RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 FANCAO15360 1455 aa13.39□□□□□ -0.27
USP3-217ENST00000560070 HNRNPMP52272 730 aaKnown RBP eCLIP13.38□□□□□ -0.278e-7■■■■■ 27.1
USP3-217ENST00000560070 ABCA9Q8IUA7 1624 aa13.38□□□□□ -0.27
USP3-217ENST00000560070 SCAPERQ9BY12 1400 aa13.38□□□□□ -0.27
USP3-217ENST00000560070 PPRC1Q5VV67 1664 aaKnown RBP13.37□□□□□ -0.27
USP3-217ENST00000560070 ZNF644Q9H582 1327 aaPredicted RBP13.37□□□□□ -0.27
USP3-217ENST00000560070 TTC37Q6PGP7 1564 aa13.36□□□□□ -0.27
USP3-217ENST00000560070 NEO1Q92859 1461 aa13.36□□□□□ -0.27
USP3-217ENST00000560070 CFAP43Q8NDM7 1665 aa13.35□□□□□ -0.27
USP3-217ENST00000560070 KIF14Q15058 1648 aa13.35□□□□□ -0.27
USP3-217ENST00000560070 DENND4BO75064 1496 aaPredicted RBP13.34□□□□□ -0.27
USP3-217ENST00000560070 ARID4BQ4LE39 1312 aaPredicted RBP13.34□□□□□ -0.27
USP3-217ENST00000560070 ARHGAP5Q13017 1502 aa13.33□□□□□ -0.28
USP3-217ENST00000560070 ARAP3Q8WWN8 1544 aa13.33□□□□□ -0.28
USP3-217ENST00000560070 ADGRL1O94910 1474 aa13.32□□□□□ -0.28
USP3-217ENST00000560070 LRRIQ1Q96JM4 1722 aa13.32□□□□□ -0.28
USP3-217ENST00000560070 GPATCH8Q9UKJ3 1502 aaKnown RBP13.32□□□□□ -0.28
USP3-217ENST00000560070 KDM4FA0A1W2PPD8 638 aa13.31□□□□□ -0.28
USP3-217ENST00000560070 LRRC9Q6ZRR7 1453 aa13.3□□□□□ -0.28
USP3-217ENST00000560070 MLECQ14165 292 aa13.29□□□□□ -0.28
USP3-217ENST00000560070 TRAPPC8Q9Y2L5 1435 aa13.28□□□□□ -0.28
USP3-217ENST00000560070 NCOA2Q15596 1464 aa13.28□□□□□ -0.28
USP3-217ENST00000560070 TIAM1Q13009 1591 aa13.28□□□□□ -0.28
USP3-217ENST00000560070 EHBP1L1Q8N3D4 1523 aa13.26□□□□□ -0.29
USP3-217ENST00000560070 ARHGEF12Q9NZN5 1544 aa13.25□□□□□ -0.29
USP3-217ENST00000560070 YEATS2Q9ULM3 1422 aa13.25□□□□□ -0.29
USP3-217ENST00000560070 SPAG9O60271 1321 aaKnown RBP13.25□□□□□ -0.29
USP3-217ENST00000560070 POGZQ7Z3K3 1410 aa13.24□□□□□ -0.29
USP3-217ENST00000560070 PLPPR3Q6T4P5 718 aa13.24□□□□□ -0.29
USP3-217ENST00000560070 TSPY4P0CV99 314 aa13.22□□□□□ -0.29
USP3-217ENST00000560070 TSPY10P0CW01 314 aa13.22□□□□□ -0.29
USP3-217ENST00000560070 FAM50AQ14320 339 aaKnown RBP13.22□□□□□ -0.29
USP3-217ENST00000560070 MAP3K1Q13233 1512 aa13.22□□□□□ -0.29
USP3-217ENST00000560070 ZNF518AQ6AHZ1 1483 aa13.19□□□□□ -0.3
USP3-217ENST00000560070 CFAP74Q9C0B2 1584 aa13.19□□□□□ -0.3
USP3-217ENST00000560070 RSPH4AQ5TD94 716 aa13.18□□□□□ -0.3
USP3-217ENST00000560070 CHIC2Q9UKJ5 165 aa13.18□□□□□ -0.3
USP3-217ENST00000560070 KIAA1107Q9UPP5 1409 aa13.18□□□□□ -0.3
USP3-217ENST00000560070 FRMPD1Q5SYB0 1578 aa13.18□□□□□ -0.3
USP3-217ENST00000560070 MYO5CQ9NQX4 1742 aa13.18□□□□□ -0.3
USP3-217ENST00000560070 MYOM3Q5VTT5 1437 aa13.17□□□□□ -0.3
USP3-217ENST00000560070 ATP10AO60312 1499 aa13.16□□□□□ -0.3
USP3-217ENST00000560070 PLEKHH2Q8IVE3 1493 aa13.16□□□□□ -0.3
USP3-217ENST00000560070 ITGAEP38570 1179 aa13.16□□□□□ -0.3
USP3-217ENST00000560070 SYCP2Q9BX26 1530 aa13.16□□□□□ -0.3
USP3-217ENST00000560070 PREX2Q70Z35 1606 aa13.16□□□□□ -0.3
USP3-217ENST00000560070 MAGI2Q86UL8 1455 aa13.16□□□□□ -0.3
USP3-217ENST00000560070 SAMD9LQ8IVG5 1584 aa13.15□□□□□ -0.3
USP3-217ENST00000560070 ABCC1P33527 1531 aa13.15□□□□□ -0.3
USP3-217ENST00000560070 ZFYVE16Q7Z3T8 1539 aa13.15□□□□□ -0.3
USP3-217ENST00000560070 GGT6Q6P531 493 aa13.15□□□□□ -0.3
USP3-217ENST00000560070 SUPT6HQ7KZ85 1726 aaKnown RBP13.15□□□□□ -0.3
USP3-217ENST00000560070 CDC42BPBQ9Y5S2 1711 aa13.15□□□□□ -0.3
USP3-217ENST00000560070 MBD5Q9P267 1494 aa13.15□□□□□ -0.3
USP3-217ENST00000560070 RRP7BPQ9NSQ0 103 aa13.14□□□□□ -0.31
USP3-217ENST00000560070 CAMSAP2Q08AD1 1489 aa13.14□□□□□ -0.31
USP3-217ENST00000560070 MLH3Q9UHC1 1453 aa13.13□□□□□ -0.31
USP3-217ENST00000560070 MIA2Q96PC5 1412 aa13.13□□□□□ -0.31
USP3-217ENST00000560070 CEBPAP49715 358 aaPredicted RBP13.12□□□□□ -0.31
USP3-217ENST00000560070 ESF1Q9H501 851 aaKnown RBP13.12□□□□□ -0.31
USP3-217ENST00000560070 CDC42BPAQ5VT25 1732 aa13.12□□□□□ -0.31
USP3-217ENST00000560070 C9orf84Q5VXU9 1444 aa13.11□□□□□ -0.31
USP3-217ENST00000560070 FGD6Q6ZV73 1430 aa13.11□□□□□ -0.31
USP3-217ENST00000560070 RICTORQ6R327 1708 aa13.1□□□□□ -0.31
USP3-217ENST00000560070 ZMYM4Q5VZL5 1548 aa13.1□□□□□ -0.31
USP3-217ENST00000560070 KIF3BO15066 747 aa13.1□□□□□ -0.31
USP3-217ENST00000560070 CCDC141Q6ZP82 1450 aa13.08□□□□□ -0.32
USP3-217ENST00000560070 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
USP3-217ENST00000560070 KDM5CP41229 1560 aa13.07□□□□□ -0.32
USP3-217ENST00000560070 ABCC5O15440 1437 aa13.07□□□□□ -0.32
USP3-217ENST00000560070 ARHGEF40Q8TER5 1519 aa13.07□□□□□ -0.32
USP3-217ENST00000560070 RTEL1-TNFRSF6BF6WH68 1400 aa13.06□□□□□ -0.32
USP3-217ENST00000560070 A2MP01023 1474 aa13.06□□□□□ -0.32
USP3-217ENST00000560070 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP3-217ENST00000560070 ITSN2Q9NZM3 1697 aa13.05□□□□□ -0.32
USP3-217ENST00000560070 HECW2Q9P2P5 1572 aa13.04□□□□□ -0.32
USP3-217ENST00000560070 ATP7AQ04656 1500 aa13.03□□□□□ -0.32
USP3-217ENST00000560070 DIP2CQ9Y2E4 1556 aa13.03□□□□□ -0.32
USP3-217ENST00000560070 DAPK1P53355 1430 aa13.03□□□□□ -0.32
USP3-217ENST00000560070 TCOF1Q13428 1488 aaKnown RBP13.02□□□□□ -0.33
USP3-217ENST00000560070 WASHC2CQ9Y4E1 1318 aa13.01□□□□□ -0.33
USP3-217ENST00000560070 PTPRMP28827 1452 aa13.01□□□□□ -0.33
USP3-217ENST00000560070 ABCA6Q8N139 1617 aa13.01□□□□□ -0.33
USP3-217ENST00000560070 PTPN23Q9H3S7 1636 aa13.01□□□□□ -0.33
USP3-217ENST00000560070 ANKRD30AQ9BXX3 1397 aa13□□□□□ -0.33
USP3-217ENST00000560070 KIF15Q9NS87 1388 aa13□□□□□ -0.33
USP3-217ENST00000560070 KIDINS220Q9ULH0 1771 aa12.99□□□□□ -0.33
USP3-217ENST00000560070 ARHGEF5Q12774 1597 aa12.98□□□□□ -0.33
USP3-217ENST00000560070 PTPRKQ15262 1439 aa12.98□□□□□ -0.33
USP3-217ENST00000560070 ZMYM3Q14202 1370 aa12.97□□□□□ -0.33
USP3-217ENST00000560070 SIGLEC1Q9BZZ2 1709 aa12.97□□□□□ -0.33
USP3-217ENST00000560070 FBXO31Q5XUX0 539 aaPredicted RBP12.97□□□□□ -0.33
USP3-217ENST00000560070 AGLP35573 1532 aa12.97□□□□□ -0.33
USP3-217ENST00000560070 HSPA2P54652 639 aa12.96□□□□□ -0.33
USP3-217ENST00000560070 INO80Q9ULG1 1556 aaPredicted RBP12.95□□□□□ -0.34
USP3-217ENST00000560070 BCORL1Q5H9F3 1711 aa12.95□□□□□ -0.34
USP3-217ENST00000560070 NCOA1Q15788 1441 aa12.95□□□□□ -0.34
USP3-217ENST00000560070 MADDQ8WXG6 1647 aa12.95□□□□□ -0.34
USP3-217ENST00000560070 ADAMTSL3P82987 1691 aa12.94□□□□□ -0.34
USP3-217ENST00000560070 REREQ9P2R6 1566 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms