RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 ARID4BQ4LE39 1312 aaPredicted RBP22.72■■□□□ 1.23
TPM1-223ENST00000560445 ARHGAP5Q13017 1502 aa22.72■■□□□ 1.23
TPM1-223ENST00000560445 SCAPERQ9BY12 1400 aa22.71■■□□□ 1.23
TPM1-223ENST00000560445 LRRIQ1Q96JM4 1722 aa22.71■■□□□ 1.23
TPM1-223ENST00000560445 BCORL1Q5H9F3 1711 aa22.68■■□□□ 1.22
TPM1-223ENST00000560445 ADAMTSL3P82987 1691 aa22.68■■□□□ 1.22
TPM1-223ENST00000560445 ZNF518AQ6AHZ1 1483 aa22.67■■□□□ 1.22
TPM1-223ENST00000560445 PREX2Q70Z35 1606 aa22.64■■□□□ 1.22
TPM1-223ENST00000560445 HECW2Q9P2P5 1572 aa22.61■■□□□ 1.21
TPM1-223ENST00000560445 PTPRMP28827 1452 aa22.6■■□□□ 1.21
TPM1-223ENST00000560445 CDC42BPBQ9Y5S2 1711 aa22.58■■□□□ 1.21
TPM1-223ENST00000560445 ATP10AO60312 1499 aa22.58■■□□□ 1.2
TPM1-223ENST00000560445 KDM5CP41229 1560 aa22.58■■□□□ 1.2
TPM1-223ENST00000560445 C9orf84Q5VXU9 1444 aa22.57■■□□□ 1.2
TPM1-223ENST00000560445 YEATS2Q9ULM3 1422 aa22.57■■□□□ 1.2
TPM1-223ENST00000560445 MADDQ8WXG6 1647 aa22.57■■□□□ 1.2
TPM1-223ENST00000560445 CEP162Q5TB80 1403 aa22.57■■□□□ 1.2
TPM1-223ENST00000560445 ABCC1P33527 1531 aa22.55■■□□□ 1.2
TPM1-223ENST00000560445 MTUS2Q5JR59 1369 aa22.54■■□□□ 1.2
TPM1-223ENST00000560445 CDC42BPAQ5VT25 1732 aa22.54■■□□□ 1.2
TPM1-223ENST00000560445 MYT1LQ9UL68 1186 aa22.53■■□□□ 1.2
TPM1-223ENST00000560445 PLEKHH2Q8IVE3 1493 aa22.51■■□□□ 1.19
TPM1-223ENST00000560445 MLH3Q9UHC1 1453 aa22.51■■□□□ 1.19
TPM1-223ENST00000560445 RIMS1Q86UR5 1692 aaKnown RBP22.51■■□□□ 1.19
TPM1-223ENST00000560445 ITSN2Q9NZM3 1697 aa22.5■■□□□ 1.19
TPM1-223ENST00000560445 EHBP1L1Q8N3D4 1523 aa22.49■■□□□ 1.19
TPM1-223ENST00000560445 REREQ9P2R6 1566 aa22.49■■□□□ 1.19
TPM1-223ENST00000560445 CCNB3Q8WWL7 1395 aa22.49■■□□□ 1.19
TPM1-223ENST00000560445 FER1L4A9Z1Z3 1794 aa22.48■■□□□ 1.19
TPM1-223ENST00000560445 AFAP1Q8N556 730 aa22.47■■□□□ 1.19
TPM1-223ENST00000560445 GPATCH8Q9UKJ3 1502 aaKnown RBP22.46■■□□□ 1.19
TPM1-223ENST00000560445 CFDP1Q9UEE9 299 aaPredicted RBP22.44■■□□□ 1.18
TPM1-223ENST00000560445 DIP2CQ9Y2E4 1556 aa22.44■■□□□ 1.18
TPM1-223ENST00000560445 ARHGEF12Q9NZN5 1544 aa22.43■■□□□ 1.18
TPM1-223ENST00000560445 KIAA1107Q9UPP5 1409 aa22.43■■□□□ 1.18
TPM1-223ENST00000560445 MLECQ14165 292 aa22.42■■□□□ 1.18
TPM1-223ENST00000560445 ZNF777Q9ULD5 760 aaPredicted RBP22.42■■□□□ 1.18
TPM1-223ENST00000560445 TRAPPC8Q9Y2L5 1435 aa22.41■■□□□ 1.18
TPM1-223ENST00000560445 SIGLEC1Q9BZZ2 1709 aa22.41■■□□□ 1.18
TPM1-223ENST00000560445 SAMD9LQ8IVG5 1584 aa22.41■■□□□ 1.18
TPM1-223ENST00000560445 ABCA6Q8N139 1617 aa22.4■■□□□ 1.18
TPM1-223ENST00000560445 AGLP35573 1532 aa22.4■■□□□ 1.18
TPM1-223ENST00000560445 SYCP2Q9BX26 1530 aa22.4■■□□□ 1.18
TPM1-223ENST00000560445 ESF1Q9H501 851 aaKnown RBP22.37■■□□□ 1.17
TPM1-223ENST00000560445 SPAG9O60271 1321 aaKnown RBP22.36■■□□□ 1.17
TPM1-223ENST00000560445 SUPT6HQ7KZ85 1726 aaKnown RBP22.36■■□□□ 1.17
TPM1-223ENST00000560445 KIDINS220Q9ULH0 1771 aa22.35■■□□□ 1.17
TPM1-223ENST00000560445 TIAM1Q13009 1591 aa22.35■■□□□ 1.17
TPM1-223ENST00000560445 VPS8Q8N3P4 1428 aa22.35■■□□□ 1.17
TPM1-223ENST00000560445 LMTK3Q96Q04 1460 aa22.34■■□□□ 1.17
TPM1-223ENST00000560445 CNTLNQ9NXG0 1405 aa22.31■■□□□ 1.16
TPM1-223ENST00000560445 ATP7AQ04656 1500 aa22.31■■□□□ 1.16
TPM1-223ENST00000560445 INO80Q9ULG1 1556 aaPredicted RBP22.29■■□□□ 1.16
TPM1-223ENST00000560445 HNRNPMP52272 730 aaKnown RBP eCLIP22.29■■□□□ 1.16
TPM1-223ENST00000560445 PLPPR3Q6T4P5 718 aa22.29■■□□□ 1.16
TPM1-223ENST00000560445 PREX1Q8TCU6 1659 aa22.28■■□□□ 1.16
TPM1-223ENST00000560445 NCOA2Q15596 1464 aa22.28■■□□□ 1.16
TPM1-223ENST00000560445 MAP3K1Q13233 1512 aa22.27■■□□□ 1.16
TPM1-223ENST00000560445 RSPH4AQ5TD94 716 aa22.26■■□□□ 1.15
TPM1-223ENST00000560445 ADGBQ8N7X0 1667 aa22.25■■□□□ 1.15
TPM1-223ENST00000560445 SETD1BQ9UPS6 1966 aaKnown RBP22.25■■□□□ 1.15
TPM1-223ENST00000560445 RTEL1-TNFRSF6BF6WH68 1400 aa22.23■■□□□ 1.15
TPM1-223ENST00000560445 A2MP01023 1474 aa22.23■■□□□ 1.15
TPM1-223ENST00000560445 LOC105371045A0A1W2PR82 267 aa22.23■■□□□ 1.15
TPM1-223ENST00000560445 UHRF1BP1Q6BDS2 1440 aa22.23■■□□□ 1.15
TPM1-223ENST00000560445 LRRC9Q6ZRR7 1453 aa22.22■■□□□ 1.15
TPM1-223ENST00000560445 PLXNC1O60486 1568 aa22.21■■□□□ 1.15
TPM1-223ENST00000560445 MROH2AA6NES4 1674 aa22.21■■□□□ 1.15
TPM1-223ENST00000560445 CCDC141Q6ZP82 1450 aa22.21■■□□□ 1.15
TPM1-223ENST00000560445 MBD5Q9P267 1494 aa22.2■■□□□ 1.14
TPM1-223ENST00000560445 APLP2Q06481 763 aa22.19■■□□□ 1.14
TPM1-223ENST00000560445 PPP6R1Q9UPN7 881 aa22.19■■□□□ 1.14
TPM1-223ENST00000560445 CAMSAP2Q08AD1 1489 aa22.19■■□□□ 1.14
TPM1-223ENST00000560445 C3P01024 1663 aa22.19■■□□□ 1.14
TPM1-223ENST00000560445 ARHGEF5Q12774 1597 aa22.16■■□□□ 1.14
TPM1-223ENST00000560445 NPATQ14207 1427 aa22.15■■□□□ 1.14
TPM1-223ENST00000560445 ZNF644Q9H582 1327 aaPredicted RBP22.15■■□□□ 1.14
TPM1-223ENST00000560445 CEBPAP49715 358 aaPredicted RBP22.15■■□□□ 1.14
TPM1-223ENST00000560445 HSPA2P54652 639 aa22.14■■□□□ 1.13
TPM1-223ENST00000560445 DMRT2Q9Y5R5 561 aa22.13■■□□□ 1.13
TPM1-223ENST00000560445 FAM135AQ9P2D6 1515 aa22.12■■□□□ 1.13
TPM1-223ENST00000560445 TSPY4P0CV99 314 aa22.12■■□□□ 1.13
TPM1-223ENST00000560445 TSPY10P0CW01 314 aa22.12■■□□□ 1.13
TPM1-223ENST00000560445 MIA2Q96PC5 1412 aa22.12■■□□□ 1.13
TPM1-223ENST00000560445 ILDR1Q86SU0 546 aaPredicted RBP22.11■■□□□ 1.13
TPM1-223ENST00000560445 DHX29Q7Z478 1369 aaKnown RBP22.1■■□□□ 1.13
TPM1-223ENST00000560445 MYOM3Q5VTT5 1437 aa22.09■■□□□ 1.13
TPM1-223ENST00000560445 ZMYM3Q14202 1370 aa22.08■■□□□ 1.12
TPM1-223ENST00000560445 CLTCQ00610 1675 aaKnown RBP22.07■■□□□ 1.12
TPM1-223ENST00000560445 GGT6Q6P531 493 aa22.07■■□□□ 1.12
TPM1-223ENST00000560445 FBXO41Q8TF61 875 aa22.04■■□□□ 1.12
TPM1-223ENST00000560445 MAST1Q9Y2H9 1570 aa22.04■■□□□ 1.12
TPM1-223ENST00000560445 KDM5DQ9BY66 1539 aa22.01■■□□□ 1.11
TPM1-223ENST00000560445 KANK4Q5T7N3 995 aaPredicted RBP22■■□□□ 1.11
TPM1-223ENST00000560445 KIF3BO15066 747 aa21.99■■□□□ 1.11
TPM1-223ENST00000560445 ZNF142P52746 1687 aaPredicted RBP21.97■■□□□ 1.11
TPM1-223ENST00000560445 PTPRTO14522 1441 aa21.97■■□□□ 1.11
TPM1-223ENST00000560445 PTPRKQ15262 1439 aa21.97■■□□□ 1.11
TPM1-223ENST00000560445 MYO3AQ8NEV4 1616 aa21.96■■□□□ 1.11
TPM1-223ENST00000560445 EIF2AK4Q9P2K8 1649 aaKnown RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms