RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 COLQQ9Y215 455 aaPredicted RBP12.2□□□□□ -0.46
LRRC28-209ENST00000558861 POTEIP0CG38 1075 aa12.19□□□□□ -0.46
LRRC28-209ENST00000558861 TPRNQ4KMQ1 711 aa12.18□□□□□ -0.46
LRRC28-209ENST00000558861 BOLA1Q9Y3E2 137 aa12.18□□□□□ -0.46
LRRC28-209ENST00000558861 SEC24BO95487 1268 aa12.17□□□□□ -0.46
LRRC28-209ENST00000558861 TMEM121BQ9BXQ6 578 aaPredicted RBP12.16□□□□□ -0.46
LRRC28-209ENST00000558861 SLC39A7Q92504 469 aa12.15□□□□□ -0.46
LRRC28-209ENST00000558861 ARHGEF1Q92888 912 aaKnown RBP12.15□□□□□ -0.46
LRRC28-209ENST00000558861 GPHNQ9NQX3 736 aaPredicted RBP12.15□□□□□ -0.46
LRRC28-209ENST00000558861 ABCC9O60706 1549 aa12.15□□□□□ -0.46
LRRC28-209ENST00000558861 POTEFA5A3E0 1075 aa12.14□□□□□ -0.47
LRRC28-209ENST00000558861 G3V3G9 751 aa12.13□□□□□ -0.47
LRRC28-209ENST00000558861 PPP1R15BQ5SWA1 713 aa12.13□□□□□ -0.47
LRRC28-209ENST00000558861 METRNQ9UJH8 293 aa12.13□□□□□ -0.47
LRRC28-209ENST00000558861 C7P10643 843 aa12.11□□□□□ -0.47
LRRC28-209ENST00000558861 DSG2Q14126 1118 aa12.11□□□□□ -0.47
LRRC28-209ENST00000558861 CAMK2BQ13554 666 aa12.1□□□□□ -0.47
LRRC28-209ENST00000558861 TMC2Q8TDI7 906 aa12.1□□□□□ -0.47
LRRC28-209ENST00000558861 L3MBTL3Q96JM7 780 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-209ENST00000558861 C2orf72A6NCS6 295 aa12.08□□□□□ -0.48
LRRC28-209ENST00000558861 KIF3CO14782 793 aa12.05□□□□□ -0.48
LRRC28-209ENST00000558861 FOXK1P85037 733 aa12.05□□□□□ -0.48
LRRC28-209ENST00000558861 TMEM92Q6UXU6 159 aa12.05□□□□□ -0.48
LRRC28-209ENST00000558861 SEMA3EO15041 775 aa12.04□□□□□ -0.48
LRRC28-209ENST00000558861 EMILIN3Q9NT22 766 aa12.03□□□□□ -0.48
LRRC28-209ENST00000558861 ARIH1Q9Y4X5 557 aaPredicted RBP12.03□□□□□ -0.48
LRRC28-209ENST00000558861 PLPP6Q8IY26 295 aa12.01□□□□□ -0.49
LRRC28-209ENST00000558861 TESPA1A2RU30 521 aaPredicted RBP11.99□□□□□ -0.49
LRRC28-209ENST00000558861 DPYSL4O14531 572 aa11.98□□□□□ -0.49
LRRC28-209ENST00000558861 LMOD2Q6P5Q4 547 aa11.98□□□□□ -0.49
LRRC28-209ENST00000558861 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.98□□□□□ -0.49
LRRC28-209ENST00000558861 C3orf67Q6ZVT6 689 aa11.97□□□□□ -0.49
LRRC28-209ENST00000558861 TULP1O00294 542 aaPredicted RBP11.93□□□□□ -0.5
LRRC28-209ENST00000558861 UPF1Q92900 1129 aaKnown RBP eCLIP11.91□□□□□ -0.5
LRRC28-209ENST00000558861 ZCCHC6Q5VYS8 1495 aaKnown RBP11.9□□□□□ -0.5
LRRC28-209ENST00000558861 MLLT3P42568 568 aaPredicted RBP11.9□□□□□ -0.5
LRRC28-209ENST00000558861 PDIA6Q15084 440 aa11.9□□□□□ -0.5
LRRC28-209ENST00000558861 SPDYE16A6NNV3 312 aaPredicted RBP11.86□□□□□ -0.51
LRRC28-209ENST00000558861 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.86□□□□□ -0.51
LRRC28-209ENST00000558861 MAP3K9P80192 1104 aa11.85□□□□□ -0.51
LRRC28-209ENST00000558861 OXER1Q8TDS5 423 aa11.85□□□□□ -0.51
LRRC28-209ENST00000558861 POTEJP0CG39 1038 aa11.84□□□□□ -0.51
LRRC28-209ENST00000558861 SMYD5Q6GMV2 418 aa11.84□□□□□ -0.51
LRRC28-209ENST00000558861 MYO15BQ96JP2 1530 aa11.82□□□□□ -0.52
LRRC28-209ENST00000558861 POTEB2H3BUK9 544 aa11.82□□□□□ -0.52
LRRC28-209ENST00000558861 ZC3H15Q8WU90 426 aaKnown RBP11.81□□□□□ -0.52
LRRC28-209ENST00000558861 DCAF1Q9Y4B6 1507 aa11.81□□□□□ -0.52
LRRC28-209ENST00000558861 RBM26Q5T8P6 1007 aaKnown RBP11.8□□□□□ -0.52
LRRC28-209ENST00000558861 NACADO15069 1562 aa11.77□□□□□ -0.53
LRRC28-209ENST00000558861 PTCD2Q8WV60 388 aaKnown RBP11.77□□□□□ -0.53
LRRC28-209ENST00000558861 GRXCR2A6NFK2 248 aa11.75□□□□□ -0.53
LRRC28-209ENST00000558861 EVI5O60447 810 aa11.75□□□□□ -0.53
LRRC28-209ENST00000558861 SLC34A2O95436 690 aa11.75□□□□□ -0.53
LRRC28-209ENST00000558861 TBC1D12O60347 775 aa11.73□□□□□ -0.53
LRRC28-209ENST00000558861 GPIHBP1Q8IV16 184 aa11.73□□□□□ -0.53
LRRC28-209ENST00000558861 DDX12PQ92771 950 aa11.73□□□□□ -0.53
LRRC28-209ENST00000558861 RB1CC1Q8TDY2 1594 aa11.71□□□□□ -0.53
LRRC28-209ENST00000558861 PTGER2P43116 358 aa11.69□□□□□ -0.54
LRRC28-209ENST00000558861 SLAIN1Q8ND83 568 aa11.69□□□□□ -0.54
LRRC28-209ENST00000558861 PCDHGA4Q9Y5G9 962 aa11.69□□□□□ -0.54
LRRC28-209ENST00000558861 ZNF316A6NFI3 1004 aaPredicted RBP11.68□□□□□ -0.54
LRRC28-209ENST00000558861 ZMYND10O75800 440 aa11.68□□□□□ -0.54
LRRC28-209ENST00000558861 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
LRRC28-209ENST00000558861 OSBPP22059 807 aa11.67□□□□□ -0.54
LRRC28-209ENST00000558861 HOXB3P14651 431 aaPredicted RBP11.65□□□□□ -0.54
LRRC28-209ENST00000558861 PRIM1P49642 420 aaKnown RBP11.65□□□□□ -0.54
LRRC28-209ENST00000558861 MAMSTRQ6ZN01 415 aa11.65□□□□□ -0.54
LRRC28-209ENST00000558861 SLC24A3Q9HC58 644 aa11.65□□□□□ -0.54
LRRC28-209ENST00000558861 ANO8Q9HCE9 1232 aaPredicted RBP11.65□□□□□ -0.54
LRRC28-209ENST00000558861 GPR37O15354 613 aa11.64□□□□□ -0.55
LRRC28-209ENST00000558861 BARGINQ6ZT62 677 aa11.63□□□□□ -0.55
LRRC28-209ENST00000558861 NUTM2FA1L443 756 aa11.62□□□□□ -0.55
LRRC28-209ENST00000558861 KDM4FA0A1W2PPD8 638 aa11.61□□□□□ -0.55
LRRC28-209ENST00000558861 DOK7Q18PE1 504 aa11.61□□□□□ -0.55
LRRC28-209ENST00000558861 KHSRPQ92945 711 aaKnown RBP eCLIP11.61□□□□□ -0.55
LRRC28-209ENST00000558861 ARSIQ5FYB1 569 aa11.58□□□□□ -0.56
LRRC28-209ENST00000558861 NUDT7P0C024 238 aa11.57□□□□□ -0.56
LRRC28-209ENST00000558861 PHF14O94880 888 aa11.56□□□□□ -0.56
LRRC28-209ENST00000558861 PCDHGA10Q9Y5H3 936 aa11.56□□□□□ -0.56
LRRC28-209ENST00000558861 KRI1Q8N9T8 703 aaKnown RBP11.55□□□□□ -0.56
LRRC28-209ENST00000558861 RIMBP2O15034 1052 aa11.54□□□□□ -0.56
LRRC28-209ENST00000558861 BRPF1P55201 1214 aaPredicted RBP11.54□□□□□ -0.56
LRRC28-209ENST00000558861 EN1Q05925 392 aaPredicted RBP11.54□□□□□ -0.56
LRRC28-209ENST00000558861 GPR153Q6NV75 609 aa11.54□□□□□ -0.56
LRRC28-209ENST00000558861 RBM33Q96EV2 1170 aaKnown RBP11.54□□□□□ -0.56
LRRC28-209ENST00000558861 EPAS1Q99814 870 aa11.54□□□□□ -0.56
LRRC28-209ENST00000558861 CDHR5Q9HBB8 845 aa11.54□□□□□ -0.56
LRRC28-209ENST00000558861 ZNF710Q8N1W2 664 aa11.53□□□□□ -0.56
LRRC28-209ENST00000558861 OTUD5Q96G74 571 aa11.53□□□□□ -0.56
LRRC28-209ENST00000558861 JPH4Q96JJ6 628 aa11.53□□□□□ -0.56
LRRC28-209ENST00000558861 ZSWIM6Q9HCJ5 1215 aa11.53□□□□□ -0.56
LRRC28-209ENST00000558861 MAP3K7O43318 606 aa11.52□□□□□ -0.57
LRRC28-209ENST00000558861 FCHSD2O94868 740 aa11.52□□□□□ -0.57
LRRC28-209ENST00000558861 FOSBP53539 338 aa11.51□□□□□ -0.57
LRRC28-209ENST00000558861 TYW1BQ6NUM6 668 aa11.51□□□□□ -0.57
LRRC28-209ENST00000558861 FECHP22830 423 aa11.5□□□□□ -0.57
LRRC28-209ENST00000558861 PTGDRQ13258 359 aa11.5□□□□□ -0.57
LRRC28-209ENST00000558861 TSR1Q2NL82 804 aaKnown RBP11.5□□□□□ -0.57
LRRC28-209ENST00000558861 AK7Q96M32 723 aa11.5□□□□□ -0.57
LRRC28-209ENST00000558861 GNPATO15228 680 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms