RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 CAMSAP2Q08AD1 1489 aa17.12■□□□□ 0.33
SNX1-212ENST00000560861 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
SNX1-212ENST00000560861 PTPRKQ15262 1439 aa17.12■□□□□ 0.33
SNX1-212ENST00000560861 DNMT1P26358 1616 aaKnown RBP17.11■□□□□ 0.33
SNX1-212ENST00000560861 FAM50AQ14320 339 aaKnown RBP17.11■□□□□ 0.33
SNX1-212ENST00000560861 ARAP3Q8WWN8 1544 aa17.11■□□□□ 0.33
SNX1-212ENST00000560861 SAMD9LQ8IVG5 1584 aa17.09■□□□□ 0.33
SNX1-212ENST00000560861 KIF13AQ9H1H9 1805 aa17.07■□□□□ 0.32
SNX1-212ENST00000560861 CROCC2H7BZ55 1655 aa17.07■□□□□ 0.32
SNX1-212ENST00000560861 PLCH2O75038 1416 aa17.07■□□□□ 0.32
SNX1-212ENST00000560861 ZNF644Q9H582 1327 aaPredicted RBP17.07■□□□□ 0.32
SNX1-212ENST00000560861 CFDP1Q9UEE9 299 aaPredicted RBP17.07■□□□□ 0.32
SNX1-212ENST00000560861 ABCC5O15440 1437 aa17.05■□□□□ 0.32
SNX1-212ENST00000560861 NPM1P06748 294 aaKnown RBP eCLIP17.05■□□□□ 0.32
SNX1-212ENST00000560861 ARHGEF5Q12774 1597 aa17.05■□□□□ 0.32
SNX1-212ENST00000560861 DAPK1P53355 1430 aa17.04■□□□□ 0.32
SNX1-212ENST00000560861 KCNH8Q96L42 1107 aa17.04■□□□□ 0.32
SNX1-212ENST00000560861 AKNAQ7Z591 1439 aa17.04■□□□□ 0.32
SNX1-212ENST00000560861 ARHGAP5Q13017 1502 aa17.03■□□□□ 0.32
SNX1-212ENST00000560861 MBD5Q9P267 1494 aa17.03■□□□□ 0.32
SNX1-212ENST00000560861 GCC2Q8IWJ2 1684 aa17.02■□□□□ 0.32
SNX1-212ENST00000560861 ITGAEP38570 1179 aa17.01■□□□□ 0.31
SNX1-212ENST00000560861 GLI2P10070 1586 aa17.01■□□□□ 0.31
SNX1-212ENST00000560861 HFM1A2PYH4 1435 aa17■□□□□ 0.31
SNX1-212ENST00000560861 ADGBQ8N7X0 1667 aa17■□□□□ 0.31
SNX1-212ENST00000560861 SHANK2Q9UPX8 1470 aa16.99■□□□□ 0.31
SNX1-212ENST00000560861 SETD5Q9C0A6 1442 aa16.99■□□□□ 0.31
SNX1-212ENST00000560861 KIAA1107Q9UPP5 1409 aa16.99■□□□□ 0.31
SNX1-212ENST00000560861 ABCC1P33527 1531 aa16.99■□□□□ 0.31
SNX1-212ENST00000560861 ADGRL2O95490 1459 aa16.99■□□□□ 0.31
SNX1-212ENST00000560861 PLEKHH2Q8IVE3 1493 aa16.99■□□□□ 0.31
SNX1-212ENST00000560861 ROCK1Q13464 1354 aa16.98■□□□□ 0.31
SNX1-212ENST00000560861 NAIPQ13075 1403 aa16.97■□□□□ 0.31
SNX1-212ENST00000560861 SYCP2Q9BX26 1530 aa16.97■□□□□ 0.31
SNX1-212ENST00000560861 ARHGEF12Q9NZN5 1544 aa16.97■□□□□ 0.31
SNX1-212ENST00000560861 MAP3K4Q9Y6R4 1608 aa16.97■□□□□ 0.31
SNX1-212ENST00000560861 DIP2BQ9P265 1576 aa16.97■□□□□ 0.31
SNX1-212ENST00000560861 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
SNX1-212ENST00000560861 MAST1Q9Y2H9 1570 aa16.96■□□□□ 0.31
SNX1-212ENST00000560861 CCDC141Q6ZP82 1450 aa16.95■□□□□ 0.3
SNX1-212ENST00000560861 ZNF777Q9ULD5 760 aaPredicted RBP16.95■□□□□ 0.3
SNX1-212ENST00000560861 HRCP23327 699 aa16.94■□□□□ 0.3
SNX1-212ENST00000560861 EFCAB2Q5VUJ9 269 aa16.93■□□□□ 0.3
SNX1-212ENST00000560861 FANCAO15360 1455 aa16.93■□□□□ 0.3
SNX1-212ENST00000560861 CFAP74Q9C0B2 1584 aa16.91■□□□□ 0.3
SNX1-212ENST00000560861 C9orf84Q5VXU9 1444 aa16.91■□□□□ 0.3
SNX1-212ENST00000560861 CD109Q6YHK3 1445 aa16.91■□□□□ 0.3
SNX1-212ENST00000560861 KDM6BO15054 1643 aa16.91■□□□□ 0.3
SNX1-212ENST00000560861 NCOA1Q15788 1441 aa16.9■□□□□ 0.3
SNX1-212ENST00000560861 HNRNPMP52272 730 aaKnown RBP eCLIP16.89■□□□□ 0.29
SNX1-212ENST00000560861 RSPH4AQ5TD94 716 aa16.89■□□□□ 0.29
SNX1-212ENST00000560861 DHX57Q6P158 1386 aaKnown RBP16.89■□□□□ 0.29
SNX1-212ENST00000560861 PPRC1Q5VV67 1664 aaKnown RBP16.88■□□□□ 0.29
SNX1-212ENST00000560861 CHIC2Q9UKJ5 165 aa16.88■□□□□ 0.29
SNX1-212ENST00000560861 TRAPPC8Q9Y2L5 1435 aa16.87■□□□□ 0.29
SNX1-212ENST00000560861 PLXNC1O60486 1568 aa16.87■□□□□ 0.29
SNX1-212ENST00000560861 NEO1Q92859 1461 aa16.86■□□□□ 0.29
SNX1-212ENST00000560861 ADGRL1O94910 1474 aa16.86■□□□□ 0.29
SNX1-212ENST00000560861 RRP7BPQ9NSQ0 103 aa16.85■□□□□ 0.29
SNX1-212ENST00000560861 ANKRD30AQ9BXX3 1397 aa16.85■□□□□ 0.29
SNX1-212ENST00000560861 INO80Q9ULG1 1556 aaPredicted RBP16.84■□□□□ 0.29
SNX1-212ENST00000560861 ZFYVE16Q7Z3T8 1539 aa16.82■□□□□ 0.28
SNX1-212ENST00000560861 SCAPERQ9BY12 1400 aa16.82■□□□□ 0.28
SNX1-212ENST00000560861 CCER1Q8TC90 406 aaPredicted RBP16.81■□□□□ 0.28
SNX1-212ENST00000560861 KDM5CP41229 1560 aa16.81■□□□□ 0.28
SNX1-212ENST00000560861 RTEL1-TNFRSF6BF6WH68 1400 aa16.8■□□□□ 0.28
SNX1-212ENST00000560861 TSPOAP1O95153 1857 aa16.8■□□□□ 0.28
SNX1-212ENST00000560861 TSPY4P0CV99 314 aa16.8■□□□□ 0.28
SNX1-212ENST00000560861 TSPY10P0CW01 314 aa16.8■□□□□ 0.28
SNX1-212ENST00000560861 POGZQ7Z3K3 1410 aa16.79■□□□□ 0.28
SNX1-212ENST00000560861 KIF15Q9NS87 1388 aa16.78■□□□□ 0.28
SNX1-212ENST00000560861 FAM69CQ0P6D2 419 aa16.78■□□□□ 0.28
SNX1-212ENST00000560861 KIDINS220Q9ULH0 1771 aa16.77■□□□□ 0.28
SNX1-212ENST00000560861 CLSPNQ9HAW4 1339 aa16.77■□□□□ 0.28
SNX1-212ENST00000560861 ATP7AQ04656 1500 aa16.77■□□□□ 0.28
SNX1-212ENST00000560861 RICTORQ6R327 1708 aa16.77■□□□□ 0.28
SNX1-212ENST00000560861 ANKRD50Q9ULJ7 1429 aa16.77■□□□□ 0.27
SNX1-212ENST00000560861 DENND4BO75064 1496 aaPredicted RBP16.76■□□□□ 0.27
SNX1-212ENST00000560861 ZNF518AQ6AHZ1 1483 aa16.76■□□□□ 0.27
SNX1-212ENST00000560861 DUOX2Q9NRD8 1548 aa16.75■□□□□ 0.27
SNX1-212ENST00000560861 AFAP1Q8N556 730 aa16.75■□□□□ 0.27
SNX1-212ENST00000560861 FRMPD1Q5SYB0 1578 aa16.75■□□□□ 0.27
SNX1-212ENST00000560861 KDM5DQ9BY66 1539 aa16.75■□□□□ 0.27
SNX1-212ENST00000560861 ZEB1P37275 1124 aaPredicted RBP16.74■□□□□ 0.27
SNX1-212ENST00000560861 TEX14Q8IWB6 1497 aa16.73■□□□□ 0.27
SNX1-212ENST00000560861 MLH3Q9UHC1 1453 aa16.73■□□□□ 0.27
SNX1-212ENST00000560861 ACIN1Q9UKV3 1341 aaKnown RBP16.73■□□□□ 0.27
SNX1-212ENST00000560861 PLPPR3Q6T4P5 718 aa16.73■□□□□ 0.27
SNX1-212ENST00000560861 UNC13BO14795 1591 aa16.72■□□□□ 0.27
SNX1-212ENST00000560861 SPAG9O60271 1321 aaKnown RBP16.72■□□□□ 0.27
SNX1-212ENST00000560861 PZPP20742 1482 aa16.72■□□□□ 0.27
SNX1-212ENST00000560861 HECW2Q9P2P5 1572 aa16.72■□□□□ 0.27
SNX1-212ENST00000560861 ERBINQ96RT1 1412 aa16.71■□□□□ 0.27
SNX1-212ENST00000560861 ZMYM4Q5VZL5 1548 aa16.7■□□□□ 0.26
SNX1-212ENST00000560861 MAGI2Q86UL8 1455 aa16.7■□□□□ 0.26
SNX1-212ENST00000560861 ABCA6Q8N139 1617 aa16.68■□□□□ 0.26
SNX1-212ENST00000560861 EIF2AK4Q9P2K8 1649 aaKnown RBP16.67■□□□□ 0.26
SNX1-212ENST00000560861 DEPDC5O75140 1603 aa16.67■□□□□ 0.26
SNX1-212ENST00000560861 BCORL1Q5H9F3 1711 aa16.65■□□□□ 0.26
SNX1-212ENST00000560861 DIP2CQ9Y2E4 1556 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms