RNA–Protein interactions for RNA: ENST00000557654.5

GPHN-215, Transcript of gephyrin, humanhuman

TSL 4

Gene GPHN, Length 503 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-215ENST00000557654 PLCB2Q00722 1185 aa13.44□□□□□ -0.26
GPHN-215ENST00000557654 C2orf72A6NCS6 295 aa13.43□□□□□ -0.26
GPHN-215ENST00000557654 KIF3CO14782 793 aa13.4□□□□□ -0.26
GPHN-215ENST00000557654 TSHZ2Q9NRE2 1034 aa13.4□□□□□ -0.26
GPHN-215ENST00000557654 NCKAP5LQ9HCH0 1330 aa13.39□□□□□ -0.27
GPHN-215ENST00000557654 TMC2Q8TDI7 906 aa13.39□□□□□ -0.27
GPHN-215ENST00000557654 CRISPLD2Q9H0B8 497 aa13.36□□□□□ -0.27
GPHN-215ENST00000557654 GPHNQ9NQX3 736 aaPredicted RBP13.34□□□□□ -0.27
GPHN-215ENST00000557654 DSG2Q14126 1118 aa13.32□□□□□ -0.28
GPHN-215ENST00000557654 LARP6Q9BRS8 491 aaKnown RBP13.32□□□□□ -0.28
GPHN-215ENST00000557654 PDE4AP27815 886 aa13.3□□□□□ -0.28
GPHN-215ENST00000557654 HOXB3P14651 431 aaPredicted RBP13.29□□□□□ -0.28
GPHN-215ENST00000557654 HAP1P54257 671 aaPredicted RBP13.29□□□□□ -0.28
GPHN-215ENST00000557654 FAM163AQ96GL9 167 aaPredicted RBP13.28□□□□□ -0.28
GPHN-215ENST00000557654 FOXK1P85037 733 aa13.27□□□□□ -0.29
GPHN-215ENST00000557654 PLPP6Q8IY26 295 aa13.27□□□□□ -0.29
GPHN-215ENST00000557654 PPP1R15BQ5SWA1 713 aa13.25□□□□□ -0.29
GPHN-215ENST00000557654 SNPHO15079 494 aa13.24□□□□□ -0.29
GPHN-215ENST00000557654 LCE2DQ5TA82 110 aaPredicted RBP13.24□□□□□ -0.29
GPHN-215ENST00000557654 DDX27Q96GQ7 796 aaKnown RBP13.24□□□□□ -0.29
GPHN-215ENST00000557654 MFSD10Q14728 455 aa13.23□□□□□ -0.29
GPHN-215ENST00000557654 ST18O60284 1047 aa13.21□□□□□ -0.29
GPHN-215ENST00000557654 DOK7Q18PE1 504 aa13.2□□□□□ -0.3
GPHN-215ENST00000557654 ZNF710Q8N1W2 664 aa13.18□□□□□ -0.3
GPHN-215ENST00000557654 KHSRPQ92945 711 aaKnown RBP eCLIP13.16□□□□□ -0.3
GPHN-215ENST00000557654 UPF1Q92900 1129 aaKnown RBP eCLIP13.14□□□□□ -0.311e-6■■■■■ 27.9
GPHN-215ENST00000557654 ARSIQ5FYB1 569 aa13.13□□□□□ -0.31
GPHN-215ENST00000557654 RIMBP2O15034 1052 aa13.12□□□□□ -0.31
GPHN-215ENST00000557654 SLC34A2O95436 690 aa13.12□□□□□ -0.31
GPHN-215ENST00000557654 MARVELD3Q96A59 401 aa13.12□□□□□ -0.31
GPHN-215ENST00000557654 GPR153Q6NV75 609 aa13.11□□□□□ -0.31
GPHN-215ENST00000557654 EMILIN3Q9NT22 766 aa13.11□□□□□ -0.31
GPHN-215ENST00000557654 WDR70Q9NW82 654 aa13.11□□□□□ -0.31
GPHN-215ENST00000557654 PCDHGA4Q9Y5G9 962 aa13.11□□□□□ -0.31
GPHN-215ENST00000557654 KDM2AQ9Y2K7 1162 aa13.1□□□□□ -0.31
GPHN-215ENST00000557654 HOXB1P14653 301 aaPredicted RBP13.08□□□□□ -0.32
GPHN-215ENST00000557654 OXER1Q8TDS5 423 aa13.08□□□□□ -0.32
GPHN-215ENST00000557654 PTCD2Q8WV60 388 aaKnown RBP13.08□□□□□ -0.32
GPHN-215ENST00000557654 ZSWIM6Q9HCJ5 1215 aa13.07□□□□□ -0.32
GPHN-215ENST00000557654 NUDT7P0C024 238 aa13.06□□□□□ -0.32
GPHN-215ENST00000557654 CAMK2BQ13554 666 aa13.06□□□□□ -0.32
GPHN-215ENST00000557654 E2F4Q16254 413 aa13.04□□□□□ -0.32
GPHN-215ENST00000557654 EMP3P54852 163 aa13.03□□□□□ -0.32
GPHN-215ENST00000557654 DPYSL4O14531 572 aa13.01□□□□□ -0.33
GPHN-215ENST00000557654 POTEGQ6S5H5 508 aa13.01□□□□□ -0.33
GPHN-215ENST00000557654 POTEMA6NI47 508 aa13□□□□□ -0.33
GPHN-215ENST00000557654 MAP3K9P80192 1104 aa12.99□□□□□ -0.33
GPHN-215ENST00000557654 KDM4FA0A1W2PPD8 638 aa12.98□□□□□ -0.33
GPHN-215ENST00000557654 FAM205CA6NFA0 338 aa12.98□□□□□ -0.33
GPHN-215ENST00000557654 TBC1D12O60347 775 aa12.98□□□□□ -0.33
GPHN-215ENST00000557654 VSIG10Q8N0Z9 540 aa12.98□□□□□ -0.33
GPHN-215ENST00000557654 KCNV2Q8TDN2 545 aa12.98□□□□□ -0.33
GPHN-215ENST00000557654 POTEB3A0JP26 581 aa12.96□□□□□ -0.33
GPHN-215ENST00000557654 POTEBQ6S5H4 581 aa12.96□□□□□ -0.33
GPHN-215ENST00000557654 LHX6Q9UPM6 363 aa12.95□□□□□ -0.34
GPHN-215ENST00000557654 ERBB3P21860 1342 aa12.94□□□□□ -0.34
GPHN-215ENST00000557654 EVI5O60447 810 aa12.94□□□□□ -0.34
GPHN-215ENST00000557654 ZNF316A6NFI3 1004 aaPredicted RBP12.93□□□□□ -0.34
GPHN-215ENST00000557654 VARS2Q5ST30 1063 aaKnown RBP12.92□□□□□ -0.34
GPHN-215ENST00000557654 HS3ST6Q96QI5 342 aa12.92□□□□□ -0.34
GPHN-215ENST00000557654 ANO8Q9HCE9 1232 aaPredicted RBP12.87□□□□□ -0.35
GPHN-215ENST00000557654 ARIH1Q9Y4X5 557 aaPredicted RBP12.87□□□□□ -0.35
GPHN-215ENST00000557654 PDIA6Q15084 440 aa12.85□□□□□ -0.35
GPHN-215ENST00000557654 SLC24A1O60721 1099 aa12.84□□□□□ -0.35
GPHN-215ENST00000557654 P3H3Q8IVL6 736 aa12.84□□□□□ -0.35
GPHN-215ENST00000557654 ARHGEF1Q92888 912 aaKnown RBP12.83□□□□□ -0.36
GPHN-215ENST00000557654 ZNF454Q8N9F8 522 aa12.81□□□□□ -0.36
GPHN-215ENST00000557654 DDX12PQ92771 950 aa12.81□□□□□ -0.36
GPHN-215ENST00000557654 CDAN1Q8IWY9 1227 aa12.8□□□□□ -0.36
GPHN-215ENST00000557654 SPDYE16A6NNV3 312 aaPredicted RBP12.79□□□□□ -0.36
GPHN-215ENST00000557654 FOSBP53539 338 aa12.78□□□□□ -0.36
GPHN-215ENST00000557654 JPH4Q96JJ6 628 aa12.77□□□□□ -0.37
GPHN-215ENST00000557654 PCDHGA10Q9Y5H3 936 aa12.77□□□□□ -0.37
GPHN-215ENST00000557654 PPP4R3BQ5MIZ7 849 aa12.76□□□□□ -0.37
GPHN-215ENST00000557654 ZNF687Q8N1G0 1237 aa12.76□□□□□ -0.37
GPHN-215ENST00000557654 GRXCR2A6NFK2 248 aa12.75□□□□□ -0.37
GPHN-215ENST00000557654 POTEEQ6S8J3 1075 aa12.75□□□□□ -0.37
GPHN-215ENST00000557654 PSDA5PKW4 1024 aaPredicted RBP12.74□□□□□ -0.37
GPHN-215ENST00000557654 AXIN2Q9Y2T1 843 aa12.74□□□□□ -0.37
GPHN-215ENST00000557654 SEMA3EO15041 775 aa12.73□□□□□ -0.37
GPHN-215ENST00000557654 MLLT3P42568 568 aaPredicted RBP12.73□□□□□ -0.37
GPHN-215ENST00000557654 PTGER2P43116 358 aa12.73□□□□□ -0.37
GPHN-215ENST00000557654 KRTAP3-3Q9BYR6 98 aa12.72□□□□□ -0.37
GPHN-215ENST00000557654 KRTAP3-2Q9BYR7 98 aa12.72□□□□□ -0.37
GPHN-215ENST00000557654 PHF14O94880 888 aa12.71□□□□□ -0.37
GPHN-215ENST00000557654 NBR1Q14596 966 aa12.71□□□□□ -0.37
GPHN-215ENST00000557654 ADAM33Q9BZ11 813 aa12.71□□□□□ -0.37
GPHN-215ENST00000557654 ZDHHC16Q969W1 377 aa12.7□□□□□ -0.38
GPHN-215ENST00000557654 PRIM1P49642 420 aaKnown RBP12.69□□□□□ -0.38
GPHN-215ENST00000557654 RBM33Q96EV2 1170 aaKnown RBP12.69□□□□□ -0.38
GPHN-215ENST00000557654 PSEN2P49810 448 aa12.68□□□□□ -0.38
GPHN-215ENST00000557654 TYW1BQ6NUM6 668 aa12.68□□□□□ -0.38
GPHN-215ENST00000557654 KCNK17Q96T54 332 aa12.66□□□□□ -0.38
GPHN-215ENST00000557654 EPAS1Q99814 870 aa12.65□□□□□ -0.38
GPHN-215ENST00000557654 BCL2L12Q9HB09 334 aa12.65□□□□□ -0.38
GPHN-215ENST00000557654 OSBPP22059 807 aa12.64□□□□□ -0.39
GPHN-215ENST00000557654 ARHGAP33O14559 1287 aa12.63□□□□□ -0.39
GPHN-215ENST00000557654 DMRTA1Q5VZB9 504 aa12.63□□□□□ -0.39
GPHN-215ENST00000557654 FBXW7Q969H0 707 aa12.63□□□□□ -0.39
GPHN-215ENST00000557654 TESPA1A2RU30 521 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms