RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MFRPQ9BY79 579 aa8.98□□□□□ -0.97
VPS13C-205ENST00000558088 ZSWIM6Q9HCJ5 1215 aa8.98□□□□□ -0.97
VPS13C-205ENST00000558088 ERBB3P21860 1342 aa8.98□□□□□ -0.97
VPS13C-205ENST00000558088 TMEM92Q6UXU6 159 aa8.97□□□□□ -0.97
VPS13C-205ENST00000558088 SPNS2Q8IVW8 549 aa8.95□□□□□ -0.98
VPS13C-205ENST00000558088 POTEB3A0JP26 581 aa8.92□□□□□ -0.98
VPS13C-205ENST00000558088 POTEBQ6S5H4 581 aa8.92□□□□□ -0.98
VPS13C-205ENST00000558088 MMRN1Q13201 1228 aa8.91□□□□□ -0.98
VPS13C-205ENST00000558088 VARS2Q5ST30 1063 aaKnown RBP8.9□□□□□ -0.98
VPS13C-205ENST00000558088 TMC2Q8TDI7 906 aa8.9□□□□□ -0.98
VPS13C-205ENST00000558088 KRTAP3-3Q9BYR6 98 aa8.89□□□□□ -0.99
VPS13C-205ENST00000558088 KRTAP3-2Q9BYR7 98 aa8.89□□□□□ -0.99
VPS13C-205ENST00000558088 GPR153Q6NV75 609 aa8.88□□□□□ -0.99
VPS13C-205ENST00000558088 C2orf72A6NCS6 295 aa8.87□□□□□ -0.99
VPS13C-205ENST00000558088 HS6ST3Q8IZP7 471 aa8.87□□□□□ -0.99
VPS13C-205ENST00000558088 ARSIQ5FYB1 569 aa8.86□□□□□ -0.99
VPS13C-205ENST00000558088 CHGAP10645 457 aaKnown RBP8.84□□□□□ -0.99
VPS13C-205ENST00000558088 KIF3CO14782 793 aa8.83□□□□□ -1
VPS13C-205ENST00000558088 ZNF687Q8N1G0 1237 aa8.82□□□□□ -1
VPS13C-205ENST00000558088 RYDENQ9NUL5 291 aaKnown RBP8.82□□□□□ -1
VPS13C-205ENST00000558088 ZNF316A6NFI3 1004 aaPredicted RBP8.8□□□□□ -1
VPS13C-205ENST00000558088 PPP1R37O75864 691 aa8.8□□□□□ -1
VPS13C-205ENST00000558088 SLC34A2O95436 690 aa8.78□□□□□ -1
VPS13C-205ENST00000558088 KHSRPQ92945 711 aaKnown RBP eCLIP8.78□□□□□ -1
VPS13C-205ENST00000558088 NUDT7P0C024 238 aa8.77□□□□□ -1.01
VPS13C-205ENST00000558088 PCDHGA4Q9Y5G9 962 aa8.77□□□□□ -1.01
VPS13C-205ENST00000558088 PTGER2P43116 358 aa8.75□□□□□ -1.01
VPS13C-205ENST00000558088 PBX2P40425 430 aa8.73□□□□□ -1.01
VPS13C-205ENST00000558088 RNF166Q96A37 237 aaPredicted RBP8.73□□□□□ -1.01
VPS13C-205ENST00000558088 MYT1LQ9UL68 1186 aa8.73□□□□□ -1.01
VPS13C-205ENST00000558088 PSDA5PKW4 1024 aaPredicted RBP8.72□□□□□ -1.01
VPS13C-205ENST00000558088 ANKRD13DQ6ZTN6 518 aa8.72□□□□□ -1.01
VPS13C-205ENST00000558088 DNAJC5Q9H3Z4 198 aa8.72□□□□□ -1.01
VPS13C-205ENST00000558088 GPHNQ9NQX3 736 aaPredicted RBP8.72□□□□□ -1.01
VPS13C-205ENST00000558088 TBC1D12O60347 775 aa8.71□□□□□ -1.02
VPS13C-205ENST00000558088 DCAF8L2P0C7V8 631 aa8.71□□□□□ -1.02
VPS13C-205ENST00000558088 FOXK1P85037 733 aa8.71□□□□□ -1.02
VPS13C-205ENST00000558088 PLPP6Q8IY26 295 aa8.71□□□□□ -1.02
VPS13C-205ENST00000558088 LHX6Q9UPM6 363 aa8.71□□□□□ -1.02
VPS13C-205ENST00000558088 LSM11P83369 360 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS13C-205ENST00000558088 NKX1-1Q15270 411 aaPredicted RBP8.68□□□□□ -1.02
VPS13C-205ENST00000558088 PTCD2Q8WV60 388 aaKnown RBP8.68□□□□□ -1.02
VPS13C-205ENST00000558088 DSG2Q14126 1118 aa8.67□□□□□ -1.02
VPS13C-205ENST00000558088 KCNH8Q96L42 1107 aa8.63□□□□□ -1.03
VPS13C-205ENST00000558088 ARHGAP33O14559 1287 aa8.62□□□□□ -1.03
VPS13C-205ENST00000558088 PPP4R3BQ5MIZ7 849 aa8.62□□□□□ -1.03
VPS13C-205ENST00000558088 AXIN2Q9Y2T1 843 aa8.62□□□□□ -1.03
VPS13C-205ENST00000558088 PDE4AP27815 886 aa8.61□□□□□ -1.03
VPS13C-205ENST00000558088 PPP1R15BQ5SWA1 713 aa8.6□□□□□ -1.03
VPS13C-205ENST00000558088 CRISPLD2Q9H0B8 497 aa8.6□□□□□ -1.03
VPS13C-205ENST00000558088 UPF1Q92900 1129 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS13C-205ENST00000558088 KDM4FA0A1W2PPD8 638 aa8.58□□□□□ -1.04
VPS13C-205ENST00000558088 GTPBP6O43824 516 aaPredicted RBP8.57□□□□□ -1.04
VPS13C-205ENST00000558088 OXER1Q8TDS5 423 aa8.57□□□□□ -1.04
VPS13C-205ENST00000558088 ADGRD1Q6QNK2 874 aa8.56□□□□□ -1.04
VPS13C-205ENST00000558088 POTEEQ6S8J3 1075 aa8.56□□□□□ -1.04
VPS13C-205ENST00000558088 STAC3Q96MF2 364 aa8.56□□□□□ -1.04
VPS13C-205ENST00000558088 TK2O00142 265 aa8.54□□□□□ -1.04
VPS13C-205ENST00000558088 DDX27Q96GQ7 796 aaKnown RBP8.54□□□□□ -1.04
VPS13C-205ENST00000558088 LARP6Q9BRS8 491 aaKnown RBP8.54□□□□□ -1.04
VPS13C-205ENST00000558088 NCKAP5LQ9HCH0 1330 aa8.54□□□□□ -1.04
VPS13C-205ENST00000558088 PSEN2P49810 448 aa8.53□□□□□ -1.04
VPS13C-205ENST00000558088 ZNF454Q8N9F8 522 aa8.53□□□□□ -1.04
VPS13C-205ENST00000558088 KCNK17Q96T54 332 aa8.53□□□□□ -1.04
VPS13C-205ENST00000558088 DMRTA1Q5VZB9 504 aa8.5□□□□□ -1.05
VPS13C-205ENST00000558088 HCSTQ9UBK5 93 aa8.5□□□□□ -1.05
VPS13C-205ENST00000558088 MAP3K9P80192 1104 aa8.49□□□□□ -1.05
VPS13C-205ENST00000558088 EVI5O60447 810 aa8.48□□□□□ -1.05
VPS13C-205ENST00000558088 PTPREP23469 700 aa8.47□□□□□ -1.05
VPS13C-205ENST00000558088 FOSBP53539 338 aa8.47□□□□□ -1.05
VPS13C-205ENST00000558088 MFSD10Q14728 455 aa8.47□□□□□ -1.05
VPS13C-205ENST00000558088 BCL2L12Q9HB09 334 aa8.47□□□□□ -1.05
VPS13C-205ENST00000558088 JPH4Q96JJ6 628 aa8.46□□□□□ -1.06
VPS13C-205ENST00000558088 HRO43593 1189 aa8.45□□□□□ -1.06
VPS13C-205ENST00000558088 ZDHHC16Q969W1 377 aa8.44□□□□□ -1.06
VPS13C-205ENST00000558088 ANO8Q9HCE9 1232 aaPredicted RBP8.44□□□□□ -1.06
VPS13C-205ENST00000558088 KCTD12Q96CX2 325 aaKnown RBP8.43□□□□□ -1.06
VPS13C-205ENST00000558088 BBXQ8WY36 941 aaPredicted RBP8.42□□□□□ -1.06
VPS13C-205ENST00000558088 VPS9D1Q9Y2B5 631 aa8.42□□□□□ -1.06
VPS13C-205ENST00000558088 GOLGA8CPA6NN73 597 aa8.41□□□□□ -1.06
VPS13C-205ENST00000558088 SLC4A5Q9BY07 1137 aa8.41□□□□□ -1.06
VPS13C-205ENST00000558088 PLA2G2EQ9NZK7 142 aa8.41□□□□□ -1.06
VPS13C-205ENST00000558088 AMER1Q5JTC6 1135 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-205ENST00000558088 CADPS2Q86UW7 1296 aa8.39□□□□□ -1.07
VPS13C-205ENST00000558088 NBPF3Q9H094 633 aa8.39□□□□□ -1.07
VPS13C-205ENST00000558088 EMILIN3Q9NT22 766 aa8.39□□□□□ -1.07
VPS13C-205ENST00000558088 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-205ENST00000558088 MRPL50Q8N5N7 158 aaKnown RBP8.38□□□□□ -1.07
VPS13C-205ENST00000558088 FBXW7Q969H0 707 aa8.38□□□□□ -1.07
VPS13C-205ENST00000558088 ADAM33Q9BZ11 813 aa8.38□□□□□ -1.07
VPS13C-205ENST00000558088 ZBED2Q9BTP6 218 aa8.37□□□□□ -1.07
VPS13C-205ENST00000558088 TYW1BQ6NUM6 668 aa8.36□□□□□ -1.07
VPS13C-205ENST00000558088 SPRYD3Q8NCJ5 442 aa8.36□□□□□ -1.07
VPS13C-205ENST00000558088 PHF14O94880 888 aa8.35□□□□□ -1.07
VPS13C-205ENST00000558088 PCDHGA10Q9Y5H3 936 aa8.35□□□□□ -1.07
VPS13C-205ENST00000558088 PPP1R3GB7ZBB8 358 aa8.34□□□□□ -1.07
VPS13C-205ENST00000558088 PTPN5P54829 565 aa8.34□□□□□ -1.07
VPS13C-205ENST00000558088 DPYSL4O14531 572 aa8.33□□□□□ -1.08
VPS13C-205ENST00000558088 CAMK2BQ13554 666 aa8.33□□□□□ -1.08
VPS13C-205ENST00000558088 WNT2BQ93097 391 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms