RNA–Protein interactions for RNA: ENST00000560595.5

ETFA-215, Transcript of electron transfer flavoprotein subunit alpha, human

TSL 1 (best)

Gene ETFA, Length 917 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ETFA-215	ENST00000560595	LRRC9	Q6ZRR7	1453 aa		32.29	■■■□□ 2.76
ETFA-215	ENST00000560595	FRMPD1	Q5SYB0	1578 aa		32.28	■■■□□ 2.76
ETFA-215	ENST00000560595	RICTOR	Q6R327	1708 aa		32.26	■■■□□ 2.76
ETFA-215	ENST00000560595	EFCAB2	Q5VUJ9	269 aa		32.25	■■■□□ 2.75
ETFA-215	ENST00000560595	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.25	■■■□□ 2.75
ETFA-215	ENST00000560595	ADGRL1	O94910	1474 aa		32.24	■■■□□ 2.75
ETFA-215	ENST00000560595	ITSN2	Q9NZM3	1697 aa		32.21	■■■□□ 2.75
ETFA-215	ENST00000560595	DENND4B	O75064	1496 aa	Predicted RBP	32.21	■■■□□ 2.75
ETFA-215	ENST00000560595	NCOA2	Q15596	1464 aa		32.21	■■■□□ 2.75
ETFA-215	ENST00000560595	CCNB3	Q8WWL7	1395 aa		32.2	■■■□□ 2.75
ETFA-215	ENST00000560595	RAPGEF3	O95398	923 aa		32.19	■■■□□ 2.74
ETFA-215	ENST00000560595	KANK4	Q5T7N3	995 aa	Predicted RBP	32.19	■■■□□ 2.74
ETFA-215	ENST00000560595	SCAPER	Q9BY12	1400 aa		32.17	■■■□□ 2.74
ETFA-215	ENST00000560595	APLP2	Q06481	763 aa		32.16	■■■□□ 2.74
ETFA-215	ENST00000560595	ABCC1	P33527	1531 aa		32.16	■■■□□ 2.74
ETFA-215	ENST00000560595	SAMD9L	Q8IVG5	1584 aa		32.15	■■■□□ 2.74
ETFA-215	ENST00000560595	POGZ	Q7Z3K3	1410 aa		32.13	■■■□□ 2.73
ETFA-215	ENST00000560595	ZMYM4	Q5VZL5	1548 aa		32.1	■■■□□ 2.73
ETFA-215	ENST00000560595	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.08	■■■□□ 2.73
ETFA-215	ENST00000560595	ARHGEF12	Q9NZN5	1544 aa		32.07	■■■□□ 2.72
ETFA-215	ENST00000560595	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.06	■■■□□ 2.72
ETFA-215	ENST00000560595	SYCP2	Q9BX26	1530 aa		32.04	■■■□□ 2.72
ETFA-215	ENST00000560595	ZNF518A	Q6AHZ1	1483 aa		32.03	■■■□□ 2.72
ETFA-215	ENST00000560595	ARHGEF40	Q8TER5	1519 aa		32.03	■■■□□ 2.72
ETFA-215	ENST00000560595	KDM5C	P41229	1560 aa		32.02	■■■□□ 2.72
ETFA-215	ENST00000560595	PLEKHH2	Q8IVE3	1493 aa		32	■■■□□ 2.71
ETFA-215	ENST00000560595	TRAPPC8	Q9Y2L5	1435 aa		32	■■■□□ 2.71
ETFA-215	ENST00000560595	ZFYVE16	Q7Z3T8	1539 aa		31.98	■■■□□ 2.71
ETFA-215	ENST00000560595	MAGI2	Q86UL8	1455 aa		31.97	■■■□□ 2.71
ETFA-215	ENST00000560595	AFAP1	Q8N556	730 aa		31.96	■■■□□ 2.71
ETFA-215	ENST00000560595	KIAA1107	Q9UPP5	1409 aa		31.96	■■■□□ 2.71
ETFA-215	ENST00000560595	ZNF644	Q9H582	1327 aa	Predicted RBP	31.96	■■■□□ 2.71
ETFA-215	ENST00000560595	HECW2	Q9P2P5	1572 aa		31.95	■■■□□ 2.71
ETFA-215	ENST00000560595	MYOM3	Q5VTT5	1437 aa		31.94	■■■□□ 2.7
ETFA-215	ENST00000560595	CAMSAP2	Q08AD1	1489 aa		31.94	■■■□□ 2.7
ETFA-215	ENST00000560595	YEATS2	Q9ULM3	1422 aa		31.93	■■■□□ 2.7
ETFA-215	ENST00000560595	HNRNPM	P52272	730 aa	Known RBP eCLIP	31.91	■■■□□ 2.7
ETFA-215	ENST00000560595	KIDINS220	Q9ULH0	1771 aa		31.87	■■■□□ 2.69
ETFA-215	ENST00000560595	MBD5	Q9P267	1494 aa		31.87	■■■□□ 2.69
ETFA-215	ENST00000560595	MLH3	Q9UHC1	1453 aa		31.87	■■■□□ 2.69
ETFA-215	ENST00000560595	MIA2	Q96PC5	1412 aa		31.86	■■■□□ 2.69
ETFA-215	ENST00000560595	ABCA6	Q8N139	1617 aa		31.86	■■■□□ 2.69
ETFA-215	ENST00000560595	SIGLEC1	Q9BZZ2	1709 aa		31.85	■■■□□ 2.69
ETFA-215	ENST00000560595	DIP2C	Q9Y2E4	1556 aa		31.84	■■■□□ 2.69
ETFA-215	ENST00000560595	INO80	Q9ULG1	1556 aa	Predicted RBP	31.82	■■■□□ 2.68
ETFA-215	ENST00000560595	PTPN23	Q9H3S7	1636 aa		31.81	■■■□□ 2.68
ETFA-215	ENST00000560595	ARHGEF5	Q12774	1597 aa		31.81	■■■□□ 2.68
ETFA-215	ENST00000560595	ATP10A	O60312	1499 aa		31.79	■■■□□ 2.68
ETFA-215	ENST00000560595	MYT1L	Q9UL68	1186 aa		31.79	■■■□□ 2.68
ETFA-215	ENST00000560595	FGD6	Q6ZV73	1430 aa		31.78	■■■□□ 2.68
ETFA-215	ENST00000560595	ATP7A	Q04656	1500 aa		31.78	■■■□□ 2.68
ETFA-215	ENST00000560595	CCDC141	Q6ZP82	1450 aa		31.78	■■■□□ 2.68
ETFA-215	ENST00000560595	SPAG9	O60271	1321 aa	Known RBP	31.77	■■■□□ 2.68
ETFA-215	ENST00000560595	C9orf84	Q5VXU9	1444 aa		31.76	■■■□□ 2.68
ETFA-215	ENST00000560595	KDM4F	A0A1W2PPD8	638 aa		31.76	■■■□□ 2.67
ETFA-215	ENST00000560595	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.74	■■■□□ 2.67
ETFA-215	ENST00000560595	BCORL1	Q5H9F3	1711 aa		31.74	■■■□□ 2.67
ETFA-215	ENST00000560595	RERE	Q9P2R6	1566 aa		31.73	■■■□□ 2.67
ETFA-215	ENST00000560595	TCOF1	Q13428	1488 aa	Known RBP	31.72	■■■□□ 2.67
ETFA-215	ENST00000560595	ARID4B	Q4LE39	1312 aa	Predicted RBP	31.7	■■■□□ 2.66
ETFA-215	ENST00000560595	ADAMTSL3	P82987	1691 aa		31.68	■■■□□ 2.66
ETFA-215	ENST00000560595	RSPH4A	Q5TD94	716 aa		31.67	■■■□□ 2.66
ETFA-215	ENST00000560595	CROCC2	H7BZ55	1655 aa		31.67	■■■□□ 2.66
ETFA-215	ENST00000560595	ADGB	Q8N7X0	1667 aa		31.66	■■■□□ 2.66
ETFA-215	ENST00000560595	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.66	■■■□□ 2.66
ETFA-215	ENST00000560595	MAST1	Q9Y2H9	1570 aa		31.64	■■■□□ 2.65
ETFA-215	ENST00000560595	DNMT1	P26358	1616 aa	Known RBP	31.63	■■■□□ 2.65
ETFA-215	ENST00000560595	MADD	Q8WXG6	1647 aa		31.6	■■■□□ 2.65
ETFA-215	ENST00000560595	PLXNC1	O60486	1568 aa		31.6	■■■□□ 2.65
ETFA-215	ENST00000560595	AGL	P35573	1532 aa		31.59	■■■□□ 2.65
ETFA-215	ENST00000560595	A2M	P01023	1474 aa		31.58	■■■□□ 2.65
ETFA-215	ENST00000560595	ABCC5	O15440	1437 aa		31.58	■■■□□ 2.65
ETFA-215	ENST00000560595	TSPY4	P0CV99	314 aa		31.57	■■■□□ 2.64
ETFA-215	ENST00000560595	TSPY10	P0CW01	314 aa		31.57	■■■□□ 2.64
ETFA-215	ENST00000560595	DAPK1	P53355	1430 aa		31.56	■■■□□ 2.64
ETFA-215	ENST00000560595	FER1L4	A9Z1Z3	1794 aa		31.56	■■■□□ 2.64
ETFA-215	ENST00000560595	SHANK2	Q9UPX8	1470 aa		31.55	■■■□□ 2.64
ETFA-215	ENST00000560595	AEBP2	Q6ZN18	517 aa	Predicted RBP	31.54	■■■□□ 2.64
ETFA-215	ENST00000560595	MLEC	Q14165	292 aa		31.53	■■■□□ 2.64
ETFA-215	ENST00000560595	RIMS1	Q86UR5	1692 aa	Known RBP	31.53	■■■□□ 2.64
ETFA-215	ENST00000560595	FAM50A	Q14320	339 aa	Known RBP	31.52	■■■□□ 2.64
ETFA-215	ENST00000560595	DHX29	Q7Z478	1369 aa	Known RBP	31.45	■■■□□ 2.63
ETFA-215	ENST00000560595	PTPRM	P28827	1452 aa		31.43	■■■□□ 2.62
ETFA-215	ENST00000560595	RRBP1	Q9P2E9	1410 aa	Known RBP	31.4	■■■□□ 2.62
ETFA-215	ENST00000560595	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.38	■■■□□ 2.61	9e-9	■■□□□ 14.3
ETFA-215	ENST00000560595	DUOX2	Q9NRD8	1548 aa		31.38	■■■□□ 2.61
ETFA-215	ENST00000560595	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.36	■■■□□ 2.61
ETFA-215	ENST00000560595	ADGRL2	O95490	1459 aa		31.36	■■■□□ 2.61
ETFA-215	ENST00000560595	KIF15	Q9NS87	1388 aa		31.36	■■■□□ 2.61
ETFA-215	ENST00000560595	CHIC2	Q9UKJ5	165 aa		31.36	■■■□□ 2.61
ETFA-215	ENST00000560595	PTPRK	Q15262	1439 aa		31.35	■■■□□ 2.61
ETFA-215	ENST00000560595	ANKRD30A	Q9BXX3	1397 aa		31.32	■■■□□ 2.6
ETFA-215	ENST00000560595	NCOA1	Q15788	1441 aa		31.32	■■■□□ 2.6
ETFA-215	ENST00000560595	RRP7BP	Q9NSQ0	103 aa		31.31	■■■□□ 2.6
ETFA-215	ENST00000560595	CLTC	Q00610	1675 aa	Known RBP	31.31	■■■□□ 2.6
ETFA-215	ENST00000560595	RNF17	Q9BXT8	1623 aa	Known RBP	31.31	■■■□□ 2.6
ETFA-215	ENST00000560595	KIF3B	O15066	747 aa		31.3	■■■□□ 2.6
ETFA-215	ENST00000560595	GGT6	Q6P531	493 aa		31.29	■■■□□ 2.6
ETFA-215	ENST00000560595	MROH2A	A6NES4	1674 aa		31.29	■■■□□ 2.6
ETFA-215	ENST00000560595	C3	P01024	1663 aa		31.28	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms