RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 CFAP44Q96MT7 982 aa9.1□□□□□ -0.95
LRRC28-205ENST00000558248 DOK7Q18PE1 504 aa9.08□□□□□ -0.96
LRRC28-205ENST00000558248 TMEM92Q6UXU6 159 aa9.08□□□□□ -0.96
LRRC28-205ENST00000558248 FAM163AQ96GL9 167 aaPredicted RBP9.08□□□□□ -0.96
LRRC28-205ENST00000558248 C2orf72A6NCS6 295 aa9.07□□□□□ -0.96
LRRC28-205ENST00000558248 RIMBP2O15034 1052 aa9.07□□□□□ -0.96
LRRC28-205ENST00000558248 SLC24A1O60721 1099 aa9.06□□□□□ -0.96
LRRC28-205ENST00000558248 ZNF710Q8N1W2 664 aa9.06□□□□□ -0.96
LRRC28-205ENST00000558248 POTEMA6NI47 508 aa9.04□□□□□ -0.96
LRRC28-205ENST00000558248 KIF3CO14782 793 aa9.04□□□□□ -0.96
LRRC28-205ENST00000558248 GPHNQ9NQX3 736 aaPredicted RBP9.04□□□□□ -0.96
LRRC28-205ENST00000558248 PDE4AP27815 886 aa9.03□□□□□ -0.96
LRRC28-205ENST00000558248 FOXK1P85037 733 aa9□□□□□ -0.97
LRRC28-205ENST00000558248 POTEGQ6S5H5 508 aa9□□□□□ -0.97
LRRC28-205ENST00000558248 ST18O60284 1047 aa8.99□□□□□ -0.97
LRRC28-205ENST00000558248 HOXB3P14651 431 aaPredicted RBP8.99□□□□□ -0.97
LRRC28-205ENST00000558248 CRISPLD2Q9H0B8 497 aa8.99□□□□□ -0.97
LRRC28-205ENST00000558248 ZSWIM6Q9HCJ5 1215 aa8.99□□□□□ -0.97
LRRC28-205ENST00000558248 DSG2Q14126 1118 aa8.97□□□□□ -0.97
LRRC28-205ENST00000558248 PLPP6Q8IY26 295 aa8.97□□□□□ -0.97
LRRC28-205ENST00000558248 DDX27Q96GQ7 796 aaKnown RBP8.97□□□□□ -0.97
LRRC28-205ENST00000558248 LARP6Q9BRS8 491 aaKnown RBP8.97□□□□□ -0.97
LRRC28-205ENST00000558248 PPP1R15BQ5SWA1 713 aa8.96□□□□□ -0.98
LRRC28-205ENST00000558248 NCKAP5LQ9HCH0 1330 aa8.96□□□□□ -0.98
LRRC28-205ENST00000558248 SLC34A2O95436 690 aa8.93□□□□□ -0.98
LRRC28-205ENST00000558248 HOXB1P14653 301 aaPredicted RBP8.93□□□□□ -0.98
LRRC28-205ENST00000558248 EMP3P54852 163 aa8.93□□□□□ -0.98
LRRC28-205ENST00000558248 PLCB2Q00722 1185 aa8.93□□□□□ -0.98
LRRC28-205ENST00000558248 CADPS2Q86UW7 1296 aa8.93□□□□□ -0.98
LRRC28-205ENST00000558248 LCE2DQ5TA82 110 aaPredicted RBP8.92□□□□□ -0.98
LRRC28-205ENST00000558248 PCDH10Q9P2E7 1040 aa8.92□□□□□ -0.98
LRRC28-205ENST00000558248 TBC1D12O60347 775 aa8.91□□□□□ -0.98
LRRC28-205ENST00000558248 MFSD10Q14728 455 aa8.91□□□□□ -0.98
LRRC28-205ENST00000558248 MARVELD3Q96A59 401 aa8.91□□□□□ -0.98
LRRC28-205ENST00000558248 WDR70Q9NW82 654 aa8.9□□□□□ -0.98
LRRC28-205ENST00000558248 PCDHGA4Q9Y5G9 962 aa8.89□□□□□ -0.99
LRRC28-205ENST00000558248 ZNF316A6NFI3 1004 aaPredicted RBP8.88□□□□□ -0.99
LRRC28-205ENST00000558248 ARSIQ5FYB1 569 aa8.88□□□□□ -0.99
LRRC28-205ENST00000558248 GPR153Q6NV75 609 aa8.88□□□□□ -0.99
LRRC28-205ENST00000558248 PTCD2Q8WV60 388 aaKnown RBP8.88□□□□□ -0.99
LRRC28-205ENST00000558248 ERBB3P21860 1342 aa8.86□□□□□ -0.99
LRRC28-205ENST00000558248 TSHZ2Q9NRE2 1034 aa8.86□□□□□ -0.99
LRRC28-205ENST00000558248 UPF1Q92900 1129 aaKnown RBP eCLIP8.85□□□□□ -0.99
LRRC28-205ENST00000558248 FAM205CA6NFA0 338 aa8.84□□□□□ -0.99
LRRC28-205ENST00000558248 NUDT7P0C024 238 aa8.84□□□□□ -0.99
LRRC28-205ENST00000558248 OXER1Q8TDS5 423 aa8.83□□□□□ -1
LRRC28-205ENST00000558248 HAP1P54257 671 aaPredicted RBP8.82□□□□□ -1
LRRC28-205ENST00000558248 MAP3K9P80192 1104 aa8.82□□□□□ -1
LRRC28-205ENST00000558248 KHSRPQ92945 711 aaKnown RBP eCLIP8.82□□□□□ -1
LRRC28-205ENST00000558248 HS3ST6Q96QI5 342 aa8.81□□□□□ -1
LRRC28-205ENST00000558248 PSDA5PKW4 1024 aaPredicted RBP8.8□□□□□ -1
LRRC28-205ENST00000558248 VARS2Q5ST30 1063 aaKnown RBP8.8□□□□□ -1
LRRC28-205ENST00000558248 CAMK2BQ13554 666 aa8.79□□□□□ -1
LRRC28-205ENST00000558248 E2F4Q16254 413 aa8.79□□□□□ -1
LRRC28-205ENST00000558248 CDAN1Q8IWY9 1227 aa8.77□□□□□ -1.01
LRRC28-205ENST00000558248 EMILIN3Q9NT22 766 aa8.77□□□□□ -1.01
LRRC28-205ENST00000558248 LHX6Q9UPM6 363 aa8.77□□□□□ -1.01
LRRC28-205ENST00000558248 EVI5O60447 810 aa8.75□□□□□ -1.01
LRRC28-205ENST00000558248 DPYSL4O14531 572 aa8.74□□□□□ -1.01
LRRC28-205ENST00000558248 PPP4R3BQ5MIZ7 849 aa8.73□□□□□ -1.01
LRRC28-205ENST00000558248 P3H3Q8IVL6 736 aa8.73□□□□□ -1.01
LRRC28-205ENST00000558248 KDM4FA0A1W2PPD8 638 aa8.72□□□□□ -1.01
LRRC28-205ENST00000558248 ZNF687Q8N1G0 1237 aa8.72□□□□□ -1.01
LRRC28-205ENST00000558248 KCNH8Q96L42 1107 aa8.71□□□□□ -1.02
LRRC28-205ENST00000558248 POTEB3A0JP26 581 aa8.7□□□□□ -1.02
LRRC28-205ENST00000558248 SPDYE16A6NNV3 312 aaPredicted RBP8.7□□□□□ -1.02
LRRC28-205ENST00000558248 PBX2P40425 430 aa8.7□□□□□ -1.02
LRRC28-205ENST00000558248 POTEBQ6S5H4 581 aa8.7□□□□□ -1.02
LRRC28-205ENST00000558248 ZNF454Q8N9F8 522 aa8.7□□□□□ -1.02
LRRC28-205ENST00000558248 ANO8Q9HCE9 1232 aaPredicted RBP8.7□□□□□ -1.02
LRRC28-205ENST00000558248 JPH4Q96JJ6 628 aa8.69□□□□□ -1.02
LRRC28-205ENST00000558248 ARIH1Q9Y4X5 557 aaPredicted RBP8.69□□□□□ -1.02
LRRC28-205ENST00000558248 PDIA6Q15084 440 aa8.68□□□□□ -1.02
LRRC28-205ENST00000558248 VSIG10Q8N0Z9 540 aa8.67□□□□□ -1.02
LRRC28-205ENST00000558248 ARHGEF1Q92888 912 aaKnown RBP8.67□□□□□ -1.02
LRRC28-205ENST00000558248 FOSBP53539 338 aa8.66□□□□□ -1.02
LRRC28-205ENST00000558248 KCNV2Q8TDN2 545 aa8.65□□□□□ -1.02
LRRC28-205ENST00000558248 FBXW7Q969H0 707 aa8.64□□□□□ -1.03
LRRC28-205ENST00000558248 ZDHHC16Q969W1 377 aa8.64□□□□□ -1.03
LRRC28-205ENST00000558248 ARHGAP33O14559 1287 aa8.63□□□□□ -1.03
LRRC28-205ENST00000558248 PHF14O94880 888 aa8.63□□□□□ -1.03
LRRC28-205ENST00000558248 TYW1BQ6NUM6 668 aa8.63□□□□□ -1.03
LRRC28-205ENST00000558248 EPAS1Q99814 870 aa8.63□□□□□ -1.03
LRRC28-205ENST00000558248 KRTAP3-3Q9BYR6 98 aa8.63□□□□□ -1.03
LRRC28-205ENST00000558248 KRTAP3-2Q9BYR7 98 aa8.63□□□□□ -1.03
LRRC28-205ENST00000558248 PTGER2P43116 358 aa8.62□□□□□ -1.03
LRRC28-205ENST00000558248 PTPREP23469 700 aa8.61□□□□□ -1.03
LRRC28-205ENST00000558248 DDX12PQ92771 950 aa8.61□□□□□ -1.03
LRRC28-205ENST00000558248 KCNK17Q96T54 332 aa8.61□□□□□ -1.03
LRRC28-205ENST00000558248 BCL2L12Q9HB09 334 aa8.61□□□□□ -1.03
LRRC28-205ENST00000558248 LSM11P83369 360 aaKnown RBP eCLIP8.6□□□□□ -1.03
LRRC28-205ENST00000558248 AXIN2Q9Y2T1 843 aa8.6□□□□□ -1.03
LRRC28-205ENST00000558248 PCDHGA10Q9Y5H3 936 aa8.6□□□□□ -1.03
LRRC28-205ENST00000558248 NBR1Q14596 966 aa8.59□□□□□ -1.03
LRRC28-205ENST00000558248 ANKRD13DQ6ZTN6 518 aa8.59□□□□□ -1.03
LRRC28-205ENST00000558248 KDM2AQ9Y2K7 1162 aa8.59□□□□□ -1.03
LRRC28-205ENST00000558248 GRXCR2A6NFK2 248 aa8.57□□□□□ -1.04
LRRC28-205ENST00000558248 ADAM33Q9BZ11 813 aa8.57□□□□□ -1.04
LRRC28-205ENST00000558248 PSEN2P49810 448 aa8.56□□□□□ -1.04
LRRC28-205ENST00000558248 MAP3K7O43318 606 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms