RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ZNF316A6NFI3 1004 aaPredicted RBP4.92□□□□□ -1.62
USP3-209ENST00000558925 FBXO3Q9UK99 471 aa4.9□□□□□ -1.63
USP3-209ENST00000558925 AXIN2Q9Y2T1 843 aa4.9□□□□□ -1.63
USP3-209ENST00000558925 IFNLR1Q8IU57 520 aaPredicted RBP4.88□□□□□ -1.63
USP3-209ENST00000558925 CIZ1Q9ULV3 898 aaPredicted RBP4.88□□□□□ -1.63
USP3-209ENST00000558925 PHF8Q9UPP1 1060 aa4.87□□□□□ -1.63
USP3-209ENST00000558925 NUDT7P0C024 238 aa4.86□□□□□ -1.63
USP3-209ENST00000558925 HCSTQ9UBK5 93 aa4.85□□□□□ -1.63
USP3-209ENST00000558925 LHX6Q9UPM6 363 aa4.85□□□□□ -1.63
USP3-209ENST00000558925 SPOCK2Q92563 424 aa4.84□□□□□ -1.63
USP3-209ENST00000558925 RNF25Q96BH1 459 aaPredicted RBP4.84□□□□□ -1.63
USP3-209ENST00000558925 KIF3CO14782 793 aa4.83□□□□□ -1.64
USP3-209ENST00000558925 PBX2P40425 430 aa4.83□□□□□ -1.64
USP3-209ENST00000558925 ADGRD1Q6QNK2 874 aa4.83□□□□□ -1.64
USP3-209ENST00000558925 SOX12O15370 315 aa4.82□□□□□ -1.64
USP3-209ENST00000558925 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.81□□□□□ -1.64
USP3-209ENST00000558925 ZFP91Q96JP5 570 aaPredicted RBP4.81□□□□□ -1.64
USP3-209ENST00000558925 C2orf72A6NCS6 295 aa4.8□□□□□ -1.64
USP3-209ENST00000558925 HRO43593 1189 aa4.8□□□□□ -1.64
USP3-209ENST00000558925 DMRTA1Q5VZB9 504 aa4.8□□□□□ -1.64
USP3-209ENST00000558925 FBXO22Q8NEZ5 403 aa4.8□□□□□ -1.64
USP3-209ENST00000558925 PCDHGA4Q9Y5G9 962 aa4.8□□□□□ -1.64
USP3-209ENST00000558925 KDM4FA0A1W2PPD8 638 aa4.78□□□□□ -1.64
USP3-209ENST00000558925 ARHGAP33O14559 1287 aa4.78□□□□□ -1.64
USP3-209ENST00000558925 PSEN2P49810 448 aa4.78□□□□□ -1.64
USP3-209ENST00000558925 KCTD12Q96CX2 325 aaKnown RBP4.77□□□□□ -1.65
USP3-209ENST00000558925 RIOK3O14730 519 aaKnown RBP4.76□□□□□ -1.65
USP3-209ENST00000558925 SLC34A2O95436 690 aa4.76□□□□□ -1.65
USP3-209ENST00000558925 MFRPQ9BY79 579 aa4.75□□□□□ -1.65
USP3-209ENST00000558925 TK2O00142 265 aa4.74□□□□□ -1.65
USP3-209ENST00000558925 IRX2Q9BZI1 471 aaPredicted RBP4.74□□□□□ -1.65
USP3-209ENST00000558925 NLRP6P59044 892 aa4.73□□□□□ -1.65
USP3-209ENST00000558925 VGFO15240 615 aaPredicted RBP4.72□□□□□ -1.65
USP3-209ENST00000558925 TRIM41Q8WV44 630 aa4.72□□□□□ -1.65
USP3-209ENST00000558925 PTPN5P54829 565 aa4.71□□□□□ -1.66
USP3-209ENST00000558925 A0A0G2JS52 829 aa4.7□□□□□ -1.66
USP3-209ENST00000558925 BCL11BQ9C0K0 894 aaPredicted RBP4.7□□□□□ -1.66
USP3-209ENST00000558925 RGS20O76081 388 aa4.69□□□□□ -1.66
USP3-209ENST00000558925 IFFO2Q5TF58 517 aa4.69□□□□□ -1.66
USP3-209ENST00000558925 PSDA5PKW4 1024 aaPredicted RBP4.68□□□□□ -1.66
USP3-209ENST00000558925 LCE2BO14633 110 aa4.68□□□□□ -1.66
USP3-209ENST00000558925 PTCD2Q8WV60 388 aaKnown RBP4.68□□□□□ -1.66
USP3-209ENST00000558925 KCNK17Q96T54 332 aa4.68□□□□□ -1.66
USP3-209ENST00000558925 VPS9D1Q9Y2B5 631 aa4.68□□□□□ -1.66
USP3-209ENST00000558925 PPP1R37O75864 691 aa4.67□□□□□ -1.66
USP3-209ENST00000558925 THSD4Q6ZMP0 1018 aa4.66□□□□□ -1.66
USP3-209ENST00000558925 TMC2Q8TDI7 906 aa4.66□□□□□ -1.66
USP3-209ENST00000558925 STK24Q9Y6E0 443 aa4.66□□□□□ -1.66
USP3-209ENST00000558925 BHMG1C9JSJ3 638 aaPredicted RBP4.65□□□□□ -1.67
USP3-209ENST00000558925 PPP4R3BQ5MIZ7 849 aa4.64□□□□□ -1.67
USP3-209ENST00000558925 Q6ZNB5 142 aa4.62□□□□□ -1.67
USP3-209ENST00000558925 STAC3Q96MF2 364 aa4.62□□□□□ -1.67
USP3-209ENST00000558925 STK25O00506 426 aa4.61□□□□□ -1.67
USP3-209ENST00000558925 PLPP6Q8IY26 295 aa4.61□□□□□ -1.67
USP3-209ENST00000558925 FOXK1P85037 733 aa4.6□□□□□ -1.67
USP3-209ENST00000558925 DSG2Q14126 1118 aa4.6□□□□□ -1.67
USP3-209ENST00000558925 WNT2BQ93097 391 aa4.6□□□□□ -1.67
USP3-209ENST00000558925 ZBED2Q9BTP6 218 aa4.6□□□□□ -1.67
USP3-209ENST00000558925 SLC4A5Q9BY07 1137 aa4.6□□□□□ -1.67
USP3-209ENST00000558925 ITGBL1O95965 494 aaPredicted RBP4.59□□□□□ -1.67
USP3-209ENST00000558925 ZNF454Q8N9F8 522 aa4.58□□□□□ -1.68
USP3-209ENST00000558925 BCL2L12Q9HB09 334 aa4.58□□□□□ -1.68
USP3-209ENST00000558925 GPHNQ9NQX3 736 aaPredicted RBP4.58□□□□□ -1.68
USP3-209ENST00000558925 MRPL50Q8N5N7 158 aaKnown RBP4.56□□□□□ -1.68
USP3-209ENST00000558925 OXER1Q8TDS5 423 aa4.56□□□□□ -1.68
USP3-209ENST00000558925 FOSBP53539 338 aa4.55□□□□□ -1.68
USP3-209ENST00000558925 UPF1Q92900 1129 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP3-209ENST00000558925 KCNH8Q96L42 1107 aa4.55□□□□□ -1.68
USP3-209ENST00000558925 GOLGA8CPA6NN73 597 aa4.54□□□□□ -1.68
USP3-209ENST00000558925 BCAMP50895 628 aa4.54□□□□□ -1.68
USP3-209ENST00000558925 ADAM33Q9BZ11 813 aa4.54□□□□□ -1.68
USP3-209ENST00000558925 RGL2O15211 777 aa4.53□□□□□ -1.68
USP3-209ENST00000558925 TBC1D12O60347 775 aa4.53□□□□□ -1.68
USP3-209ENST00000558925 PTPREP23469 700 aa4.53□□□□□ -1.68
USP3-209ENST00000558925 PROX2Q3B8N5 592 aa4.52□□□□□ -1.69
USP3-209ENST00000558925 TRAF7Q6Q0C0 670 aa4.52□□□□□ -1.69
USP3-209ENST00000558925 TAOK2Q9UL54 1235 aa4.51□□□□□ -1.69
USP3-209ENST00000558925 GFRA3O60609 400 aa4.5□□□□□ -1.69
USP3-209ENST00000558925 COL9A1P20849 921 aa4.5□□□□□ -1.69
USP3-209ENST00000558925 JPH4Q96JJ6 628 aa4.5□□□□□ -1.69
USP3-209ENST00000558925 NBPF3Q9H094 633 aa4.5□□□□□ -1.69
USP3-209ENST00000558925 ANO8Q9HCE9 1232 aaPredicted RBP4.5□□□□□ -1.69
USP3-209ENST00000558925 WBP1LQ9NX94 342 aa4.5□□□□□ -1.69
USP3-209ENST00000558925 SOWAHBA6NEL2 793 aa4.49□□□□□ -1.69
USP3-209ENST00000558925 ECM2O94769 699 aaPredicted RBP4.49□□□□□ -1.69
USP3-209ENST00000558925 ANKK1Q8NFD2 765 aa4.49□□□□□ -1.69
USP3-209ENST00000558925 ZDHHC16Q969W1 377 aa4.49□□□□□ -1.69
USP3-209ENST00000558925 KCNC4Q03721 635 aa4.48□□□□□ -1.69
USP3-209ENST00000558925 PKD2Q13563 968 aa4.48□□□□□ -1.69
USP3-209ENST00000558925 RABGEF1Q9UJ41 708 aa4.48□□□□□ -1.69
USP3-209ENST00000558925 LAPTM4AQ15012 233 aa4.47□□□□□ -1.69
USP3-209ENST00000558925 ZNF775Q96BV0 537 aaPredicted RBP4.47□□□□□ -1.69
USP3-209ENST00000558925 CRISPLD2Q9H0B8 497 aa4.47□□□□□ -1.69
USP3-209ENST00000558925 PPP1R3GB7ZBB8 358 aa4.46□□□□□ -1.7
USP3-209ENST00000558925 EVI5O60447 810 aa4.46□□□□□ -1.7
USP3-209ENST00000558925 ZFRQ96KR1 1074 aaKnown RBP4.46□□□□□ -1.7
USP3-209ENST00000558925 NCKAP5LQ9HCH0 1330 aa4.46□□□□□ -1.7
USP3-209ENST00000558925 NRG2O14511 850 aaPredicted RBP4.45□□□□□ -1.7
USP3-209ENST00000558925 PPP1R15BQ5SWA1 713 aa4.45□□□□□ -1.7
USP3-209ENST00000558925 SEPT9Q9UHD8 586 aaPredicted RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms