RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	RIOK3	O14730	519 aa	Known RBP	7.45	□□□□□ -1.22
SPG11-223	ENST00000560858	ARSI	Q5FYB1	569 aa		7.45	□□□□□ -1.22
SPG11-223	ENST00000560858	VGF	O15240	615 aa	Predicted RBP	7.43	□□□□□ -1.22
SPG11-223	ENST00000560858	PHF8	Q9UPP1	1060 aa		7.42	□□□□□ -1.22
SPG11-223	ENST00000560858	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	7.41	□□□□□ -1.22
SPG11-223	ENST00000560858	ZNF316	A6NFI3	1004 aa	Predicted RBP	7.41	□□□□□ -1.22
SPG11-223	ENST00000560858	ZFP91	Q96JP5	570 aa	Predicted RBP	7.41	□□□□□ -1.22
SPG11-223	ENST00000560858	MS4A4A	Q96JQ5	239 aa		7.41	□□□□□ -1.22
SPG11-223	ENST00000560858	NLRP6	P59044	892 aa		7.4	□□□□□ -1.22
SPG11-223	ENST00000560858	TAOK2	Q9UL54	1235 aa		7.4	□□□□□ -1.22
SPG11-223	ENST00000560858	LSM11	P83369	360 aa	Known RBP eCLIP	7.39	□□□□□ -1.23
SPG11-223	ENST00000560858	PBX2	P40425	430 aa		7.36	□□□□□ -1.23
SPG11-223	ENST00000560858	KHSRP	Q92945	711 aa	Known RBP eCLIP	7.36	□□□□□ -1.23	9e-6	■■■□□ 17.9
SPG11-223	ENST00000560858	RNF25	Q96BH1	459 aa	Predicted RBP	7.36	□□□□□ -1.23
SPG11-223	ENST00000560858	HCST	Q9UBK5	93 aa		7.33	□□□□□ -1.24
SPG11-223	ENST00000560858	NUDT7	P0C024	238 aa		7.32	□□□□□ -1.24
SPG11-223	ENST00000560858	BCL11B	Q9C0K0	894 aa	Predicted RBP	7.32	□□□□□ -1.24
SPG11-223	ENST00000560858	FBXO22	Q8NEZ5	403 aa		7.31	□□□□□ -1.24
SPG11-223	ENST00000560858	PLA2G2E	Q9NZK7	142 aa		7.31	□□□□□ -1.24
SPG11-223	ENST00000560858	C2orf72	A6NCS6	295 aa		7.3	□□□□□ -1.24
SPG11-223	ENST00000560858	STK24	Q9Y6E0	443 aa		7.3	□□□□□ -1.24
SPG11-223	ENST00000560858	KIF3C	O14782	793 aa		7.29	□□□□□ -1.24
SPG11-223	ENST00000560858	SLC34A2	O95436	690 aa		7.29	□□□□□ -1.24
SPG11-223	ENST00000560858	LHX6	Q9UPM6	363 aa		7.29	□□□□□ -1.24
SPG11-223	ENST00000560858	AXIN2	Q9Y2T1	843 aa		7.29	□□□□□ -1.24
SPG11-223	ENST00000560858	PCDHGA4	Q9Y5G9	962 aa		7.29	□□□□□ -1.24
SPG11-223	ENST00000560858	PSD	A5PKW4	1024 aa	Predicted RBP	7.28	□□□□□ -1.24
SPG11-223	ENST00000560858	TMC2	Q8TDI7	906 aa		7.28	□□□□□ -1.24
SPG11-223	ENST00000560858	MFRP	Q9BY79	579 aa		7.27	□□□□□ -1.25
SPG11-223	ENST00000560858	STK25	O00506	426 aa		7.26	□□□□□ -1.25
SPG11-223	ENST00000560858	ARHGAP33	O14559	1287 aa		7.26	□□□□□ -1.25
SPG11-223	ENST00000560858	ADGRD1	Q6QNK2	874 aa		7.25	□□□□□ -1.25
SPG11-223	ENST00000560858	POTEE	Q6S8J3	1075 aa		7.24	□□□□□ -1.25
SPG11-223	ENST00000560858	STAC3	Q96MF2	364 aa		7.23	□□□□□ -1.25
SPG11-223	ENST00000560858	TK2	O00142	265 aa		7.21	□□□□□ -1.26
SPG11-223	ENST00000560858	KCNH8	Q96L42	1107 aa		7.18	□□□□□ -1.26
SPG11-223	ENST00000560858	TBC1D12	O60347	775 aa		7.17	□□□□□ -1.26
SPG11-223	ENST00000560858	ECM2	O94769	699 aa	Predicted RBP	7.17	□□□□□ -1.26
SPG11-223	ENST00000560858	HR	O43593	1189 aa		7.16	□□□□□ -1.26
SPG11-223	ENST00000560858	PPP4R3B	Q5MIZ7	849 aa		7.16	□□□□□ -1.26
SPG11-223	ENST00000560858	PTCD2	Q8WV60	388 aa	Known RBP	7.16	□□□□□ -1.26
SPG11-223	ENST00000560858	KCTD12	Q96CX2	325 aa	Known RBP	7.16	□□□□□ -1.26
SPG11-223	ENST00000560858	PSEN2	P49810	448 aa		7.15	□□□□□ -1.26
SPG11-223	ENST00000560858	KDM4F	A0A1W2PPD8	638 aa		7.14	□□□□□ -1.27
SPG11-223	ENST00000560858	DMRTA1	Q5VZB9	504 aa		7.14	□□□□□ -1.27
SPG11-223	ENST00000560858	FOXK1	P85037	733 aa		7.12	□□□□□ -1.27
SPG11-223	ENST00000560858	PPP1R37	O75864	691 aa		7.11	□□□□□ -1.27
SPG11-223	ENST00000560858	PLPP6	Q8IY26	295 aa		7.11	□□□□□ -1.27
SPG11-223	ENST00000560858	RGS20	O76081	388 aa		7.1	□□□□□ -1.27
SPG11-223	ENST00000560858	GPHN	Q9NQX3	736 aa	Predicted RBP	7.1	□□□□□ -1.27
SPG11-223	ENST00000560858	PTPN5	P54829	565 aa		7.09	□□□□□ -1.27
SPG11-223	ENST00000560858	KCNK17	Q96T54	332 aa		7.09	□□□□□ -1.27
SPG11-223	ENST00000560858	RGL2	O15211	777 aa		7.07	□□□□□ -1.28
SPG11-223	ENST00000560858	VPS9D1	Q9Y2B5	631 aa		7.07	□□□□□ -1.28
SPG11-223	ENST00000560858	GOLGA8CP	A6NN73	597 aa		7.05	□□□□□ -1.28
SPG11-223	ENST00000560858	DSG2	Q14126	1118 aa		7.05	□□□□□ -1.28
SPG11-223	ENST00000560858	IFFO2	Q5TF58	517 aa		7.05	□□□□□ -1.28
SPG11-223	ENST00000560858	IRX2	Q9BZI1	471 aa	Predicted RBP	7.05	□□□□□ -1.28
SPG11-223	ENST00000560858	SLC4A5	Q9BY07	1137 aa		7.04	□□□□□ -1.28
SPG11-223	ENST00000560858	PKD2	Q13563	968 aa		7.03	□□□□□ -1.28
SPG11-223	ENST00000560858	ZNF454	Q8N9F8	522 aa		7.03	□□□□□ -1.28
SPG11-223	ENST00000560858	PTPRE	P23469	700 aa		7.01	□□□□□ -1.29
SPG11-223	ENST00000560858	THSD4	Q6ZMP0	1018 aa		7.01	□□□□□ -1.29
SPG11-223	ENST00000560858	MRPL50	Q8N5N7	158 aa	Known RBP	7.01	□□□□□ -1.29
SPG11-223	ENST00000560858	BCL2L12	Q9HB09	334 aa		7.01	□□□□□ -1.29
SPG11-223	ENST00000560858	OXER1	Q8TDS5	423 aa		7	□□□□□ -1.29
SPG11-223	ENST00000560858	WNT2B	Q93097	391 aa		7	□□□□□ -1.29
SPG11-223	ENST00000560858	BHMG1	C9JSJ3	638 aa	Predicted RBP	6.99	□□□□□ -1.29
SPG11-223	ENST00000560858	UPF1	Q92900	1129 aa	Known RBP eCLIP	6.99	□□□□□ -1.29
SPG11-223	ENST00000560858		A0A0G2JS52	829 aa		6.98	□□□□□ -1.29
SPG11-223	ENST00000560858	NBPF3	Q9H094	633 aa		6.97	□□□□□ -1.29
SPG11-223	ENST00000560858	FOSB	P53539	338 aa		6.96	□□□□□ -1.3
SPG11-223	ENST00000560858	ZBED2	Q9BTP6	218 aa		6.96	□□□□□ -1.3
SPG11-223	ENST00000560858	RYDEN	Q9NUL5	291 aa	Known RBP	6.96	□□□□□ -1.3
SPG11-223	ENST00000560858	HS6ST3	Q8IZP7	471 aa		6.95	□□□□□ -1.3
SPG11-223	ENST00000560858	ZDHHC16	Q969W1	377 aa		6.94	□□□□□ -1.3
SPG11-223	ENST00000560858	PPP1R15B	Q5SWA1	713 aa		6.93	□□□□□ -1.3
SPG11-223	ENST00000560858	JPH4	Q96JJ6	628 aa		6.93	□□□□□ -1.3
SPG11-223	ENST00000560858	ANO8	Q9HCE9	1232 aa	Predicted RBP	6.93	□□□□□ -1.3
SPG11-223	ENST00000560858	PDE4A	P27815	886 aa		6.92	□□□□□ -1.3
SPG11-223	ENST00000560858	EVI5	O60447	810 aa		6.91	□□□□□ -1.3
SPG11-223	ENST00000560858	CHGA	P10645	457 aa	Known RBP	6.91	□□□□□ -1.3
SPG11-223	ENST00000560858	CRISPLD2	Q9H0B8	497 aa		6.91	□□□□□ -1.3
SPG11-223	ENST00000560858	ANKK1	Q8NFD2	765 aa		6.9	□□□□□ -1.3
SPG11-223	ENST00000560858		Q6ZNB5	142 aa		6.89	□□□□□ -1.31
SPG11-223	ENST00000560858	ADAM33	Q9BZ11	813 aa		6.89	□□□□□ -1.31
SPG11-223	ENST00000560858	RABGEF1	Q9UJ41	708 aa		6.89	□□□□□ -1.31
SPG11-223	ENST00000560858	MAP3K9	P80192	1104 aa		6.88	□□□□□ -1.31
SPG11-223	ENST00000560858	NYAP1	Q6ZVC0	841 aa		6.88	□□□□□ -1.31
SPG11-223	ENST00000560858	ITGBL1	O95965	494 aa	Predicted RBP	6.87	□□□□□ -1.31
SPG11-223	ENST00000560858	LAPTM4B	Q86VI4	370 aa		6.86	□□□□□ -1.31
SPG11-223	ENST00000560858	PPP1R3G	B7ZBB8	358 aa		6.85	□□□□□ -1.31
SPG11-223	ENST00000560858	KCNC4	Q03721	635 aa		6.85	□□□□□ -1.31
SPG11-223	ENST00000560858	DNAJC5	Q9H3Z4	198 aa		6.85	□□□□□ -1.31
SPG11-223	ENST00000560858	SOWAHB	A6NEL2	793 aa		6.84	□□□□□ -1.31
SPG11-223	ENST00000560858	LAPTM4A	Q15012	233 aa		6.84	□□□□□ -1.31
SPG11-223	ENST00000560858	LARP6	Q9BRS8	491 aa	Known RBP	6.84	□□□□□ -1.31
SPG11-223	ENST00000560858	NCKAP5L	Q9HCH0	1330 aa		6.83	□□□□□ -1.32
SPG11-223	ENST00000560858	FBXW7	Q969H0	707 aa		6.83	□□□□□ -1.32
SPG11-223	ENST00000560858	DDX27	Q96GQ7	796 aa	Known RBP	6.83	□□□□□ -1.32

Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms