RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 PREX2Q70Z35 1606 aa21.15■□□□□ 0.98
SMAD3-213ENST00000560175 SCAPERQ9BY12 1400 aa21.14■□□□□ 0.98
SMAD3-213ENST00000560175 CDC42BPAQ5VT25 1732 aa21.14■□□□□ 0.97
SMAD3-213ENST00000560175 MAGI2Q86UL8 1455 aa21.12■□□□□ 0.97
SMAD3-213ENST00000560175 POGZQ7Z3K3 1410 aa21.12■□□□□ 0.97
SMAD3-213ENST00000560175 VPS8Q8N3P4 1428 aa21.12■□□□□ 0.97
SMAD3-213ENST00000560175 ARHGAP5Q13017 1502 aa21.11■□□□□ 0.97
SMAD3-213ENST00000560175 GPATCH8Q9UKJ3 1502 aaKnown RBP21.09■□□□□ 0.97
SMAD3-213ENST00000560175 MTUS2Q5JR59 1369 aa21.08■□□□□ 0.96
SMAD3-213ENST00000560175 ARHGEF40Q8TER5 1519 aa21.07■□□□□ 0.96
SMAD3-213ENST00000560175 EHBP1L1Q8N3D4 1523 aa21.06■□□□□ 0.96
SMAD3-213ENST00000560175 ZNF518AQ6AHZ1 1483 aa21.05■□□□□ 0.96
SMAD3-213ENST00000560175 KDM5CP41229 1560 aa21.05■□□□□ 0.96
SMAD3-213ENST00000560175 MAP3K1Q13233 1512 aa21.04■□□□□ 0.96
SMAD3-213ENST00000560175 ABCC1P33527 1531 aa21.04■□□□□ 0.96
SMAD3-213ENST00000560175 ARHGEF12Q9NZN5 1544 aa21.04■□□□□ 0.96
SMAD3-213ENST00000560175 TIAM1Q13009 1591 aa21.03■□□□□ 0.96
SMAD3-213ENST00000560175 YEATS2Q9ULM3 1422 aa21.03■□□□□ 0.96
SMAD3-213ENST00000560175 AFAP1Q8N556 730 aa21.02■□□□□ 0.96
SMAD3-213ENST00000560175 ZFYVE16Q7Z3T8 1539 aa21.02■□□□□ 0.96
SMAD3-213ENST00000560175 ADAMTSL3P82987 1691 aa21■□□□□ 0.95
SMAD3-213ENST00000560175 ITSN2Q9NZM3 1697 aa21■□□□□ 0.95
SMAD3-213ENST00000560175 SAMD9LQ8IVG5 1584 aa21■□□□□ 0.95
SMAD3-213ENST00000560175 CCNB3Q8WWL7 1395 aa20.99■□□□□ 0.95
SMAD3-213ENST00000560175 TRAPPC8Q9Y2L5 1435 aa20.99■□□□□ 0.95
SMAD3-213ENST00000560175 MLH3Q9UHC1 1453 aa20.99■□□□□ 0.95
SMAD3-213ENST00000560175 BCORL1Q5H9F3 1711 aa20.98■□□□□ 0.95
SMAD3-213ENST00000560175 KIAA1107Q9UPP5 1409 aa20.98■□□□□ 0.95
SMAD3-213ENST00000560175 ATP10AO60312 1499 aa20.97■□□□□ 0.95
SMAD3-213ENST00000560175 CFDP1Q9UEE9 299 aaPredicted RBP20.97■□□□□ 0.95
SMAD3-213ENST00000560175 SIGLEC1Q9BZZ2 1709 aa20.97■□□□□ 0.95
SMAD3-213ENST00000560175 LRRC9Q6ZRR7 1453 aa20.96■□□□□ 0.95
SMAD3-213ENST00000560175 SUPT6HQ7KZ85 1726 aaKnown RBP20.95■□□□□ 0.94
SMAD3-213ENST00000560175 NCOA2Q15596 1464 aa20.94■□□□□ 0.94
SMAD3-213ENST00000560175 PLEKHH2Q8IVE3 1493 aa20.94■□□□□ 0.94
SMAD3-213ENST00000560175 HECW2Q9P2P5 1572 aa20.94■□□□□ 0.94
SMAD3-213ENST00000560175 REREQ9P2R6 1566 aa20.92■□□□□ 0.94
SMAD3-213ENST00000560175 C9orf84Q5VXU9 1444 aa20.91■□□□□ 0.94
SMAD3-213ENST00000560175 ZNF777Q9ULD5 760 aaPredicted RBP20.91■□□□□ 0.94
SMAD3-213ENST00000560175 KIDINS220Q9ULH0 1771 aa20.91■□□□□ 0.94
SMAD3-213ENST00000560175 SYCP2Q9BX26 1530 aa20.9■□□□□ 0.94
SMAD3-213ENST00000560175 HNRNPMP52272 730 aaKnown RBP eCLIP20.9■□□□□ 0.941e-6■■■■□ 22.5
SMAD3-213ENST00000560175 KANK4Q5T7N3 995 aaPredicted RBP20.9■□□□□ 0.94
SMAD3-213ENST00000560175 DIP2CQ9Y2E4 1556 aa20.89■□□□□ 0.94
SMAD3-213ENST00000560175 ARID4BQ4LE39 1312 aaPredicted RBP20.89■□□□□ 0.93
SMAD3-213ENST00000560175 MBD5Q9P267 1494 aa20.88■□□□□ 0.93
SMAD3-213ENST00000560175 ZNF644Q9H582 1327 aaPredicted RBP20.87■□□□□ 0.93
SMAD3-213ENST00000560175 ABCA6Q8N139 1617 aa20.87■□□□□ 0.93
SMAD3-213ENST00000560175 PTPRMP28827 1452 aa20.86■□□□□ 0.93
SMAD3-213ENST00000560175 MADDQ8WXG6 1647 aa20.86■□□□□ 0.93
SMAD3-213ENST00000560175 AGLP35573 1532 aa20.83■□□□□ 0.93
SMAD3-213ENST00000560175 SPAG9O60271 1321 aaKnown RBP20.82■□□□□ 0.92
SMAD3-213ENST00000560175 INO80Q9ULG1 1556 aaPredicted RBP20.81■□□□□ 0.92
SMAD3-213ENST00000560175 RSPH4AQ5TD94 716 aa20.81■□□□□ 0.92
SMAD3-213ENST00000560175 RTEL1-TNFRSF6BF6WH68 1400 aa20.79■□□□□ 0.92
SMAD3-213ENST00000560175 ATP7AQ04656 1500 aa20.79■□□□□ 0.92
SMAD3-213ENST00000560175 MYT1LQ9UL68 1186 aa20.79■□□□□ 0.92
SMAD3-213ENST00000560175 CAMSAP2Q08AD1 1489 aa20.79■□□□□ 0.92
SMAD3-213ENST00000560175 MIA2Q96PC5 1412 aa20.78■□□□□ 0.92
SMAD3-213ENST00000560175 RIMS1Q86UR5 1692 aaKnown RBP20.78■□□□□ 0.92
SMAD3-213ENST00000560175 APLP2Q06481 763 aa20.77■□□□□ 0.92
SMAD3-213ENST00000560175 MYOM3Q5VTT5 1437 aa20.77■□□□□ 0.91
SMAD3-213ENST00000560175 ARHGEF5Q12774 1597 aa20.76■□□□□ 0.91
SMAD3-213ENST00000560175 FER1L4A9Z1Z3 1794 aa20.76■□□□□ 0.91
SMAD3-213ENST00000560175 PLXNC1O60486 1568 aa20.74■□□□□ 0.91
SMAD3-213ENST00000560175 MLECQ14165 292 aa20.74■□□□□ 0.91
SMAD3-213ENST00000560175 CCDC141Q6ZP82 1450 aa20.74■□□□□ 0.91
SMAD3-213ENST00000560175 ADGBQ8N7X0 1667 aa20.72■□□□□ 0.91
SMAD3-213ENST00000560175 A2MP01023 1474 aa20.71■□□□□ 0.91
SMAD3-213ENST00000560175 DHX29Q7Z478 1369 aaKnown RBP20.67■□□□□ 0.9
SMAD3-213ENST00000560175 MAST1Q9Y2H9 1570 aa20.66■□□□□ 0.9
SMAD3-213ENST00000560175 SETD1BQ9UPS6 1966 aaKnown RBP20.65■□□□□ 0.9
SMAD3-213ENST00000560175 TSPY4P0CV99 314 aa20.64■□□□□ 0.89
SMAD3-213ENST00000560175 TSPY10P0CW01 314 aa20.64■□□□□ 0.89
SMAD3-213ENST00000560175 TCOF1Q13428 1488 aaKnown RBP20.63■□□□□ 0.89
SMAD3-213ENST00000560175 PPP6R1Q9UPN7 881 aa20.63■□□□□ 0.89
SMAD3-213ENST00000560175 FGD6Q6ZV73 1430 aa20.62■□□□□ 0.89
SMAD3-213ENST00000560175 CNTLNQ9NXG0 1405 aa20.62■□□□□ 0.89
SMAD3-213ENST00000560175 PTPN23Q9H3S7 1636 aa20.62■□□□□ 0.89
SMAD3-213ENST00000560175 LMTK3Q96Q04 1460 aa20.62■□□□□ 0.89
SMAD3-213ENST00000560175 MROH2AA6NES4 1674 aa20.6■□□□□ 0.89
SMAD3-213ENST00000560175 C3P01024 1663 aa20.6■□□□□ 0.89
SMAD3-213ENST00000560175 CEBPAP49715 358 aaPredicted RBP20.59■□□□□ 0.89
SMAD3-213ENST00000560175 ABCC5O15440 1437 aa20.58■□□□□ 0.88
SMAD3-213ENST00000560175 SHANK2Q9UPX8 1470 aa20.56■□□□□ 0.88
SMAD3-213ENST00000560175 ESF1Q9H501 851 aaKnown RBP20.55■□□□□ 0.88
SMAD3-213ENST00000560175 DNMT1P26358 1616 aaKnown RBP20.55■□□□□ 0.88
SMAD3-213ENST00000560175 ZMYM3Q14202 1370 aa20.55■□□□□ 0.88
SMAD3-213ENST00000560175 CROCC2H7BZ55 1655 aa20.54■□□□□ 0.88
SMAD3-213ENST00000560175 PREX1Q8TCU6 1659 aa20.54■□□□□ 0.88
SMAD3-213ENST00000560175 GGT6Q6P531 493 aa20.53■□□□□ 0.88
SMAD3-213ENST00000560175 DAPK1P53355 1430 aa20.53■□□□□ 0.88
SMAD3-213ENST00000560175 CLTCQ00610 1675 aaKnown RBP20.52■□□□□ 0.88
SMAD3-213ENST00000560175 KIF3BO15066 747 aa20.52■□□□□ 0.88
SMAD3-213ENST00000560175 FAM135AQ9P2D6 1515 aa20.52■□□□□ 0.87
SMAD3-213ENST00000560175 NPATQ14207 1427 aa20.51■□□□□ 0.87
SMAD3-213ENST00000560175 PLPPR3Q6T4P5 718 aa20.5■□□□□ 0.87
SMAD3-213ENST00000560175 EIF2AK4Q9P2K8 1649 aaKnown RBP20.49■□□□□ 0.87
SMAD3-213ENST00000560175 DUOX2Q9NRD8 1548 aa20.48■□□□□ 0.87
SMAD3-213ENST00000560175 RNF17Q9BXT8 1623 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms