RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 PLCH2O75038 1416 aa25.61■■□□□ 1.69
SNX1-203ENST00000558040 ARHGAP5Q13017 1502 aa25.6■■□□□ 1.69
SNX1-203ENST00000558040 GLI2P10070 1586 aa25.6■■□□□ 1.69
SNX1-203ENST00000558040 CDC42BPBQ9Y5S2 1711 aa25.59■■□□□ 1.69
SNX1-203ENST00000558040 DIP2BQ9P265 1576 aa25.56■■□□□ 1.68
SNX1-203ENST00000558040 CAMSAP2Q08AD1 1489 aa25.56■■□□□ 1.68
SNX1-203ENST00000558040 ZNF777Q9ULD5 760 aaPredicted RBP25.54■■□□□ 1.68
SNX1-203ENST00000558040 CD109Q6YHK3 1445 aa25.54■■□□□ 1.68
SNX1-203ENST00000558040 EFCAB2Q5VUJ9 269 aa25.53■■□□□ 1.68
SNX1-203ENST00000558040 PLEKHH2Q8IVE3 1493 aa25.51■■□□□ 1.67
SNX1-203ENST00000558040 MAP3K4Q9Y6R4 1608 aa25.51■■□□□ 1.67
SNX1-203ENST00000558040 FAM69CQ0P6D2 419 aa25.5■■□□□ 1.67
SNX1-203ENST00000558040 SAMD9LQ8IVG5 1584 aa25.49■■□□□ 1.67
SNX1-203ENST00000558040 ZNF644Q9H582 1327 aaPredicted RBP25.49■■□□□ 1.67
SNX1-203ENST00000558040 FANCAO15360 1455 aa25.48■■□□□ 1.67
SNX1-203ENST00000558040 CFAP74Q9C0B2 1584 aa25.48■■□□□ 1.67
SNX1-203ENST00000558040 ITGAEP38570 1179 aa25.46■■□□□ 1.67
SNX1-203ENST00000558040 DNMT1P26358 1616 aaKnown RBP25.45■■□□□ 1.66
SNX1-203ENST00000558040 KIAA1107Q9UPP5 1409 aa25.44■■□□□ 1.66
SNX1-203ENST00000558040 DAPK1P53355 1430 aa25.42■■□□□ 1.66
SNX1-203ENST00000558040 ARHGEF5Q12774 1597 aa25.42■■□□□ 1.66
SNX1-203ENST00000558040 ABCC1P33527 1531 aa25.42■■□□□ 1.66
SNX1-203ENST00000558040 KIF13AQ9H1H9 1805 aa25.42■■□□□ 1.66
SNX1-203ENST00000558040 SYCP2Q9BX26 1530 aa25.41■■□□□ 1.66
SNX1-203ENST00000558040 RSPH4AQ5TD94 716 aa25.4■■□□□ 1.66
SNX1-203ENST00000558040 NEO1Q92859 1461 aa25.4■■□□□ 1.66
SNX1-203ENST00000558040 ABCC5O15440 1437 aa25.38■■□□□ 1.65
SNX1-203ENST00000558040 MBD5Q9P267 1494 aa25.38■■□□□ 1.65
SNX1-203ENST00000558040 AKNAQ7Z591 1439 aa25.37■■□□□ 1.65
SNX1-203ENST00000558040 CCDC141Q6ZP82 1450 aa25.37■■□□□ 1.65
SNX1-203ENST00000558040 TEX14Q8IWB6 1497 aa25.37■■□□□ 1.65
SNX1-203ENST00000558040 CROCC2H7BZ55 1655 aa25.36■■□□□ 1.65
SNX1-203ENST00000558040 ADGRL1O94910 1474 aa25.36■■□□□ 1.65
SNX1-203ENST00000558040 HNRNPMP52272 730 aaKnown RBP eCLIP25.36■■□□□ 1.65
SNX1-203ENST00000558040 SHANK2Q9UPX8 1470 aa25.35■■□□□ 1.65
SNX1-203ENST00000558040 PTPRKQ15262 1439 aa25.34■■□□□ 1.65
SNX1-203ENST00000558040 ARHGEF12Q9NZN5 1544 aa25.32■■□□□ 1.64
SNX1-203ENST00000558040 SCAPERQ9BY12 1400 aa25.31■■□□□ 1.64
SNX1-203ENST00000558040 TSPY4P0CV99 314 aa25.31■■□□□ 1.64
SNX1-203ENST00000558040 TSPY10P0CW01 314 aa25.31■■□□□ 1.64
SNX1-203ENST00000558040 TSPOAP1O95153 1857 aa25.3■■□□□ 1.64
SNX1-203ENST00000558040 PPRC1Q5VV67 1664 aaKnown RBP25.3■■□□□ 1.64
SNX1-203ENST00000558040 ROCK1Q13464 1354 aa25.3■■□□□ 1.64
SNX1-203ENST00000558040 C9orf84Q5VXU9 1444 aa25.29■■□□□ 1.64
SNX1-203ENST00000558040 ADGBQ8N7X0 1667 aa25.28■■□□□ 1.64
SNX1-203ENST00000558040 CHIC2Q9UKJ5 165 aa25.27■■□□□ 1.64
SNX1-203ENST00000558040 TRAPPC8Q9Y2L5 1435 aa25.27■■□□□ 1.64
SNX1-203ENST00000558040 MAST1Q9Y2H9 1570 aa25.27■■□□□ 1.64
SNX1-203ENST00000558040 TRHP20396 242 aaPredicted RBP25.26■■□□□ 1.63
SNX1-203ENST00000558040 ADGRL2O95490 1459 aa25.26■■□□□ 1.63
SNX1-203ENST00000558040 HFM1A2PYH4 1435 aa25.25■■□□□ 1.63
SNX1-203ENST00000558040 ZNF518AQ6AHZ1 1483 aa25.24■■□□□ 1.63
SNX1-203ENST00000558040 ANKRD30AQ9BXX3 1397 aa25.24■■□□□ 1.63
SNX1-203ENST00000558040 DENND4BO75064 1496 aaPredicted RBP25.22■■□□□ 1.63
SNX1-203ENST00000558040 POGZQ7Z3K3 1410 aa25.22■■□□□ 1.63
SNX1-203ENST00000558040 SETD5Q9C0A6 1442 aa25.22■■□□□ 1.63
SNX1-203ENST00000558040 NCOA1Q15788 1441 aa25.2■■□□□ 1.63
SNX1-203ENST00000558040 GCC2Q8IWJ2 1684 aa25.2■■□□□ 1.63
SNX1-203ENST00000558040 SPAG9O60271 1321 aaKnown RBP25.19■■□□□ 1.62
SNX1-203ENST00000558040 AFAP1Q8N556 730 aa25.19■■□□□ 1.62
SNX1-203ENST00000558040 RRP7BPQ9NSQ0 103 aa25.19■■□□□ 1.62
SNX1-203ENST00000558040 RTEL1-TNFRSF6BF6WH68 1400 aa25.19■■□□□ 1.62
SNX1-203ENST00000558040 NAIPQ13075 1403 aa25.19■■□□□ 1.62
SNX1-203ENST00000558040 PLXNC1O60486 1568 aa25.17■■□□□ 1.62
SNX1-203ENST00000558040 KDM5CP41229 1560 aa25.17■■□□□ 1.62
SNX1-203ENST00000558040 ZFYVE16Q7Z3T8 1539 aa25.15■■□□□ 1.62
SNX1-203ENST00000558040 INO80Q9ULG1 1556 aaPredicted RBP25.14■■□□□ 1.62
SNX1-203ENST00000558040 RAB3GAP2Q9H2M9 1393 aa25.14■■□□□ 1.61
SNX1-203ENST00000558040 ATP7AQ04656 1500 aa25.13■■□□□ 1.61
SNX1-203ENST00000558040 RICTORQ6R327 1708 aa25.13■■□□□ 1.61
SNX1-203ENST00000558040 KIF15Q9NS87 1388 aa25.13■■□□□ 1.61
SNX1-203ENST00000558040 HRCP23327 699 aa25.12■■□□□ 1.61
SNX1-203ENST00000558040 HECW2Q9P2P5 1572 aa25.11■■□□□ 1.61
SNX1-203ENST00000558040 MLH3Q9UHC1 1453 aa25.1■■□□□ 1.61
SNX1-203ENST00000558040 MYT1LQ9UL68 1186 aa25.1■■□□□ 1.61
SNX1-203ENST00000558040 RAPGEF3O95398 923 aa25.09■■□□□ 1.61
SNX1-203ENST00000558040 ACIN1Q9UKV3 1341 aaKnown RBP25.09■■□□□ 1.61
SNX1-203ENST00000558040 FRMPD1Q5SYB0 1578 aa25.08■■□□□ 1.61
SNX1-203ENST00000558040 ZMYM4Q5VZL5 1548 aa25.07■■□□□ 1.6
SNX1-203ENST00000558040 DUOX2Q9NRD8 1548 aa25.07■■□□□ 1.6
SNX1-203ENST00000558040 ANKRD50Q9ULJ7 1429 aa25.06■■□□□ 1.6
SNX1-203ENST00000558040 KIDINS220Q9ULH0 1771 aa25.05■■□□□ 1.6
SNX1-203ENST00000558040 MAGI2Q86UL8 1455 aa25.02■■□□□ 1.6
SNX1-203ENST00000558040 ERBINQ96RT1 1412 aa25.02■■□□□ 1.6
SNX1-203ENST00000558040 KDM6BO15054 1643 aa25.01■■□□□ 1.59
SNX1-203ENST00000558040 COL17A1Q9UMD9 1497 aaPredicted RBP24.99■■□□□ 1.59
SNX1-203ENST00000558040 ABCA6Q8N139 1617 aa24.97■■□□□ 1.59
SNX1-203ENST00000558040 DHX29Q7Z478 1369 aaKnown RBP24.95■■□□□ 1.59
SNX1-203ENST00000558040 DIP2CQ9Y2E4 1556 aa24.95■■□□□ 1.58
SNX1-203ENST00000558040 A2MP01023 1474 aa24.95■■□□□ 1.58
SNX1-203ENST00000558040 CCER1Q8TC90 406 aaPredicted RBP24.92■■□□□ 1.58
SNX1-203ENST00000558040 TRIM52Q96A61 297 aa24.92■■□□□ 1.58
SNX1-203ENST00000558040 EIF2AK4Q9P2K8 1649 aaKnown RBP24.92■■□□□ 1.58
SNX1-203ENST00000558040 YEATS2Q9ULM3 1422 aa24.91■■□□□ 1.58
SNX1-203ENST00000558040 DHX57Q6P158 1386 aaKnown RBP24.9■■□□□ 1.58
SNX1-203ENST00000558040 ARHGEF40Q8TER5 1519 aa24.88■■□□□ 1.57
SNX1-203ENST00000558040 UNC13BO14795 1591 aa24.88■■□□□ 1.57
SNX1-203ENST00000558040 ATP10AO60312 1499 aa24.87■■□□□ 1.57
SNX1-203ENST00000558040 REREQ9P2R6 1566 aa24.85■■□□□ 1.57
SNX1-203ENST00000558040 KDM5DQ9BY66 1539 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms