RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 CCDC18Q5T9S5 1454 aa22.26■■□□□ 1.15
SMAD3-214ENST00000560402 RIMS1Q86UR5 1692 aaKnown RBP22.26■■□□□ 1.15
SMAD3-214ENST00000560402 ARID4BQ4LE39 1312 aaPredicted RBP22.26■■□□□ 1.15
SMAD3-214ENST00000560402 PCF11O94913 1555 aaKnown RBP22.25■■□□□ 1.15
SMAD3-214ENST00000560402 SCAPERQ9BY12 1400 aa22.23■■□□□ 1.15
SMAD3-214ENST00000560402 ATP1B4Q9UN42 357 aaPredicted RBP22.23■■□□□ 1.15
SMAD3-214ENST00000560402 SIGLEC1Q9BZZ2 1709 aa22.22■■□□□ 1.15
SMAD3-214ENST00000560402 YEATS2Q9ULM3 1422 aa22.22■■□□□ 1.15
SMAD3-214ENST00000560402 CASKIN1Q8WXD9 1431 aa22.21■■□□□ 1.15
SMAD3-214ENST00000560402 ARHGAP5Q13017 1502 aa22.2■■□□□ 1.14
SMAD3-214ENST00000560402 EFCAB2Q5VUJ9 269 aa22.19■■□□□ 1.14
SMAD3-214ENST00000560402 ZNF518AQ6AHZ1 1483 aa22.19■■□□□ 1.14
SMAD3-214ENST00000560402 KDM5CP41229 1560 aa22.19■■□□□ 1.14
SMAD3-214ENST00000560402 PREX2Q70Z35 1606 aa22.19■■□□□ 1.14
SMAD3-214ENST00000560402 FER1L4A9Z1Z3 1794 aa22.19■■□□□ 1.14
SMAD3-214ENST00000560402 FYCO1Q9BQS8 1478 aa22.18■■□□□ 1.14
SMAD3-214ENST00000560402 CDC42BPBQ9Y5S2 1711 aa22.17■■□□□ 1.14
SMAD3-214ENST00000560402 C9orf84Q5VXU9 1444 aa22.16■■□□□ 1.14
SMAD3-214ENST00000560402 ATP10AO60312 1499 aa22.14■■□□□ 1.13
SMAD3-214ENST00000560402 LMTK3Q96Q04 1460 aa22.14■■□□□ 1.13
SMAD3-214ENST00000560402 ARHGEF12Q9NZN5 1544 aa22.11■■□□□ 1.13
SMAD3-214ENST00000560402 ILDR1Q86SU0 546 aaPredicted RBP22.11■■□□□ 1.13
SMAD3-214ENST00000560402 REREQ9P2R6 1566 aa22.11■■□□□ 1.13
SMAD3-214ENST00000560402 ABCC1P33527 1531 aa22.11■■□□□ 1.13
SMAD3-214ENST00000560402 ITSN2Q9NZM3 1697 aa22.11■■□□□ 1.13
SMAD3-214ENST00000560402 CDC42BPAQ5VT25 1732 aa22.1■■□□□ 1.13
SMAD3-214ENST00000560402 DIP2CQ9Y2E4 1556 aa22.08■■□□□ 1.12
SMAD3-214ENST00000560402 MLH3Q9UHC1 1453 aa22.05■■□□□ 1.12
SMAD3-214ENST00000560402 ABCA6Q8N139 1617 aa22.05■■□□□ 1.12
SMAD3-214ENST00000560402 PREX1Q8TCU6 1659 aa22.01■■□□□ 1.11
SMAD3-214ENST00000560402 MLECQ14165 292 aa21.99■■□□□ 1.11
SMAD3-214ENST00000560402 AGLP35573 1532 aa21.99■■□□□ 1.11
SMAD3-214ENST00000560402 KIDINS220Q9ULH0 1771 aa21.98■■□□□ 1.11
SMAD3-214ENST00000560402 AFAP1Q8N556 730 aa21.98■■□□□ 1.11
SMAD3-214ENST00000560402 TRAPPC8Q9Y2L5 1435 aa21.97■■□□□ 1.11
SMAD3-214ENST00000560402 SAMD9LQ8IVG5 1584 aa21.96■■□□□ 1.11
SMAD3-214ENST00000560402 SYCP2Q9BX26 1530 aa21.93■■□□□ 1.1
SMAD3-214ENST00000560402 GPATCH8Q9UKJ3 1502 aaKnown RBP21.93■■□□□ 1.1
SMAD3-214ENST00000560402 MYT1LQ9UL68 1186 aa21.93■■□□□ 1.1
SMAD3-214ENST00000560402 PLEKHH2Q8IVE3 1493 aa21.92■■□□□ 1.1
SMAD3-214ENST00000560402 EHBP1L1Q8N3D4 1523 aa21.9■■□□□ 1.1
SMAD3-214ENST00000560402 SETD1BQ9UPS6 1966 aaKnown RBP21.9■■□□□ 1.1
SMAD3-214ENST00000560402 C3P01024 1663 aa21.9■■□□□ 1.1
SMAD3-214ENST00000560402 PLPPR3Q6T4P5 718 aa21.89■■□□□ 1.09
SMAD3-214ENST00000560402 MTUS2Q5JR59 1369 aa21.88■■□□□ 1.09
SMAD3-214ENST00000560402 FBXO41Q8TF61 875 aa21.88■■□□□ 1.09
SMAD3-214ENST00000560402 KIAA1107Q9UPP5 1409 aa21.88■■□□□ 1.09
SMAD3-214ENST00000560402 INO80Q9ULG1 1556 aaPredicted RBP21.87■■□□□ 1.09
SMAD3-214ENST00000560402 ATP7AQ04656 1500 aa21.86■■□□□ 1.09
SMAD3-214ENST00000560402 MROH2AA6NES4 1674 aa21.86■■□□□ 1.09
SMAD3-214ENST00000560402 HSPA2P54652 639 aa21.86■■□□□ 1.09
SMAD3-214ENST00000560402 UHRF1BP1Q6BDS2 1440 aa21.86■■□□□ 1.09
SMAD3-214ENST00000560402 CNTLNQ9NXG0 1405 aa21.86■■□□□ 1.09
SMAD3-214ENST00000560402 CCNB3Q8WWL7 1395 aa21.86■■□□□ 1.09
SMAD3-214ENST00000560402 TIAM1Q13009 1591 aa21.85■■□□□ 1.09
SMAD3-214ENST00000560402 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
SMAD3-214ENST00000560402 PLXNC1O60486 1568 aa21.83■■□□□ 1.09
SMAD3-214ENST00000560402 ZNF777Q9ULD5 760 aaPredicted RBP21.81■■□□□ 1.08
SMAD3-214ENST00000560402 SPAG9O60271 1321 aaKnown RBP21.8■■□□□ 1.08
SMAD3-214ENST00000560402 ADGBQ8N7X0 1667 aa21.8■■□□□ 1.08
SMAD3-214ENST00000560402 ESF1Q9H501 851 aaKnown RBP21.8■■□□□ 1.08
SMAD3-214ENST00000560402 CFDP1Q9UEE9 299 aaPredicted RBP21.8■■□□□ 1.08
SMAD3-214ENST00000560402 SUPT6HQ7KZ85 1726 aaKnown RBP21.8■■□□□ 1.08
SMAD3-214ENST00000560402 CEBPAP49715 358 aaPredicted RBP21.78■■□□□ 1.08
SMAD3-214ENST00000560402 STRCQ7RTU9 1775 aa21.77■■□□□ 1.08
SMAD3-214ENST00000560402 A2MP01023 1474 aa21.75■■□□□ 1.07
SMAD3-214ENST00000560402 HNRNPMP52272 730 aaKnown RBP eCLIP21.74■■□□□ 1.071e-6■□□□□ 10.7
SMAD3-214ENST00000560402 NPATQ14207 1427 aa21.73■■□□□ 1.07
SMAD3-214ENST00000560402 CLTCQ00610 1675 aaKnown RBP21.71■■□□□ 1.07
SMAD3-214ENST00000560402 DMRT2Q9Y5R5 561 aa21.7■■□□□ 1.06
SMAD3-214ENST00000560402 RTEL1-TNFRSF6BF6WH68 1400 aa21.7■■□□□ 1.06
SMAD3-214ENST00000560402 MBD5Q9P267 1494 aa21.7■■□□□ 1.06
SMAD3-214ENST00000560402 ZNF142P52746 1687 aaPredicted RBP21.69■■□□□ 1.06
SMAD3-214ENST00000560402 NCOA2Q15596 1464 aa21.68■■□□□ 1.06
SMAD3-214ENST00000560402 CCDC141Q6ZP82 1450 aa21.66■■□□□ 1.06
SMAD3-214ENST00000560402 PTPRTO14522 1441 aa21.66■■□□□ 1.06
SMAD3-214ENST00000560402 MYO3AQ8NEV4 1616 aa21.66■■□□□ 1.06
SMAD3-214ENST00000560402 FAM135AQ9P2D6 1515 aa21.65■■□□□ 1.06
SMAD3-214ENST00000560402 CAMSAP2Q08AD1 1489 aa21.65■■□□□ 1.06
SMAD3-214ENST00000560402 VPS8Q8N3P4 1428 aa21.64■■□□□ 1.06
SMAD3-214ENST00000560402 ZMYM3Q14202 1370 aa21.64■■□□□ 1.06
SMAD3-214ENST00000560402 CERKQ8TCT0 537 aa21.64■■□□□ 1.05
SMAD3-214ENST00000560402 NCOA1Q15788 1441 aa21.63■■□□□ 1.05
SMAD3-214ENST00000560402 ARHGEF5Q12774 1597 aa21.63■■□□□ 1.05
SMAD3-214ENST00000560402 PPP6R1Q9UPN7 881 aa21.62■■□□□ 1.05
SMAD3-214ENST00000560402 ZNF644Q9H582 1327 aaPredicted RBP21.61■■□□□ 1.05
SMAD3-214ENST00000560402 CAMSAP1Q5T5Y3 1602 aa21.6■■□□□ 1.05
SMAD3-214ENST00000560402 MAP3K1Q13233 1512 aa21.6■■□□□ 1.05
SMAD3-214ENST00000560402 CEP170BQ9Y4F5 1589 aaPredicted RBP21.59■■□□□ 1.05
SMAD3-214ENST00000560402 PTPRKQ15262 1439 aa21.58■■□□□ 1.05
SMAD3-214ENST00000560402 RSPH4AQ5TD94 716 aa21.58■■□□□ 1.05
SMAD3-214ENST00000560402 DHX29Q7Z478 1369 aaKnown RBP21.58■■□□□ 1.04
SMAD3-214ENST00000560402 LRRC9Q6ZRR7 1453 aa21.58■■□□□ 1.04
SMAD3-214ENST00000560402 PLA2R1Q13018 1463 aa21.57■■□□□ 1.04
SMAD3-214ENST00000560402 KDM5DQ9BY66 1539 aa21.56■■□□□ 1.04
SMAD3-214ENST00000560402 GGT6Q6P531 493 aa21.55■■□□□ 1.04
SMAD3-214ENST00000560402 MAST1Q9Y2H9 1570 aa21.53■■□□□ 1.04
SMAD3-214ENST00000560402 IQSEC2Q5JU85 1478 aa21.53■■□□□ 1.04
SMAD3-214ENST00000560402 LTBP4Q8N2S1 1624 aa21.51■■□□□ 1.03
SMAD3-214ENST00000560402 EIF2AK4Q9P2K8 1649 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms