RNA–Protein interactions for RNA: ENST00000557768.1

HNRNPC-233, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), human

TSL 3

Gene HNRNPC, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPC-233	ENST00000557768	SHROOM4	Q9ULL8	1493 aa		11.12	□□□□□ -0.63
HNRNPC-233	ENST00000557768	SLAIN1	Q8ND83	568 aa		11.11	□□□□□ -0.63
HNRNPC-233	ENST00000557768	MICALL2	Q8IY33	904 aa		11.1	□□□□□ -0.63
HNRNPC-233	ENST00000557768	CECR2	Q9BXF3	1484 aa		11.1	□□□□□ -0.63
HNRNPC-233	ENST00000557768	EIF4G1	Q04637	1599 aa	Known RBP	11.08	□□□□□ -0.64
HNRNPC-233	ENST00000557768	PPP1R37	O75864	691 aa		11.08	□□□□□ -0.64
HNRNPC-233	ENST00000557768	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.07	□□□□□ -0.64
HNRNPC-233	ENST00000557768	BBX	Q8WY36	941 aa	Predicted RBP	11.06	□□□□□ -0.64
HNRNPC-233	ENST00000557768	RYDEN	Q9NUL5	291 aa	Known RBP	11.05	□□□□□ -0.64
HNRNPC-233	ENST00000557768	GTPBP6	O43824	516 aa	Predicted RBP	11.03	□□□□□ -0.64
HNRNPC-233	ENST00000557768	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11	□□□□□ -0.65
HNRNPC-233	ENST00000557768	TMEM92	Q6UXU6	159 aa		10.98	□□□□□ -0.65
HNRNPC-233	ENST00000557768	SPRYD3	Q8NCJ5	442 aa		10.94	□□□□□ -0.66
HNRNPC-233	ENST00000557768	FAM163A	Q96GL9	167 aa	Predicted RBP	10.94	□□□□□ -0.66
HNRNPC-233	ENST00000557768	CFAP44	Q96MT7	982 aa		10.94	□□□□□ -0.66
HNRNPC-233	ENST00000557768	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.93	□□□□□ -0.66
HNRNPC-233	ENST00000557768	C2orf72	A6NCS6	295 aa		10.9	□□□□□ -0.66
HNRNPC-233	ENST00000557768	SNPH	O15079	494 aa		10.9	□□□□□ -0.66
HNRNPC-233	ENST00000557768	TMC2	Q8TDI7	906 aa		10.9	□□□□□ -0.66
HNRNPC-233	ENST00000557768	KIF3C	O14782	793 aa		10.85	□□□□□ -0.67
HNRNPC-233	ENST00000557768	ST18	O60284	1047 aa		10.83	□□□□□ -0.68
HNRNPC-233	ENST00000557768	PLCB2	Q00722	1185 aa		10.83	□□□□□ -0.68
HNRNPC-233	ENST00000557768	HOXB3	P14651	431 aa	Predicted RBP	10.82	□□□□□ -0.68
HNRNPC-233	ENST00000557768	DOK7	Q18PE1	504 aa		10.81	□□□□□ -0.68
HNRNPC-233	ENST00000557768	LCE2D	Q5TA82	110 aa	Predicted RBP	10.81	□□□□□ -0.68
HNRNPC-233	ENST00000557768	ZNF710	Q8N1W2	664 aa		10.81	□□□□□ -0.68
HNRNPC-233	ENST00000557768	GPHN	Q9NQX3	736 aa	Predicted RBP	10.81	□□□□□ -0.68
HNRNPC-233	ENST00000557768	CADPS2	Q86UW7	1296 aa		10.8	□□□□□ -0.68
HNRNPC-233	ENST00000557768	PDE4A	P27815	886 aa		10.78	□□□□□ -0.68
HNRNPC-233	ENST00000557768	DSG2	Q14126	1118 aa		10.78	□□□□□ -0.68
HNRNPC-233	ENST00000557768	CRISPLD2	Q9H0B8	497 aa		10.78	□□□□□ -0.68
HNRNPC-233	ENST00000557768	NCKAP5L	Q9HCH0	1330 aa		10.78	□□□□□ -0.68
HNRNPC-233	ENST00000557768	RIMBP2	O15034	1052 aa		10.77	□□□□□ -0.69
HNRNPC-233	ENST00000557768	LARP6	Q9BRS8	491 aa	Known RBP	10.77	□□□□□ -0.69
HNRNPC-233	ENST00000557768	FOXK1	P85037	733 aa		10.76	□□□□□ -0.69
HNRNPC-233	ENST00000557768	PLPP6	Q8IY26	295 aa		10.76	□□□□□ -0.69
HNRNPC-233	ENST00000557768	MARVELD3	Q96A59	401 aa		10.74	□□□□□ -0.69
HNRNPC-233	ENST00000557768	TSHZ2	Q9NRE2	1034 aa		10.74	□□□□□ -0.69
HNRNPC-233	ENST00000557768	POTEM	A6NI47	508 aa		10.73	□□□□□ -0.69
HNRNPC-233	ENST00000557768	POTEG	Q6S5H5	508 aa		10.73	□□□□□ -0.69
HNRNPC-233	ENST00000557768	PPP1R15B	Q5SWA1	713 aa		10.72	□□□□□ -0.69
HNRNPC-233	ENST00000557768	HAP1	P54257	671 aa	Predicted RBP	10.71	□□□□□ -0.69
HNRNPC-233	ENST00000557768	DDX27	Q96GQ7	796 aa	Known RBP	10.71	□□□□□ -0.69
HNRNPC-233	ENST00000557768	ARSI	Q5FYB1	569 aa		10.7	□□□□□ -0.7
HNRNPC-233	ENST00000557768	EMP3	P54852	163 aa		10.69	□□□□□ -0.7
HNRNPC-233	ENST00000557768	HOXB1	P14653	301 aa	Predicted RBP	10.68	□□□□□ -0.7
HNRNPC-233	ENST00000557768	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.68	□□□□□ -0.7	1e-9	■■□□□ 12.1
HNRNPC-233	ENST00000557768	ZSWIM6	Q9HCJ5	1215 aa		10.68	□□□□□ -0.7
HNRNPC-233	ENST00000557768	GPR153	Q6NV75	609 aa		10.67	□□□□□ -0.7
HNRNPC-233	ENST00000557768	SLC34A2	O95436	690 aa		10.66	□□□□□ -0.7
HNRNPC-233	ENST00000557768	MFSD10	Q14728	455 aa		10.66	□□□□□ -0.7
HNRNPC-233	ENST00000557768	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
HNRNPC-233	ENST00000557768	PCDHGA4	Q9Y5G9	962 aa		10.66	□□□□□ -0.7
HNRNPC-233	ENST00000557768	NCAPD3	P42695	1498 aa		10.64	□□□□□ -0.71
HNRNPC-233	ENST00000557768	CUX2	O14529	1486 aa		10.63	□□□□□ -0.71
HNRNPC-233	ENST00000557768	ERCC6	Q03468	1493 aa		10.63	□□□□□ -0.71
HNRNPC-233	ENST00000557768	FAM205C	A6NFA0	338 aa		10.63	□□□□□ -0.71
HNRNPC-233	ENST00000557768	NUDT7	P0C024	238 aa		10.62	□□□□□ -0.71
HNRNPC-233	ENST00000557768	PTCD2	Q8WV60	388 aa	Known RBP	10.62	□□□□□ -0.71
HNRNPC-233	ENST00000557768	SMARCA4	P51532	1647 aa		10.62	□□□□□ -0.71
HNRNPC-233	ENST00000557768	ERBB3	P21860	1342 aa		10.61	□□□□□ -0.71
HNRNPC-233	ENST00000557768	WDR70	Q9NW82	654 aa		10.61	□□□□□ -0.71
HNRNPC-233	ENST00000557768	ATAD2B	Q9ULI0	1458 aa		10.61	□□□□□ -0.71
HNRNPC-233	ENST00000557768	TBC1D12	O60347	775 aa		10.6	□□□□□ -0.71
HNRNPC-233	ENST00000557768	SMARCA2	P51531	1590 aa		10.58	□□□□□ -0.72
HNRNPC-233	ENST00000557768	OXER1	Q8TDS5	423 aa		10.58	□□□□□ -0.72
HNRNPC-233	ENST00000557768	HS3ST6	Q96QI5	342 aa		10.58	□□□□□ -0.72
HNRNPC-233	ENST00000557768	HMGXB3	Q12766	1538 aa		10.58	□□□□□ -0.72
HNRNPC-233	ENST00000557768	EMILIN3	Q9NT22	766 aa		10.57	□□□□□ -0.72
HNRNPC-233	ENST00000557768	NES	P48681	1621 aa		10.57	□□□□□ -0.72
HNRNPC-233	ENST00000557768	POTEB3	A0JP26	581 aa		10.56	□□□□□ -0.72
HNRNPC-233	ENST00000557768	VARS2	Q5ST30	1063 aa	Known RBP	10.56	□□□□□ -0.72
HNRNPC-233	ENST00000557768	POTEB	Q6S5H4	581 aa		10.56	□□□□□ -0.72
HNRNPC-233	ENST00000557768	MAP3K9	P80192	1104 aa		10.55	□□□□□ -0.72
HNRNPC-233	ENST00000557768	BCAN	Q96GW7	911 aa		10.55	□□□□□ -0.72
HNRNPC-233	ENST00000557768	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.54	□□□□□ -0.72
HNRNPC-233	ENST00000557768	CDAN1	Q8IWY9	1227 aa		10.54	□□□□□ -0.72
HNRNPC-233	ENST00000557768	LHX6	Q9UPM6	363 aa		10.54	□□□□□ -0.72
HNRNPC-233	ENST00000557768	CAMK2B	Q13554	666 aa		10.53	□□□□□ -0.72
HNRNPC-233	ENST00000557768	KDM2A	Q9Y2K7	1162 aa		10.53	□□□□□ -0.72
HNRNPC-233	ENST00000557768	VSIG10	Q8N0Z9	540 aa		10.52	□□□□□ -0.73
HNRNPC-233	ENST00000557768	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.52	□□□□□ -0.73
HNRNPC-233	ENST00000557768	BAZ1B	Q9UIG0	1483 aa	Known RBP	10.51	□□□□□ -0.73
HNRNPC-233	ENST00000557768	E2F4	Q16254	413 aa		10.51	□□□□□ -0.73
HNRNPC-233	ENST00000557768	KDM4F	A0A1W2PPD8	638 aa		10.5	□□□□□ -0.73
HNRNPC-233	ENST00000557768	DPYSL4	O14531	572 aa		10.5	□□□□□ -0.73
HNRNPC-233	ENST00000557768	THOC2	Q8NI27	1593 aa	Known RBP	10.5	□□□□□ -0.73
HNRNPC-233	ENST00000557768	KIF21A	Q7Z4S6	1674 aa		10.5	□□□□□ -0.73
HNRNPC-233	ENST00000557768	EVI5	O60447	810 aa		10.49	□□□□□ -0.73
HNRNPC-233	ENST00000557768	PEG3	Q9GZU2	1588 aa		10.48	□□□□□ -0.73
HNRNPC-233	ENST00000557768	PCDH10	Q9P2E7	1040 aa		10.48	□□□□□ -0.73
HNRNPC-233	ENST00000557768	LAMC3	Q9Y6N6	1575 aa		10.46	□□□□□ -0.74
HNRNPC-233	ENST00000557768	MROH2B	Q7Z745	1585 aa		10.45	□□□□□ -0.74
HNRNPC-233	ENST00000557768	PRKCSH	P14314	528 aa	Predicted RBP	10.44	□□□□□ -0.74
HNRNPC-233	ENST00000557768	ZNF687	Q8N1G0	1237 aa		10.44	□□□□□ -0.74
HNRNPC-233	ENST00000557768	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.43	□□□□□ -0.74
HNRNPC-233	ENST00000557768	PSD	A5PKW4	1024 aa	Predicted RBP	10.42	□□□□□ -0.74
HNRNPC-233	ENST00000557768	ZNF454	Q8N9F8	522 aa		10.42	□□□□□ -0.74
HNRNPC-233	ENST00000557768	PPP4R3B	Q5MIZ7	849 aa		10.41	□□□□□ -0.74
HNRNPC-233	ENST00000557768	KCNV2	Q8TDN2	545 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms