RNA–Protein interactions for RNA: ENST00000560842.1

PSMA4-221, Transcript of proteasome subunit alpha 4, humanhuman

TSL 1 (best)

Gene PSMA4, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-221ENST00000560842 PHF8Q9UPP1 1060 aa13.49□□□□□ -0.25
PSMA4-221ENST00000560842 GPR153Q6NV75 609 aa13.48□□□□□ -0.25
PSMA4-221ENST00000560842 ZNF687Q8N1G0 1237 aa13.46□□□□□ -0.25
PSMA4-221ENST00000560842 RNF166Q96A37 237 aaPredicted RBP13.42□□□□□ -0.26
PSMA4-221ENST00000560842 NLRP6P59044 892 aa13.38□□□□□ -0.27
PSMA4-221ENST00000560842 ARSIQ5FYB1 569 aa13.37□□□□□ -0.27
PSMA4-221ENST00000560842 MYT1LQ9UL68 1186 aa13.37□□□□□ -0.27
PSMA4-221ENST00000560842 FBXO22Q8NEZ5 403 aa13.36□□□□□ -0.27
PSMA4-221ENST00000560842 TAOK2Q9UL54 1235 aa13.33□□□□□ -0.28
PSMA4-221ENST00000560842 BCL11BQ9C0K0 894 aaPredicted RBP13.32□□□□□ -0.28
PSMA4-221ENST00000560842 ZNF316A6NFI3 1004 aaPredicted RBP13.3□□□□□ -0.28
PSMA4-221ENST00000560842 PTGER2P43116 358 aa13.3□□□□□ -0.28
PSMA4-221ENST00000560842 KHSRPQ92945 711 aaKnown RBP eCLIP13.29□□□□□ -0.28
PSMA4-221ENST00000560842 MFRPQ9BY79 579 aa13.27□□□□□ -0.29
PSMA4-221ENST00000560842 STK24Q9Y6E0 443 aa13.27□□□□□ -0.29
PSMA4-221ENST00000560842 KIF3CO14782 793 aa13.25□□□□□ -0.29
PSMA4-221ENST00000560842 ANKRD13DQ6ZTN6 518 aa13.24□□□□□ -0.29
PSMA4-221ENST00000560842 C2orf72A6NCS6 295 aa13.21□□□□□ -0.29
PSMA4-221ENST00000560842 STK25O00506 426 aa13.19□□□□□ -0.3
PSMA4-221ENST00000560842 LSM11P83369 360 aaKnown RBP eCLIP13.19□□□□□ -0.3
PSMA4-221ENST00000560842 SLC34A2O95436 690 aa13.16□□□□□ -0.3
PSMA4-221ENST00000560842 NUDT7P0C024 238 aa13.16□□□□□ -0.3
PSMA4-221ENST00000560842 ECM2O94769 699 aaPredicted RBP13.14□□□□□ -0.31
PSMA4-221ENST00000560842 PBX2P40425 430 aa13.14□□□□□ -0.31
PSMA4-221ENST00000560842 LHX6Q9UPM6 363 aa13.12□□□□□ -0.31
PSMA4-221ENST00000560842 PCDHGA4Q9Y5G9 962 aa13.12□□□□□ -0.31
PSMA4-221ENST00000560842 POTEEQ6S8J3 1075 aa13.1□□□□□ -0.31
PSMA4-221ENST00000560842 TMC2Q8TDI7 906 aa13.08□□□□□ -0.32
PSMA4-221ENST00000560842 AXIN2Q9Y2T1 843 aa13.06□□□□□ -0.32
PSMA4-221ENST00000560842 RGL2O15211 777 aa13.04□□□□□ -0.32
PSMA4-221ENST00000560842 PKD2Q13563 968 aa13.02□□□□□ -0.33
PSMA4-221ENST00000560842 PPP1R37O75864 691 aa13.01□□□□□ -0.33
PSMA4-221ENST00000560842 PSDA5PKW4 1024 aaPredicted RBP12.99□□□□□ -0.33
PSMA4-221ENST00000560842 ARHGAP33O14559 1287 aa12.99□□□□□ -0.33
PSMA4-221ENST00000560842 KDM4FA0A1W2PPD8 638 aa12.98□□□□□ -0.33
PSMA4-221ENST00000560842 ADGRD1Q6QNK2 874 aa12.96□□□□□ -0.33
PSMA4-221ENST00000560842 PTCD2Q8WV60 388 aaKnown RBP12.96□□□□□ -0.33
PSMA4-221ENST00000560842 HCSTQ9UBK5 93 aa12.95□□□□□ -0.34
PSMA4-221ENST00000560842 PLA2G2EQ9NZK7 142 aa12.92□□□□□ -0.34
PSMA4-221ENST00000560842 FOXK1P85037 733 aa12.91□□□□□ -0.34
PSMA4-221ENST00000560842 TK2O00142 265 aa12.9□□□□□ -0.34
PSMA4-221ENST00000560842 HRO43593 1189 aa12.88□□□□□ -0.35
PSMA4-221ENST00000560842 PLPP6Q8IY26 295 aa12.88□□□□□ -0.35
PSMA4-221ENST00000560842 GPHNQ9NQX3 736 aaPredicted RBP12.88□□□□□ -0.35
PSMA4-221ENST00000560842 PSEN2P49810 448 aa12.86□□□□□ -0.35
PSMA4-221ENST00000560842 DMRTA1Q5VZB9 504 aa12.86□□□□□ -0.35
PSMA4-221ENST00000560842 TBC1D12O60347 775 aa12.83□□□□□ -0.36
PSMA4-221ENST00000560842 PPP4R3BQ5MIZ7 849 aa12.83□□□□□ -0.36
PSMA4-221ENST00000560842 DSG2Q14126 1118 aa12.82□□□□□ -0.36
PSMA4-221ENST00000560842 HS6ST3Q8IZP7 471 aa12.79□□□□□ -0.36
PSMA4-221ENST00000560842 KCTD12Q96CX2 325 aaKnown RBP12.75□□□□□ -0.37
PSMA4-221ENST00000560842 STAC3Q96MF2 364 aa12.74□□□□□ -0.37
PSMA4-221ENST00000560842 KCNH8Q96L42 1107 aa12.72□□□□□ -0.37
PSMA4-221ENST00000560842 KCNK17Q96T54 332 aa12.72□□□□□ -0.37
PSMA4-221ENST00000560842 OXER1Q8TDS5 423 aa12.71□□□□□ -0.37
PSMA4-221ENST00000560842 VPS9D1Q9Y2B5 631 aa12.69□□□□□ -0.38
PSMA4-221ENST00000560842 AMER1Q5JTC6 1135 aaPredicted RBP12.68□□□□□ -0.38
PSMA4-221ENST00000560842 SLC4A5Q9BY07 1137 aa12.66□□□□□ -0.38
PSMA4-221ENST00000560842 DNAJC5Q9H3Z4 198 aa12.66□□□□□ -0.38
PSMA4-221ENST00000560842 CHGAP10645 457 aaKnown RBP12.65□□□□□ -0.38
PSMA4-221ENST00000560842 BCL2L12Q9HB09 334 aa12.65□□□□□ -0.38
PSMA4-221ENST00000560842 ZNF454Q8N9F8 522 aa12.64□□□□□ -0.39
PSMA4-221ENST00000560842 UPF1Q92900 1129 aaKnown RBP eCLIP12.64□□□□□ -0.39
PSMA4-221ENST00000560842 CRISPLD2Q9H0B8 497 aa12.63□□□□□ -0.39
PSMA4-221ENST00000560842 NKX1-1Q15270 411 aaPredicted RBP12.62□□□□□ -0.39
PSMA4-221ENST00000560842 BHMG1C9JSJ3 638 aaPredicted RBP12.61□□□□□ -0.39
PSMA4-221ENST00000560842 PTPN5P54829 565 aa12.61□□□□□ -0.39
PSMA4-221ENST00000560842 RTN4Q9NQC3 1192 aaKnown RBP12.61□□□□□ -0.39
PSMA4-221ENST00000560842 RYDENQ9NUL5 291 aaKnown RBP12.61□□□□□ -0.39
PSMA4-221ENST00000560842 FOSBP53539 338 aa12.6□□□□□ -0.39
PSMA4-221ENST00000560842 PPP1R15BQ5SWA1 713 aa12.6□□□□□ -0.39
PSMA4-221ENST00000560842 PTPREP23469 700 aa12.58□□□□□ -0.4
PSMA4-221ENST00000560842 IFFO2Q5TF58 517 aa12.58□□□□□ -0.4
PSMA4-221ENST00000560842 ANO8Q9HCE9 1232 aaPredicted RBP12.58□□□□□ -0.4
PSMA4-221ENST00000560842 ZBED2Q9BTP6 218 aa12.56□□□□□ -0.4
PSMA4-221ENST00000560842 PDE4AP27815 886 aa12.55□□□□□ -0.4
PSMA4-221ENST00000560842 THSD4Q6ZMP0 1018 aa12.55□□□□□ -0.4
PSMA4-221ENST00000560842 RGS20O76081 388 aa12.54□□□□□ -0.4
PSMA4-221ENST00000560842 NCKAP5LQ9HCH0 1330 aa12.54□□□□□ -0.4
PSMA4-221ENST00000560842 JPH4Q96JJ6 628 aa12.53□□□□□ -0.4
PSMA4-221ENST00000560842 MRPL50Q8N5N7 158 aaKnown RBP12.51□□□□□ -0.41
PSMA4-221ENST00000560842 GOLGA8CPA6NN73 597 aa12.5□□□□□ -0.41
PSMA4-221ENST00000560842 EVI5O60447 810 aa12.5□□□□□ -0.41
PSMA4-221ENST00000560842 WNT2BQ93097 391 aa12.5□□□□□ -0.41
PSMA4-221ENST00000560842 ZDHHC16Q969W1 377 aa12.5□□□□□ -0.41
PSMA4-221ENST00000560842 ADAM33Q9BZ11 813 aa12.48□□□□□ -0.41
PSMA4-221ENST00000560842 NBPF3Q9H094 633 aa12.45□□□□□ -0.42
PSMA4-221ENST00000560842 A0A0G2JS52 829 aa12.44□□□□□ -0.42
PSMA4-221ENST00000560842 LARP6Q9BRS8 491 aaKnown RBP12.43□□□□□ -0.42
PSMA4-221ENST00000560842 MAP3K9P80192 1104 aa12.42□□□□□ -0.42
PSMA4-221ENST00000560842 DDX27Q96GQ7 796 aaKnown RBP12.42□□□□□ -0.42
PSMA4-221ENST00000560842 GTPBP6O43824 516 aaPredicted RBP12.4□□□□□ -0.42
PSMA4-221ENST00000560842 MFSD10Q14728 455 aa12.4□□□□□ -0.42
PSMA4-221ENST00000560842 IRX2Q9BZI1 471 aaPredicted RBP12.39□□□□□ -0.43
PSMA4-221ENST00000560842 PPP1R3GB7ZBB8 358 aa12.38□□□□□ -0.43
PSMA4-221ENST00000560842 RABGEF1Q9UJ41 708 aa12.38□□□□□ -0.43
PSMA4-221ENST00000560842 PCDHGA10Q9Y5H3 936 aa12.37□□□□□ -0.43
PSMA4-221ENST00000560842 EMILIN3Q9NT22 766 aa12.36□□□□□ -0.43
PSMA4-221ENST00000560842 PROX2Q3B8N5 592 aa12.33□□□□□ -0.44
PSMA4-221ENST00000560842 ANKK1Q8NFD2 765 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms