RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 GPATCH8Q9UKJ3 1502 aaKnown RBP15.45■□□□□ 0.06
CLK3-208ENST00000562626 TEX14Q8IWB6 1497 aa15.45■□□□□ 0.06
CLK3-208ENST00000562626 FRMPD1Q5SYB0 1578 aa15.45■□□□□ 0.06
CLK3-208ENST00000562626 SAMD9LQ8IVG5 1584 aa15.45■□□□□ 0.06
CLK3-208ENST00000562626 PLCH2O75038 1416 aa15.44■□□□□ 0.06
CLK3-208ENST00000562626 ARHGAP5Q13017 1502 aa15.43■□□□□ 0.06
CLK3-208ENST00000562626 FANCAO15360 1455 aa15.43■□□□□ 0.06
CLK3-208ENST00000562626 KDM4FA0A1W2PPD8 638 aa15.42■□□□□ 0.06
CLK3-208ENST00000562626 NEO1Q92859 1461 aa15.41■□□□□ 0.06
CLK3-208ENST00000562626 ABCC1P33527 1531 aa15.39■□□□□ 0.05
CLK3-208ENST00000562626 PPARGC1BQ86YN6 1023 aaKnown RBP15.39■□□□□ 0.05
CLK3-208ENST00000562626 ARHGEF12Q9NZN5 1544 aa15.38■□□□□ 0.05
CLK3-208ENST00000562626 AKNAQ7Z591 1439 aa15.38■□□□□ 0.05
CLK3-208ENST00000562626 CCNB3Q8WWL7 1395 aa15.36■□□□□ 0.05
CLK3-208ENST00000562626 APLP2Q06481 763 aa15.36■□□□□ 0.05
CLK3-208ENST00000562626 PHLDB1Q86UU1 1377 aa15.36■□□□□ 0.05
CLK3-208ENST00000562626 ADGRL1O94910 1474 aa15.35■□□□□ 0.05
CLK3-208ENST00000562626 SYCP2Q9BX26 1530 aa15.35■□□□□ 0.05
CLK3-208ENST00000562626 PTPN23Q9H3S7 1636 aa15.33■□□□□ 0.04
CLK3-208ENST00000562626 FBXO41Q8TF61 875 aa15.33■□□□□ 0.04
CLK3-208ENST00000562626 SIGLEC1Q9BZZ2 1709 aa15.33■□□□□ 0.04
CLK3-208ENST00000562626 MYOM3Q5VTT5 1437 aa15.33■□□□□ 0.04
CLK3-208ENST00000562626 CAMSAP2Q08AD1 1489 aa15.33■□□□□ 0.04
CLK3-208ENST00000562626 ZNF644Q9H582 1327 aaPredicted RBP15.32■□□□□ 0.04
CLK3-208ENST00000562626 SCAPERQ9BY12 1400 aa15.31■□□□□ 0.04
CLK3-208ENST00000562626 KDM5CP41229 1560 aa15.31■□□□□ 0.04
CLK3-208ENST00000562626 CROCC2H7BZ55 1655 aa15.31■□□□□ 0.04
CLK3-208ENST00000562626 KIDINS220Q9ULH0 1771 aa15.31■□□□□ 0.04
CLK3-208ENST00000562626 DENND4BO75064 1496 aaPredicted RBP15.3■□□□□ 0.04
CLK3-208ENST00000562626 RAPGEF3O95398 923 aa15.3■□□□□ 0.04
CLK3-208ENST00000562626 EFCAB2Q5VUJ9 269 aa15.3■□□□□ 0.04
CLK3-208ENST00000562626 ZMYM4Q5VZL5 1548 aa15.3■□□□□ 0.04
CLK3-208ENST00000562626 POGZQ7Z3K3 1410 aa15.3■□□□□ 0.04
CLK3-208ENST00000562626 TRAPPC8Q9Y2L5 1435 aa15.3■□□□□ 0.04
CLK3-208ENST00000562626 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
CLK3-208ENST00000562626 LMTK3Q96Q04 1460 aa15.28■□□□□ 0.04
CLK3-208ENST00000562626 CFDP1Q9UEE9 299 aaPredicted RBP15.28■□□□□ 0.04
CLK3-208ENST00000562626 ABCA6Q8N139 1617 aa15.28■□□□□ 0.04
CLK3-208ENST00000562626 MBD5Q9P267 1494 aa15.27■□□□□ 0.04
CLK3-208ENST00000562626 HECW2Q9P2P5 1572 aa15.27■□□□□ 0.03
CLK3-208ENST00000562626 INO80Q9ULG1 1556 aaPredicted RBP15.27■□□□□ 0.03
CLK3-208ENST00000562626 FGD6Q6ZV73 1430 aa15.26■□□□□ 0.03
CLK3-208ENST00000562626 ARHGEF5Q12774 1597 aa15.26■□□□□ 0.03
CLK3-208ENST00000562626 ARHGEF40Q8TER5 1519 aa15.26■□□□□ 0.03
CLK3-208ENST00000562626 ADGBQ8N7X0 1667 aa15.25■□□□□ 0.03
CLK3-208ENST00000562626 TCOF1Q13428 1488 aaKnown RBP15.25■□□□□ 0.03
CLK3-208ENST00000562626 MIA2Q96PC5 1412 aa15.25■□□□□ 0.03
CLK3-208ENST00000562626 DNMT1P26358 1616 aaKnown RBP15.25■□□□□ 0.03
CLK3-208ENST00000562626 HNRNPMP52272 730 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLK3-208ENST00000562626 ZNF518AQ6AHZ1 1483 aa15.24■□□□□ 0.03
CLK3-208ENST00000562626 DIP2CQ9Y2E4 1556 aa15.24■□□□□ 0.03
CLK3-208ENST00000562626 PLEKHH2Q8IVE3 1493 aa15.23■□□□□ 0.03
CLK3-208ENST00000562626 AFAP1Q8N556 730 aa15.23■□□□□ 0.03
CLK3-208ENST00000562626 YEATS2Q9ULM3 1422 aa15.23■□□□□ 0.03
CLK3-208ENST00000562626 KIAA1107Q9UPP5 1409 aa15.23■□□□□ 0.03
CLK3-208ENST00000562626 SOCS7O14512 581 aa15.22■□□□□ 0.03
CLK3-208ENST00000562626 ZFYVE16Q7Z3T8 1539 aa15.22■□□□□ 0.03
CLK3-208ENST00000562626 ATP7AQ04656 1500 aa15.21■□□□□ 0.03
CLK3-208ENST00000562626 CCDC141Q6ZP82 1450 aa15.19■□□□□ 0.02
CLK3-208ENST00000562626 MAST1Q9Y2H9 1570 aa15.19■□□□□ 0.02
CLK3-208ENST00000562626 MLH3Q9UHC1 1453 aa15.18■□□□□ 0.02
CLK3-208ENST00000562626 MAGI2Q86UL8 1455 aa15.15■□□□□ 0.02
CLK3-208ENST00000562626 ABCC5O15440 1437 aa15.15■□□□□ 0.02
CLK3-208ENST00000562626 DAPK1P53355 1430 aa15.15■□□□□ 0.02
CLK3-208ENST00000562626 RRBP1Q9P2E9 1410 aaKnown RBP15.15■□□□□ 0.02
CLK3-208ENST00000562626 PLXNC1O60486 1568 aa15.14■□□□□ 0.01
CLK3-208ENST00000562626 BCORL1Q5H9F3 1711 aa15.13■□□□□ 0.01
CLK3-208ENST00000562626 REREQ9P2R6 1566 aa15.12■□□□□ 0.01
CLK3-208ENST00000562626 PTPRKQ15262 1439 aa15.12■□□□□ 0.01
CLK3-208ENST00000562626 SHANK2Q9UPX8 1470 aa15.11■□□□□ 0.01
CLK3-208ENST00000562626 SPAG9O60271 1321 aaKnown RBP15.11■□□□□ 0.01
CLK3-208ENST00000562626 C9orf84Q5VXU9 1444 aa15.1■□□□□ 0.01
CLK3-208ENST00000562626 ATP10AO60312 1499 aa15.1■□□□□ 0.01
CLK3-208ENST00000562626 FAM50AQ14320 339 aaKnown RBP15.1■□□□□ 0.01
CLK3-208ENST00000562626 ADAMTSL3P82987 1691 aa15.09■□□□□ 0.01
CLK3-208ENST00000562626 ILDR2Q71H61 639 aa15.09■□□□□ 0.01
CLK3-208ENST00000562626 RTEL1-TNFRSF6BF6WH68 1400 aa15.09■□□□□ 0.01
CLK3-208ENST00000562626 FER1L4A9Z1Z3 1794 aa15.08■□□□□ 0.01
CLK3-208ENST00000562626 MADDQ8WXG6 1647 aa15.07■□□□□ 0
CLK3-208ENST00000562626 MYT1LQ9UL68 1186 aa15.05■□□□□ -0
CLK3-208ENST00000562626 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.05■□□□□ -0
CLK3-208ENST00000562626 ADGRL2O95490 1459 aa15.05■□□□□ -0
CLK3-208ENST00000562626 A2MP01023 1474 aa15.05■□□□□ -0
CLK3-208ENST00000562626 RIMS1Q86UR5 1692 aaKnown RBP15.05■□□□□ -0
CLK3-208ENST00000562626 GCC2Q8IWJ2 1684 aa15.04■□□□□ -0
CLK3-208ENST00000562626 AGLP35573 1532 aa15.04■□□□□ -0
CLK3-208ENST00000562626 EIF2AK4Q9P2K8 1649 aaKnown RBP15.03■□□□□ -0
CLK3-208ENST00000562626 RSPH4AQ5TD94 716 aa15.03■□□□□ -0
CLK3-208ENST00000562626 CHIC2Q9UKJ5 165 aa15.03■□□□□ -0
CLK3-208ENST00000562626 MROH1Q8NDA8 1641 aa15.03■□□□□ -0
CLK3-208ENST00000562626 ITGAEP38570 1179 aa15.02■□□□□ -0
CLK3-208ENST00000562626 CEP152O94986 1710 aa15.02□□□□□ -0.01
CLK3-208ENST00000562626 RNF17Q9BXT8 1623 aaKnown RBP15.02□□□□□ -0.01
CLK3-208ENST00000562626 NCOA1Q15788 1441 aa15.01□□□□□ -0.01
CLK3-208ENST00000562626 CLTCQ00610 1675 aaKnown RBP15.01□□□□□ -0.01
CLK3-208ENST00000562626 DUOX2Q9NRD8 1548 aa15.01□□□□□ -0.01
CLK3-208ENST00000562626 DEPDC5O75140 1603 aa15□□□□□ -0.01
CLK3-208ENST00000562626 TSPY4P0CV99 314 aa15□□□□□ -0.01
CLK3-208ENST00000562626 TSPY10P0CW01 314 aa15□□□□□ -0.01
CLK3-208ENST00000562626 DHX29Q7Z478 1369 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms