RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 CDC42BPBQ9Y5S2 1711 aa15.34■□□□□ 0.05
SPG11-214ENST00000558989 ARHGAP5Q13017 1502 aa15.33■□□□□ 0.05
SPG11-214ENST00000558989 PLCH2O75038 1416 aa15.33■□□□□ 0.04
SPG11-214ENST00000558989 FRMPD1Q5SYB0 1578 aa15.32■□□□□ 0.04
SPG11-214ENST00000558989 CDC42BPAQ5VT25 1732 aa15.32■□□□□ 0.04
SPG11-214ENST00000558989 RICTORQ6R327 1708 aa15.32■□□□□ 0.04
SPG11-214ENST00000558989 MTUS2Q5JR59 1369 aa15.31■□□□□ 0.04
SPG11-214ENST00000558989 ADRA2BP18089 450 aa15.31■□□□□ 0.04
SPG11-214ENST00000558989 ADGRL1O94910 1474 aa15.3■□□□□ 0.04
SPG11-214ENST00000558989 PHLDB1Q86UU1 1377 aa15.3■□□□□ 0.04
SPG11-214ENST00000558989 DENND4BO75064 1496 aaPredicted RBP15.3■□□□□ 0.04
SPG11-214ENST00000558989 EFCAB2Q5VUJ9 269 aa15.29■□□□□ 0.04
SPG11-214ENST00000558989 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
SPG11-214ENST00000558989 PREX2Q70Z35 1606 aa15.29■□□□□ 0.04
SPG11-214ENST00000558989 KDM4FA0A1W2PPD8 638 aa15.29■□□□□ 0.04
SPG11-214ENST00000558989 VPS8Q8N3P4 1428 aa15.28■□□□□ 0.04
SPG11-214ENST00000558989 SCAPERQ9BY12 1400 aa15.28■□□□□ 0.04
SPG11-214ENST00000558989 MYT1LQ9UL68 1186 aa15.27■□□□□ 0.03
SPG11-214ENST00000558989 TIAM1Q13009 1591 aa15.24■□□□□ 0.03
SPG11-214ENST00000558989 EHBP1L1Q8N3D4 1523 aa15.24■□□□□ 0.03
SPG11-214ENST00000558989 ARID4BQ4LE39 1312 aaPredicted RBP15.23■□□□□ 0.03
SPG11-214ENST00000558989 CCNB3Q8WWL7 1395 aa15.22■□□□□ 0.03
SPG11-214ENST00000558989 AFAP1Q8N556 730 aa15.22■□□□□ 0.03
SPG11-214ENST00000558989 POGZQ7Z3K3 1410 aa15.21■□□□□ 0.03
SPG11-214ENST00000558989 ITSN2Q9NZM3 1697 aa15.21■□□□□ 0.03
SPG11-214ENST00000558989 SUPT6HQ7KZ85 1726 aaKnown RBP15.21■□□□□ 0.03
SPG11-214ENST00000558989 GPATCH8Q9UKJ3 1502 aaKnown RBP15.21■□□□□ 0.03
SPG11-214ENST00000558989 YEATS2Q9ULM3 1422 aa15.21■□□□□ 0.03
SPG11-214ENST00000558989 ZFYVE16Q7Z3T8 1539 aa15.2■□□□□ 0.02
SPG11-214ENST00000558989 ARHGEF40Q8TER5 1519 aa15.2■□□□□ 0.02
SPG11-214ENST00000558989 SAMD9LQ8IVG5 1584 aa15.2■□□□□ 0.02
SPG11-214ENST00000558989 CFDP1Q9UEE9 299 aaPredicted RBP15.2■□□□□ 0.02
SPG11-214ENST00000558989 ABCC1P33527 1531 aa15.19■□□□□ 0.02
SPG11-214ENST00000558989 ARHGEF12Q9NZN5 1544 aa15.19■□□□□ 0.02
SPG11-214ENST00000558989 KANK4Q5T7N3 995 aaPredicted RBP15.18■□□□□ 0.02
SPG11-214ENST00000558989 SIGLEC1Q9BZZ2 1709 aa15.18■□□□□ 0.02
SPG11-214ENST00000558989 ZMYM4Q5VZL5 1548 aa15.17■□□□□ 0.02
SPG11-214ENST00000558989 HNRNPMP52272 730 aaKnown RBP eCLIP15.17■□□□□ 0.02
SPG11-214ENST00000558989 APLP2Q06481 763 aa15.17■□□□□ 0.02
SPG11-214ENST00000558989 TRAPPC8Q9Y2L5 1435 aa15.17■□□□□ 0.02
SPG11-214ENST00000558989 SYCP2Q9BX26 1530 aa15.17■□□□□ 0.02
SPG11-214ENST00000558989 MLECQ14165 292 aa15.17■□□□□ 0.02
SPG11-214ENST00000558989 NCOA2Q15596 1464 aa15.16■□□□□ 0.02
SPG11-214ENST00000558989 ZNF644Q9H582 1327 aaPredicted RBP15.16■□□□□ 0.02
SPG11-214ENST00000558989 ZNF518AQ6AHZ1 1483 aa15.16■□□□□ 0.02
SPG11-214ENST00000558989 LRRC9Q6ZRR7 1453 aa15.15■□□□□ 0.02
SPG11-214ENST00000558989 HECW2Q9P2P5 1572 aa15.14■□□□□ 0.01
SPG11-214ENST00000558989 BCORL1Q5H9F3 1711 aa15.14■□□□□ 0.01
SPG11-214ENST00000558989 PRKCSHP14314 528 aaPredicted RBP15.13■□□□□ 0.01
SPG11-214ENST00000558989 KDM5CP41229 1560 aa15.13■□□□□ 0.01
SPG11-214ENST00000558989 MAGI2Q86UL8 1455 aa15.12■□□□□ 0.01
SPG11-214ENST00000558989 ABCA6Q8N139 1617 aa15.11■□□□□ 0.01
SPG11-214ENST00000558989 MADDQ8WXG6 1647 aa15.11■□□□□ 0.01
SPG11-214ENST00000558989 KIDINS220Q9ULH0 1771 aa15.11■□□□□ 0.01
SPG11-214ENST00000558989 RIMS1Q86UR5 1692 aaKnown RBP15.1■□□□□ 0.01
SPG11-214ENST00000558989 ADAMTSL3P82987 1691 aa15.1■□□□□ 0.01
SPG11-214ENST00000558989 ATP10AO60312 1499 aa15.1■□□□□ 0.01
SPG11-214ENST00000558989 DIP2CQ9Y2E4 1556 aa15.09■□□□□ 0.01
SPG11-214ENST00000558989 MAP3K1Q13233 1512 aa15.08■□□□□ 0
SPG11-214ENST00000558989 C9orf84Q5VXU9 1444 aa15.08■□□□□ 0
SPG11-214ENST00000558989 SPAG9O60271 1321 aaKnown RBP15.07■□□□□ 0
SPG11-214ENST00000558989 CAMSAP2Q08AD1 1489 aa15.07■□□□□ 0
SPG11-214ENST00000558989 PLEKHH2Q8IVE3 1493 aa15.07■□□□□ 0
SPG11-214ENST00000558989 FER1L4A9Z1Z3 1794 aa15.07■□□□□ 0
SPG11-214ENST00000558989 PPARGC1BQ86YN6 1023 aaKnown RBP15.06■□□□□ 0
SPG11-214ENST00000558989 ARXQ96QS3 562 aa15.06■□□□□ 0
SPG11-214ENST00000558989 MLH3Q9UHC1 1453 aa15.06■□□□□ 0
SPG11-214ENST00000558989 ATP7AQ04656 1500 aa15.04■□□□□ -0
SPG11-214ENST00000558989 KIAA1107Q9UPP5 1409 aa15.04■□□□□ -0
SPG11-214ENST00000558989 PTPRMP28827 1452 aa15.03■□□□□ -0
SPG11-214ENST00000558989 INO80Q9ULG1 1556 aaPredicted RBP15.02□□□□□ -0.01
SPG11-214ENST00000558989 MYOM3Q5VTT5 1437 aa15.01□□□□□ -0.01
SPG11-214ENST00000558989 BCANQ96GW7 911 aa15.01□□□□□ -0.01
SPG11-214ENST00000558989 MBD5Q9P267 1494 aa15.01□□□□□ -0.01
SPG11-214ENST00000558989 ZBTB22O15209 634 aa15□□□□□ -0.01
SPG11-214ENST00000558989 TAOK2Q9UL54 1235 aa15□□□□□ -0.01
SPG11-214ENST00000558989 CCDC141Q6ZP82 1450 aa14.99□□□□□ -0.01
SPG11-214ENST00000558989 ADGBQ8N7X0 1667 aa14.98□□□□□ -0.01
SPG11-214ENST00000558989 PTPN23Q9H3S7 1636 aa14.97□□□□□ -0.01
SPG11-214ENST00000558989 CEBPAP49715 358 aaPredicted RBP14.96□□□□□ -0.01
SPG11-214ENST00000558989 REREQ9P2R6 1566 aa14.96□□□□□ -0.01
SPG11-214ENST00000558989 A2MP01023 1474 aa14.95□□□□□ -0.02
SPG11-214ENST00000558989 TSPY4P0CV99 314 aa14.95□□□□□ -0.02
SPG11-214ENST00000558989 TSPY10P0CW01 314 aa14.95□□□□□ -0.02
SPG11-214ENST00000558989 ESF1Q9H501 851 aaKnown RBP14.95□□□□□ -0.02
SPG11-214ENST00000558989 ARHGEF5Q12774 1597 aa14.95□□□□□ -0.02
SPG11-214ENST00000558989 GGT6Q6P531 493 aa14.94□□□□□ -0.02
SPG11-214ENST00000558989 MIA2Q96PC5 1412 aa14.94□□□□□ -0.02
SPG11-214ENST00000558989 AGLP35573 1532 aa14.92□□□□□ -0.02
SPG11-214ENST00000558989 FAM50AQ14320 339 aaKnown RBP14.92□□□□□ -0.02
SPG11-214ENST00000558989 FGD6Q6ZV73 1430 aa14.92□□□□□ -0.02
SPG11-214ENST00000558989 RSPH4AQ5TD94 716 aa14.92□□□□□ -0.02
SPG11-214ENST00000558989 CLTCQ00610 1675 aaKnown RBP14.91□□□□□ -0.02
SPG11-214ENST00000558989 PLXNC1O60486 1568 aa14.91□□□□□ -0.02
SPG11-214ENST00000558989 C3P01024 1663 aa14.91□□□□□ -0.02
SPG11-214ENST00000558989 RTEL1-TNFRSF6BF6WH68 1400 aa14.9□□□□□ -0.02
SPG11-214ENST00000558989 CROCC2H7BZ55 1655 aa14.9□□□□□ -0.02
SPG11-214ENST00000558989 CHIC2Q9UKJ5 165 aa14.89□□□□□ -0.03
SPG11-214ENST00000558989 KIF3BO15066 747 aa14.89□□□□□ -0.03
SPG11-214ENST00000558989 DHX29Q7Z478 1369 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms