RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 PELP1Q8IZL8 1130 aaKnown RBP11.86□□□□□ -0.51
LRRC28-220ENST00000561253 SLC39A7Q92504 469 aa11.85□□□□□ -0.51
LRRC28-220ENST00000561253 DDX27Q96GQ7 796 aaKnown RBP11.85□□□□□ -0.51
LRRC28-220ENST00000561253 BOLA1Q9Y3E2 137 aa11.85□□□□□ -0.51
LRRC28-220ENST00000561253 MFSD10Q14728 455 aa11.83□□□□□ -0.52
LRRC28-220ENST00000561253 MYO15BQ96JP2 1530 aa11.82□□□□□ -0.52
LRRC28-220ENST00000561253 L3MBTL3Q96JM7 780 aaPredicted RBP11.82□□□□□ -0.52
LRRC28-220ENST00000561253 C7P10643 843 aa11.81□□□□□ -0.52
LRRC28-220ENST00000561253 DCAF1Q9Y4B6 1507 aa11.81□□□□□ -0.52
LRRC28-220ENST00000561253 GPHNQ9NQX3 736 aaPredicted RBP11.8□□□□□ -0.52
LRRC28-220ENST00000561253 TMC2Q8TDI7 906 aa11.79□□□□□ -0.52
LRRC28-220ENST00000561253 COLQQ9Y215 455 aaPredicted RBP11.79□□□□□ -0.52
LRRC28-220ENST00000561253 ARHGEF1Q92888 912 aaKnown RBP11.78□□□□□ -0.52
LRRC28-220ENST00000561253 TMEM121BQ9BXQ6 578 aaPredicted RBP11.78□□□□□ -0.52
LRRC28-220ENST00000561253 METRNQ9UJH8 293 aa11.78□□□□□ -0.52
LRRC28-220ENST00000561253 NACADO15069 1562 aa11.77□□□□□ -0.53
LRRC28-220ENST00000561253 POTEIP0CG38 1075 aa11.77□□□□□ -0.53
LRRC28-220ENST00000561253 PPP1R15BQ5SWA1 713 aa11.77□□□□□ -0.53
LRRC28-220ENST00000561253 TPRNQ4KMQ1 711 aa11.75□□□□□ -0.53
LRRC28-220ENST00000561253 PRKCSHP14314 528 aaPredicted RBP11.73□□□□□ -0.53
LRRC28-220ENST00000561253 POTEFA5A3E0 1075 aa11.72□□□□□ -0.53
LRRC28-220ENST00000561253 CAMK2BQ13554 666 aa11.72□□□□□ -0.53
LRRC28-220ENST00000561253 RB1CC1Q8TDY2 1594 aa11.71□□□□□ -0.53
LRRC28-220ENST00000561253 DSG2Q14126 1118 aa11.71□□□□□ -0.53
LRRC28-220ENST00000561253 C2orf72A6NCS6 295 aa11.7□□□□□ -0.54
LRRC28-220ENST00000561253 FOXK1P85037 733 aa11.69□□□□□ -0.54
LRRC28-220ENST00000561253 TULP1O00294 542 aaPredicted RBP11.67□□□□□ -0.54
LRRC28-220ENST00000561253 C3orf67Q6ZVT6 689 aa11.67□□□□□ -0.54
LRRC28-220ENST00000561253 ARIH1Q9Y4X5 557 aaPredicted RBP11.67□□□□□ -0.54
LRRC28-220ENST00000561253 KIF3CO14782 793 aa11.66□□□□□ -0.54
LRRC28-220ENST00000561253 PLPP6Q8IY26 295 aa11.66□□□□□ -0.54
LRRC28-220ENST00000561253 SEMA3EO15041 775 aa11.63□□□□□ -0.55
LRRC28-220ENST00000561253 TMEM92Q6UXU6 159 aa11.63□□□□□ -0.55
LRRC28-220ENST00000561253 EMILIN3Q9NT22 766 aa11.61□□□□□ -0.55
LRRC28-220ENST00000561253 TESPA1A2RU30 521 aaPredicted RBP11.6□□□□□ -0.55
LRRC28-220ENST00000561253 DPYSL4O14531 572 aa11.59□□□□□ -0.55
LRRC28-220ENST00000561253 LMOD2Q6P5Q4 547 aa11.59□□□□□ -0.55
LRRC28-220ENST00000561253 SMYD5Q6GMV2 418 aa11.58□□□□□ -0.56
LRRC28-220ENST00000561253 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.58□□□□□ -0.56
LRRC28-220ENST00000561253 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.57□□□□□ -0.56
LRRC28-220ENST00000561253 SPDYE16A6NNV3 312 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-220ENST00000561253 MAP3K9P80192 1104 aa11.55□□□□□ -0.56
LRRC28-220ENST00000561253 UPF1Q92900 1129 aaKnown RBP eCLIP11.53□□□□□ -0.56
LRRC28-220ENST00000561253 PDIA6Q15084 440 aa11.52□□□□□ -0.57
LRRC28-220ENST00000561253 OXER1Q8TDS5 423 aa11.49□□□□□ -0.57
LRRC28-220ENST00000561253 MLLT3P42568 568 aaPredicted RBP11.48□□□□□ -0.57
LRRC28-220ENST00000561253 TBC1D12O60347 775 aa11.46□□□□□ -0.57
LRRC28-220ENST00000561253 BICRAQ9NZM4 1560 aa11.45□□□□□ -0.58
LRRC28-220ENST00000561253 UNC13AQ9UPW8 1703 aa11.45□□□□□ -0.58
LRRC28-220ENST00000561253 SCRIBQ14160 1630 aa11.43□□□□□ -0.58
LRRC28-220ENST00000561253 SLC34A2O95436 690 aa11.43□□□□□ -0.58
LRRC28-220ENST00000561253 PTCD2Q8WV60 388 aaKnown RBP11.43□□□□□ -0.58
LRRC28-220ENST00000561253 ZNF316A6NFI3 1004 aaPredicted RBP11.42□□□□□ -0.58
LRRC28-220ENST00000561253 SCUBE2Q9NQ36 999 aa11.42□□□□□ -0.58
LRRC28-220ENST00000561253 POTEB2H3BUK9 544 aa11.41□□□□□ -0.58
LRRC28-220ENST00000561253 POTEJP0CG39 1038 aa11.41□□□□□ -0.58
LRRC28-220ENST00000561253 ZC3H15Q8WU90 426 aaKnown RBP11.41□□□□□ -0.58
LRRC28-220ENST00000561253 GRXCR2A6NFK2 248 aa11.4□□□□□ -0.58
LRRC28-220ENST00000561253 EVI5O60447 810 aa11.4□□□□□ -0.58
LRRC28-220ENST00000561253 RBM26Q5T8P6 1007 aaKnown RBP11.4□□□□□ -0.58
LRRC28-220ENST00000561253 MAMSTRQ6ZN01 415 aa11.4□□□□□ -0.58
LRRC28-220ENST00000561253 SLAIN1Q8ND83 568 aa11.38□□□□□ -0.59
LRRC28-220ENST00000561253 GPIHBP1Q8IV16 184 aa11.37□□□□□ -0.59
LRRC28-220ENST00000561253 PTGER2P43116 358 aa11.35□□□□□ -0.59
LRRC28-220ENST00000561253 DDX12PQ92771 950 aa11.35□□□□□ -0.59
LRRC28-220ENST00000561253 PCDHGA4Q9Y5G9 962 aa11.35□□□□□ -0.59
LRRC28-220ENST00000561253 DOK7Q18PE1 504 aa11.33□□□□□ -0.6
LRRC28-220ENST00000561253 SHROOM4Q9ULL8 1493 aa11.32□□□□□ -0.6
LRRC28-220ENST00000561253 ANO8Q9HCE9 1232 aaPredicted RBP11.31□□□□□ -0.6
LRRC28-220ENST00000561253 RIMBP2O15034 1052 aa11.3□□□□□ -0.6
LRRC28-220ENST00000561253 ZMYND10O75800 440 aa11.3□□□□□ -0.6
LRRC28-220ENST00000561253 OSBPP22059 807 aa11.3□□□□□ -0.6
LRRC28-220ENST00000561253 NUTM2FA1L443 756 aa11.29□□□□□ -0.6
LRRC28-220ENST00000561253 ZNF710Q8N1W2 664 aa11.27□□□□□ -0.61
LRRC28-220ENST00000561253 HOXB3P14651 431 aaPredicted RBP11.26□□□□□ -0.61
LRRC28-220ENST00000561253 SLC24A3Q9HC58 644 aa11.26□□□□□ -0.61
LRRC28-220ENST00000561253 PHF14O94880 888 aa11.25□□□□□ -0.61
LRRC28-220ENST00000561253 BARGINQ6ZT62 677 aa11.25□□□□□ -0.61
LRRC28-220ENST00000561253 ZSWIM6Q9HCJ5 1215 aa11.25□□□□□ -0.61
LRRC28-220ENST00000561253 ARSIQ5FYB1 569 aa11.24□□□□□ -0.61
LRRC28-220ENST00000561253 KRI1Q8N9T8 703 aaKnown RBP11.24□□□□□ -0.61
LRRC28-220ENST00000561253 EPAS1Q99814 870 aa11.24□□□□□ -0.61
LRRC28-220ENST00000561253 SNPHO15079 494 aa11.22□□□□□ -0.61
LRRC28-220ENST00000561253 NUDT7P0C024 238 aa11.22□□□□□ -0.61
LRRC28-220ENST00000561253 KDM4FA0A1W2PPD8 638 aa11.21□□□□□ -0.61
LRRC28-220ENST00000561253 KHSRPQ92945 711 aaKnown RBP eCLIP11.21□□□□□ -0.61
LRRC28-220ENST00000561253 FCHSD2O94868 740 aa11.2□□□□□ -0.62
LRRC28-220ENST00000561253 PRIM1P49642 420 aaKnown RBP11.2□□□□□ -0.62
LRRC28-220ENST00000561253 TYW1BQ6NUM6 668 aa11.2□□□□□ -0.62
LRRC28-220ENST00000561253 GPR153Q6NV75 609 aa11.2□□□□□ -0.62
LRRC28-220ENST00000561253 JPH4Q96JJ6 628 aa11.2□□□□□ -0.62
LRRC28-220ENST00000561253 PCDHGA10Q9Y5H3 936 aa11.2□□□□□ -0.62
LRRC28-220ENST00000561253 GPR37O15354 613 aa11.19□□□□□ -0.62
LRRC28-220ENST00000561253 MAP3K7O43318 606 aa11.19□□□□□ -0.62
LRRC28-220ENST00000561253 EN1Q05925 392 aaPredicted RBP11.19□□□□□ -0.62
LRRC28-220ENST00000561253 FBXW7Q969H0 707 aa11.19□□□□□ -0.62
LRRC28-220ENST00000561253 RBM33Q96EV2 1170 aaKnown RBP11.18□□□□□ -0.62
LRRC28-220ENST00000561253 OTUD5Q96G74 571 aa11.18□□□□□ -0.62
LRRC28-220ENST00000561253 HIC1Q14526 733 aa11.17□□□□□ -0.62
LRRC28-220ENST00000561253 AK7Q96M32 723 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms