1.81
CLK3-210ENST00000563112 PPP6R1Q9UPN7 881 aa26.37■■□□□ 1.81
CLK3-210ENST00000563112 MROH2AA6NES4 1674 aa26.34■■□□□ 1.81
CLK3-210ENST00000563112 ZMYM3Q14202 1370 aa26.33■■□□□ 1.81
CLK3-210ENST00000563112 KIF3BO15066 747 aa26.3■■□□□ 1.8
CLK3-210ENST00000563112 CLTCQ00610 1675 aaKnown RBP26.3■■□□□ 1.8
CLK3-210ENST00000563112 ILDR1Q86SU0 546 aaPredicted RBP26.28■■□□□ 1.8
CLK3-210ENST00000563112 NPATQ14207 1427 aa26.28■■□□□ 1.8
CLK3-210ENST00000563112 MAST1Q9Y2H9 1570 aa26.24■■□□□ 1.79
CLK3-210ENST00000563112 DMRT2Q9Y5R5 561 aa26.23■■□□□ 1.79
CLK3-210ENST00000563112 PTPN23Q9H3S7 1636 aa26.2■■□□□ 1.78
CLK3-210ENST00000563112 WASHC2CQ9Y4E1 1318 aa26.18■■□□□ 1.78
CLK3-210ENST00000563112 PTPRKQ15262 1439 aa26.18■■□□□ 1.78
CLK3-210ENST00000563112 FGD6Q6ZV73 1430 aa26.17■■□□□ 1.78
CLK3-210ENST00000563112 FAM135AQ9P2D6 1515 aa26.17■■□□□ 1.78
CLK3-210ENST00000563112 KDM5DQ9BY66 1539 aa26.14■■□□□ 1.78
CLK3-210ENST00000563112 STRCQ7RTU9 1775 aa26.13■■□□□ 1.77
CLK3-210ENST00000563112 ABCC5O15440 1437 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms