RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 LRRC9Q6ZRR7 1453 aa36.84■■■■□ 3.49
SMPD3-202ENST00000561749 EFCAB2Q5VUJ9 269 aa36.84■■■■□ 3.49
SMPD3-202ENST00000561749 FRMPD1Q5SYB0 1578 aa36.81■■■■□ 3.48
SMPD3-202ENST00000561749 ADGRL1O94910 1474 aa36.81■■■■□ 3.48
SMPD3-202ENST00000561749 RAPGEF3O95398 923 aa36.8■■■■□ 3.48
SMPD3-202ENST00000561749 APLP2Q06481 763 aa36.8■■■■□ 3.48
SMPD3-202ENST00000561749 KANK4Q5T7N3 995 aaPredicted RBP36.8■■■■□ 3.48
SMPD3-202ENST00000561749 GPATCH8Q9UKJ3 1502 aaKnown RBP36.8■■■■□ 3.48
SMPD3-202ENST00000561749 CCNB3Q8WWL7 1395 aa36.79■■■■□ 3.48
SMPD3-202ENST00000561749 RICTORQ6R327 1708 aa36.79■■■■□ 3.48
SMPD3-202ENST00000561749 DENND4BO75064 1496 aaPredicted RBP36.77■■■■□ 3.48
SMPD3-202ENST00000561749 NCOA2Q15596 1464 aa36.76■■■■□ 3.48
SMPD3-202ENST00000561749 SCAPERQ9BY12 1400 aa36.75■■■■□ 3.47
SMPD3-202ENST00000561749 ITSN2Q9NZM3 1697 aa36.74■■■■□ 3.47
SMPD3-202ENST00000561749 ZNF777Q9ULD5 760 aaPredicted RBP36.7■■■■□ 3.47
SMPD3-202ENST00000561749 SAMD9LQ8IVG5 1584 aa36.68■■■■□ 3.46
SMPD3-202ENST00000561749 ABCC1P33527 1531 aa36.66■■■■□ 3.46
SMPD3-202ENST00000561749 CFDP1Q9UEE9 299 aaPredicted RBP36.66■■■■□ 3.46
SMPD3-202ENST00000561749 POGZQ7Z3K3 1410 aa36.65■■■■□ 3.46
SMPD3-202ENST00000561749 ARHGEF12Q9NZN5 1544 aa36.61■■■■□ 3.45
SMPD3-202ENST00000561749 ZMYM4Q5VZL5 1548 aa36.58■■■■□ 3.45
SMPD3-202ENST00000561749 SYCP2Q9BX26 1530 aa36.57■■■■□ 3.44
SMPD3-202ENST00000561749 TRAPPC8Q9Y2L5 1435 aa36.54■■■■□ 3.44
SMPD3-202ENST00000561749 ZNF518AQ6AHZ1 1483 aa36.54■■■■□ 3.44
SMPD3-202ENST00000561749 AFAP1Q8N556 730 aa36.53■■■■□ 3.44
SMPD3-202ENST00000561749 ZNF644Q9H582 1327 aaPredicted RBP36.53■■■■□ 3.44
SMPD3-202ENST00000561749 ARHGEF40Q8TER5 1519 aa36.51■■■■□ 3.44
SMPD3-202ENST00000561749 KDM5CP41229 1560 aa36.5■■■■□ 3.43
SMPD3-202ENST00000561749 ZFYVE16Q7Z3T8 1539 aa36.49■■■■□ 3.43
SMPD3-202ENST00000561749 HNRNPMP52272 730 aaKnown RBP eCLIP36.49■■■■□ 3.43
SMPD3-202ENST00000561749 PLEKHH2Q8IVE3 1493 aa36.49■■■■□ 3.43
SMPD3-202ENST00000561749 YEATS2Q9ULM3 1422 aa36.48■■■■□ 3.43
SMPD3-202ENST00000561749 MYOM3Q5VTT5 1437 aa36.46■■■■□ 3.43
SMPD3-202ENST00000561749 HECW2Q9P2P5 1572 aa36.45■■■■□ 3.43
SMPD3-202ENST00000561749 CAMSAP2Q08AD1 1489 aa36.45■■■■□ 3.43
SMPD3-202ENST00000561749 KIAA1107Q9UPP5 1409 aa36.44■■■■□ 3.42
SMPD3-202ENST00000561749 MAGI2Q86UL8 1455 aa36.43■■■■□ 3.42
SMPD3-202ENST00000561749 MYT1LQ9UL68 1186 aa36.42■■■■□ 3.42
SMPD3-202ENST00000561749 PPARGC1BQ86YN6 1023 aaKnown RBP36.39■■■■□ 3.42
SMPD3-202ENST00000561749 KIDINS220Q9ULH0 1771 aa36.36■■■■□ 3.41
SMPD3-202ENST00000561749 MBD5Q9P267 1494 aa36.35■■■■□ 3.41
SMPD3-202ENST00000561749 ABCA6Q8N139 1617 aa36.34■■■■□ 3.41
SMPD3-202ENST00000561749 SIGLEC1Q9BZZ2 1709 aa36.34■■■■□ 3.41
SMPD3-202ENST00000561749 MLH3Q9UHC1 1453 aa36.34■■■■□ 3.41
SMPD3-202ENST00000561749 MIA2Q96PC5 1412 aa36.34■■■■□ 3.41
SMPD3-202ENST00000561749 DIP2CQ9Y2E4 1556 aa36.32■■■■□ 3.41
SMPD3-202ENST00000561749 PTPN23Q9H3S7 1636 aa36.3■■■■□ 3.4
SMPD3-202ENST00000561749 ATP10AO60312 1499 aa36.29■■■■□ 3.4
SMPD3-202ENST00000561749 SPAG9O60271 1321 aaKnown RBP36.29■■■■□ 3.4
SMPD3-202ENST00000561749 INO80Q9ULG1 1556 aaPredicted RBP36.28■■■■□ 3.4
SMPD3-202ENST00000561749 KDM4FA0A1W2PPD8 638 aa36.28■■■■□ 3.4
SMPD3-202ENST00000561749 ARID4BQ4LE39 1312 aaPredicted RBP36.28■■■■□ 3.4
SMPD3-202ENST00000561749 FGD6Q6ZV73 1430 aa36.27■■■■□ 3.4
SMPD3-202ENST00000561749 ATP7AQ04656 1500 aa36.27■■■■□ 3.4
SMPD3-202ENST00000561749 CCDC141Q6ZP82 1450 aa36.26■■■■□ 3.4
SMPD3-202ENST00000561749 ARHGEF5Q12774 1597 aa36.26■■■■□ 3.39
SMPD3-202ENST00000561749 C9orf84Q5VXU9 1444 aa36.25■■■■□ 3.39
SMPD3-202ENST00000561749 BCORL1Q5H9F3 1711 aa36.2■■■■□ 3.39
SMPD3-202ENST00000561749 TCOF1Q13428 1488 aaKnown RBP36.17■■■■□ 3.38
SMPD3-202ENST00000561749 RSPH4AQ5TD94 716 aa36.15■■■■□ 3.38
SMPD3-202ENST00000561749 REREQ9P2R6 1566 aa36.14■■■■□ 3.38
SMPD3-202ENST00000561749 ADAMTSL3P82987 1691 aa36.13■■■■□ 3.37
SMPD3-202ENST00000561749 CROCC2H7BZ55 1655 aa36.11■■■■□ 3.37
SMPD3-202ENST00000561749 ADGBQ8N7X0 1667 aa36.11■■■■□ 3.37
SMPD3-202ENST00000561749 AEBP2Q6ZN18 517 aaPredicted RBP36.11■■■■□ 3.37
SMPD3-202ENST00000561749 MLECQ14165 292 aa36.1■■■■□ 3.37
SMPD3-202ENST00000561749 RTEL1-TNFRSF6BF6WH68 1400 aa36.09■■■■□ 3.37
SMPD3-202ENST00000561749 DNMT1P26358 1616 aaKnown RBP36.08■■■■□ 3.37
SMPD3-202ENST00000561749 TSPY4P0CV99 314 aa36.08■■■■□ 3.37
SMPD3-202ENST00000561749 TSPY10P0CW01 314 aa36.08■■■■□ 3.37
SMPD3-202ENST00000561749 MADDQ8WXG6 1647 aa36.08■■■■□ 3.37
SMPD3-202ENST00000561749 FAM50AQ14320 339 aaKnown RBP36.07■■■■□ 3.36
SMPD3-202ENST00000561749 MAST1Q9Y2H9 1570 aa36.06■■■■□ 3.36
SMPD3-202ENST00000561749 A2MP01023 1474 aa36.05■■■■□ 3.36
SMPD3-202ENST00000561749 ABCC5O15440 1437 aa36.04■■■■□ 3.36
SMPD3-202ENST00000561749 DAPK1P53355 1430 aa36.02■■■■□ 3.36
SMPD3-202ENST00000561749 AGLP35573 1532 aa36.02■■■■□ 3.36
SMPD3-202ENST00000561749 PLXNC1O60486 1568 aa36.02■■■■□ 3.36
SMPD3-202ENST00000561749 RIMS1Q86UR5 1692 aaKnown RBP36.01■■■■□ 3.36
SMPD3-202ENST00000561749 FER1L4A9Z1Z3 1794 aa36.01■■■■□ 3.35
SMPD3-202ENST00000561749 SHANK2Q9UPX8 1470 aa35.96■■■■□ 3.35
SMPD3-202ENST00000561749 DHX29Q7Z478 1369 aaKnown RBP35.9■■■■□ 3.34
SMPD3-202ENST00000561749 CHIC2Q9UKJ5 165 aa35.9■■■■□ 3.34
SMPD3-202ENST00000561749 PTPRMP28827 1452 aa35.88■■■■□ 3.33
SMPD3-202ENST00000561749 PLPPR3Q6T4P5 718 aa35.82■■■■□ 3.32
SMPD3-202ENST00000561749 RRP7BPQ9NSQ0 103 aa35.81■■■■□ 3.32
SMPD3-202ENST00000561749 RRBP1Q9P2E9 1410 aaKnown RBP35.81■■■■□ 3.32
SMPD3-202ENST00000561749 KIF15Q9NS87 1388 aa35.8■■■■□ 3.32
SMPD3-202ENST00000561749 GGT6Q6P531 493 aa35.8■■■■□ 3.32
SMPD3-202ENST00000561749 DUOX2Q9NRD8 1548 aa35.79■■■■□ 3.32
SMPD3-202ENST00000561749 KIF3BO15066 747 aa35.79■■■■□ 3.32
SMPD3-202ENST00000561749 ITGAEP38570 1179 aa35.79■■■■□ 3.32
SMPD3-202ENST00000561749 PTPRKQ15262 1439 aa35.79■■■■□ 3.32
SMPD3-202ENST00000561749 ANKRD30AQ9BXX3 1397 aa35.77■■■■□ 3.32
SMPD3-202ENST00000561749 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.76■■■■□ 3.31
SMPD3-202ENST00000561749 CLTCQ00610 1675 aaKnown RBP35.75■■■■□ 3.31
SMPD3-202ENST00000561749 ADGRL2O95490 1459 aa35.74■■■■□ 3.31
SMPD3-202ENST00000561749 EIF2AK4Q9P2K8 1649 aaKnown RBP35.74■■■■□ 3.31
SMPD3-202ENST00000561749 ESF1Q9H501 851 aaKnown RBP35.73■■■■□ 3.31
SMPD3-202ENST00000561749 NCOA1Q15788 1441 aa35.73■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms