RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 MYO5CQ9NQX4 1742 aa13.25□□□□□ -0.29
TRAF3-205ENST00000558700 FANCAO15360 1455 aa13.25□□□□□ -0.29
TRAF3-205ENST00000558700 ZMYM4Q5VZL5 1548 aa13.23□□□□□ -0.29
TRAF3-205ENST00000558700 DENND4BO75064 1496 aaPredicted RBP13.23□□□□□ -0.29
TRAF3-205ENST00000558700 LRRIQ1Q96JM4 1722 aa13.23□□□□□ -0.29
TRAF3-205ENST00000558700 PCF11O94913 1555 aaKnown RBP13.23□□□□□ -0.29
TRAF3-205ENST00000558700 AKNAQ7Z591 1439 aa13.22□□□□□ -0.29
TRAF3-205ENST00000558700 CCDC18Q5T9S5 1454 aa13.21□□□□□ -0.3
TRAF3-205ENST00000558700 ADAMTSL3P82987 1691 aa13.21□□□□□ -0.3
TRAF3-205ENST00000558700 CLIP1P30622 1438 aa13.21□□□□□ -0.3
TRAF3-205ENST00000558700 HECW2Q9P2P5 1572 aa13.2□□□□□ -0.3
TRAF3-205ENST00000558700 BCORL1Q5H9F3 1711 aa13.2□□□□□ -0.3
TRAF3-205ENST00000558700 RAPGEF3O95398 923 aa13.19□□□□□ -0.3
TRAF3-205ENST00000558700 AMER1Q5JTC6 1135 aaPredicted RBP13.19□□□□□ -0.3
TRAF3-205ENST00000558700 TROQ12816 1431 aaPredicted RBP13.19□□□□□ -0.3
TRAF3-205ENST00000558700 ZFYVE16Q7Z3T8 1539 aa13.18□□□□□ -0.3
TRAF3-205ENST00000558700 CDK11AQ9UQ88 783 aaPredicted RBP13.18□□□□□ -0.3
TRAF3-205ENST00000558700 FYCO1Q9BQS8 1478 aa13.17□□□□□ -0.3
TRAF3-205ENST00000558700 PLCH2O75038 1416 aa13.17□□□□□ -0.3
TRAF3-205ENST00000558700 POGZQ7Z3K3 1410 aa13.17□□□□□ -0.3
TRAF3-205ENST00000558700 CASKIN1Q8WXD9 1431 aa13.17□□□□□ -0.3
TRAF3-205ENST00000558700 HOXD11P31277 338 aaPredicted RBP13.17□□□□□ -0.3
TRAF3-205ENST00000558700 ATP1B4Q9UN42 357 aaPredicted RBP13.17□□□□□ -0.3
TRAF3-205ENST00000558700 DMRT2Q9Y5R5 561 aa13.17□□□□□ -0.3
TRAF3-205ENST00000558700 MADDQ8WXG6 1647 aa13.16□□□□□ -0.3
TRAF3-205ENST00000558700 MAGI2Q86UL8 1455 aa13.16□□□□□ -0.3
TRAF3-205ENST00000558700 PREX2Q70Z35 1606 aa13.15□□□□□ -0.3
TRAF3-205ENST00000558700 ARHGAP5Q13017 1502 aa13.14□□□□□ -0.31
TRAF3-205ENST00000558700 PTPRMP28827 1452 aa13.13□□□□□ -0.31
TRAF3-205ENST00000558700 SCAPERQ9BY12 1400 aa13.13□□□□□ -0.31
TRAF3-205ENST00000558700 RIMS1Q86UR5 1692 aaKnown RBP13.12□□□□□ -0.31
TRAF3-205ENST00000558700 SLC24A1O60721 1099 aa13.12□□□□□ -0.31
TRAF3-205ENST00000558700 ZNF518AQ6AHZ1 1483 aa13.11□□□□□ -0.31
TRAF3-205ENST00000558700 CDC42BPBQ9Y5S2 1711 aa13.11□□□□□ -0.31
TRAF3-205ENST00000558700 KDM5CP41229 1560 aa13.11□□□□□ -0.31
TRAF3-205ENST00000558700 ARID4BQ4LE39 1312 aaPredicted RBP13.11□□□□□ -0.31
TRAF3-205ENST00000558700 SIGLEC1Q9BZZ2 1709 aa13.1□□□□□ -0.31
TRAF3-205ENST00000558700 FER1L4A9Z1Z3 1794 aa13.1□□□□□ -0.31
TRAF3-205ENST00000558700 YEATS2Q9ULM3 1422 aa13.1□□□□□ -0.31
TRAF3-205ENST00000558700 ATXN8OSP0DMR3 200 aa13.09□□□□□ -0.31
TRAF3-205ENST00000558700 CDC42BPAQ5VT25 1732 aa13.09□□□□□ -0.31
TRAF3-205ENST00000558700 EFCAB2Q5VUJ9 269 aa13.09□□□□□ -0.31
TRAF3-205ENST00000558700 ITSN2Q9NZM3 1697 aa13.08□□□□□ -0.31
TRAF3-205ENST00000558700 ABCC1P33527 1531 aa13.08□□□□□ -0.31
TRAF3-205ENST00000558700 RTN4Q9NQC3 1192 aaKnown RBP13.08□□□□□ -0.32
TRAF3-205ENST00000558700 C9orf84Q5VXU9 1444 aa13.07□□□□□ -0.32
TRAF3-205ENST00000558700 MYCNP04198 464 aaPredicted RBP13.07□□□□□ -0.32
TRAF3-205ENST00000558700 SLC4A2P04920 1241 aa13.07□□□□□ -0.32
TRAF3-205ENST00000558700 ATP10AO60312 1499 aa13.05□□□□□ -0.32
TRAF3-205ENST00000558700 DIP2CQ9Y2E4 1556 aa13.05□□□□□ -0.32
TRAF3-205ENST00000558700 REREQ9P2R6 1566 aa13.04□□□□□ -0.32
TRAF3-205ENST00000558700 ABCA6Q8N139 1617 aa13.04□□□□□ -0.32
TRAF3-205ENST00000558700 ARHGEF12Q9NZN5 1544 aa13.03□□□□□ -0.32
TRAF3-205ENST00000558700 EHBP1L1Q8N3D4 1523 aa13.02□□□□□ -0.33
TRAF3-205ENST00000558700 LMTK3Q96Q04 1460 aa13.01□□□□□ -0.33
TRAF3-205ENST00000558700 MLH3Q9UHC1 1453 aa13.01□□□□□ -0.33
TRAF3-205ENST00000558700 SAMD9LQ8IVG5 1584 aa13.01□□□□□ -0.33
TRAF3-205ENST00000558700 SYCP2Q9BX26 1530 aa13□□□□□ -0.33
TRAF3-205ENST00000558700 CEP162Q5TB80 1403 aa13□□□□□ -0.33
TRAF3-205ENST00000558700 KIDINS220Q9ULH0 1771 aa12.99□□□□□ -0.33
TRAF3-205ENST00000558700 TRAPPC8Q9Y2L5 1435 aa12.98□□□□□ -0.33
TRAF3-205ENST00000558700 MTUS2Q5JR59 1369 aa12.98□□□□□ -0.33
TRAF3-205ENST00000558700 PREX1Q8TCU6 1659 aa12.98□□□□□ -0.33
TRAF3-205ENST00000558700 AGLP35573 1532 aa12.98□□□□□ -0.33
TRAF3-205ENST00000558700 GPATCH8Q9UKJ3 1502 aaKnown RBP12.98□□□□□ -0.33
TRAF3-205ENST00000558700 PLEKHH2Q8IVE3 1493 aa12.97□□□□□ -0.33
TRAF3-205ENST00000558700 TIAM1Q13009 1591 aa12.97□□□□□ -0.33
TRAF3-205ENST00000558700 MLECQ14165 292 aa12.96□□□□□ -0.33
TRAF3-205ENST00000558700 FKBP8Q14318 412 aa12.96□□□□□ -0.33
TRAF3-205ENST00000558700 AFAP1Q8N556 730 aa12.96□□□□□ -0.33
TRAF3-205ENST00000558700 MYT1LQ9UL68 1186 aa12.96□□□□□ -0.33
TRAF3-205ENST00000558700 CCNB3Q8WWL7 1395 aa12.95□□□□□ -0.34
TRAF3-205ENST00000558700 INO80Q9ULG1 1556 aaPredicted RBP12.95□□□□□ -0.34
TRAF3-205ENST00000558700 ATP7AQ04656 1500 aa12.94□□□□□ -0.34
TRAF3-205ENST00000558700 SUPT6HQ7KZ85 1726 aaKnown RBP12.94□□□□□ -0.34
TRAF3-205ENST00000558700 KIAA1107Q9UPP5 1409 aa12.93□□□□□ -0.34
TRAF3-205ENST00000558700 C3P01024 1663 aa12.92□□□□□ -0.34
TRAF3-205ENST00000558700 PLXNC1O60486 1568 aa12.91□□□□□ -0.34
TRAF3-205ENST00000558700 ZNF777Q9ULD5 760 aaPredicted RBP12.91□□□□□ -0.34
TRAF3-205ENST00000558700 MROH2AA6NES4 1674 aa12.9□□□□□ -0.34
TRAF3-205ENST00000558700 ADGBQ8N7X0 1667 aa12.9□□□□□ -0.34
TRAF3-205ENST00000558700 CFDP1Q9UEE9 299 aaPredicted RBP12.9□□□□□ -0.34
TRAF3-205ENST00000558700 CNTLNQ9NXG0 1405 aa12.88□□□□□ -0.35
TRAF3-205ENST00000558700 UHRF1BP1Q6BDS2 1440 aa12.88□□□□□ -0.35
TRAF3-205ENST00000558700 VPS8Q8N3P4 1428 aa12.88□□□□□ -0.35
TRAF3-205ENST00000558700 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
TRAF3-205ENST00000558700 NCOA2Q15596 1464 aa12.87□□□□□ -0.35
TRAF3-205ENST00000558700 ILDR1Q86SU0 546 aaPredicted RBP12.87□□□□□ -0.35
TRAF3-205ENST00000558700 A2MP01023 1474 aa12.85□□□□□ -0.35
TRAF3-205ENST00000558700 ESF1Q9H501 851 aaKnown RBP12.85□□□□□ -0.35
TRAF3-205ENST00000558700 SETD1BQ9UPS6 1966 aaKnown RBP12.85□□□□□ -0.35
TRAF3-205ENST00000558700 CAMSAP2Q08AD1 1489 aa12.85□□□□□ -0.35
TRAF3-205ENST00000558700 HNRNPMP52272 730 aaKnown RBP eCLIP12.84□□□□□ -0.35
TRAF3-205ENST00000558700 HSPA2P54652 639 aa12.84□□□□□ -0.35
TRAF3-205ENST00000558700 CCDC141Q6ZP82 1450 aa12.84□□□□□ -0.35
TRAF3-205ENST00000558700 CLTCQ00610 1675 aaKnown RBP12.83□□□□□ -0.35
TRAF3-205ENST00000558700 MBD5Q9P267 1494 aa12.83□□□□□ -0.36
TRAF3-205ENST00000558700 LRRC9Q6ZRR7 1453 aa12.82□□□□□ -0.36
TRAF3-205ENST00000558700 MAP3K1Q13233 1512 aa12.82□□□□□ -0.36
TRAF3-205ENST00000558700 ARHGEF5Q12774 1597 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms