RNA–Protein interactions for RNA: ENST00000557511.5

PSEN1-223, Transcript of presenilin 1, humanhuman

TSL 5 BASIC

Gene PSEN1, Length 1,230 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-223ENST00000557511 TEX14Q8IWB6 1497 aa13.28□□□□□ -0.28
PSEN1-223ENST00000557511 HECW1Q76N89 1606 aa13.28□□□□□ -0.28
PSEN1-223ENST00000557511 LOC105371045A0A1W2PR82 267 aa13.27□□□□□ -0.29
PSEN1-223ENST00000557511 CEP162Q5TB80 1403 aa13.26□□□□□ -0.29
PSEN1-223ENST00000557511 CD109Q6YHK3 1445 aa13.26□□□□□ -0.29
PSEN1-223ENST00000557511 CASKIN1Q8WXD9 1431 aa13.23□□□□□ -0.29
PSEN1-223ENST00000557511 TSPOAP1O95153 1857 aa13.23□□□□□ -0.29
PSEN1-223ENST00000557511 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
PSEN1-223ENST00000557511 CDK13Q14004 1512 aaKnown RBP13.21□□□□□ -0.29
PSEN1-223ENST00000557511 CFAP43Q8NDM7 1665 aa13.21□□□□□ -0.3
PSEN1-223ENST00000557511 KDM6BO15054 1643 aa13.21□□□□□ -0.3
PSEN1-223ENST00000557511 MAP3K4Q9Y6R4 1608 aa13.21□□□□□ -0.3
PSEN1-223ENST00000557511 FYCO1Q9BQS8 1478 aa13.2□□□□□ -0.3
PSEN1-223ENST00000557511 MAGI3Q5TCQ9 1506 aa13.19□□□□□ -0.3
PSEN1-223ENST00000557511 ZBTB12Q9Y330 459 aaPredicted RBP13.19□□□□□ -0.3
PSEN1-223ENST00000557511 PCF11O94913 1555 aaKnown RBP13.18□□□□□ -0.3
PSEN1-223ENST00000557511 PHLDB1Q86UU1 1377 aa13.17□□□□□ -0.3
PSEN1-223ENST00000557511 TROQ12816 1431 aaPredicted RBP13.16□□□□□ -0.3
PSEN1-223ENST00000557511 ABCA9Q8IUA7 1624 aa13.16□□□□□ -0.3
PSEN1-223ENST00000557511 PPRC1Q5VV67 1664 aaKnown RBP13.13□□□□□ -0.31
PSEN1-223ENST00000557511 MTUS2Q5JR59 1369 aa13.13□□□□□ -0.31
PSEN1-223ENST00000557511 KIF14Q15058 1648 aa13.13□□□□□ -0.31
PSEN1-223ENST00000557511 NEO1Q92859 1461 aa13.11□□□□□ -0.31
PSEN1-223ENST00000557511 EFCAB2Q5VUJ9 269 aa13.11□□□□□ -0.31
PSEN1-223ENST00000557511 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.11□□□□□ -0.31
PSEN1-223ENST00000557511 VPS8Q8N3P4 1428 aa13.11□□□□□ -0.31
PSEN1-223ENST00000557511 CFAP74Q9C0B2 1584 aa13.09□□□□□ -0.31
PSEN1-223ENST00000557511 FANCAO15360 1455 aa13.09□□□□□ -0.31
PSEN1-223ENST00000557511 PLCH2O75038 1416 aa13.08□□□□□ -0.32
PSEN1-223ENST00000557511 AKNAQ7Z591 1439 aa13.07□□□□□ -0.32
PSEN1-223ENST00000557511 ARAP3Q8WWN8 1544 aa13.07□□□□□ -0.32
PSEN1-223ENST00000557511 TTC37Q6PGP7 1564 aa13.07□□□□□ -0.32
PSEN1-223ENST00000557511 DENND4BO75064 1496 aaPredicted RBP13.05□□□□□ -0.32
PSEN1-223ENST00000557511 COL17A1Q9UMD9 1497 aaPredicted RBP13.05□□□□□ -0.32
PSEN1-223ENST00000557511 ARHGAP5Q13017 1502 aa13.05□□□□□ -0.32
PSEN1-223ENST00000557511 LRRIQ1Q96JM4 1722 aa13.05□□□□□ -0.32
PSEN1-223ENST00000557511 RAPGEF3O95398 923 aa13.04□□□□□ -0.32
PSEN1-223ENST00000557511 CCNB3Q8WWL7 1395 aa13.04□□□□□ -0.32
PSEN1-223ENST00000557511 MYO5CQ9NQX4 1742 aa13.03□□□□□ -0.32
PSEN1-223ENST00000557511 MYT1LQ9UL68 1186 aa13.03□□□□□ -0.32
PSEN1-223ENST00000557511 ADGRL1O94910 1474 aa13.03□□□□□ -0.32
PSEN1-223ENST00000557511 EHBP1L1Q8N3D4 1523 aa13.03□□□□□ -0.32
PSEN1-223ENST00000557511 ZNF777Q9ULD5 760 aaPredicted RBP13.02□□□□□ -0.33
PSEN1-223ENST00000557511 SCAPERQ9BY12 1400 aa13.02□□□□□ -0.33
PSEN1-223ENST00000557511 CFDP1Q9UEE9 299 aaPredicted RBP13.01□□□□□ -0.33
PSEN1-223ENST00000557511 TIAM1Q13009 1591 aa12.98□□□□□ -0.33
PSEN1-223ENST00000557511 ARID4BQ4LE39 1312 aaPredicted RBP12.97□□□□□ -0.33
PSEN1-223ENST00000557511 MAP3K1Q13233 1512 aa12.97□□□□□ -0.33
PSEN1-223ENST00000557511 PREX2Q70Z35 1606 aa12.96□□□□□ -0.33
PSEN1-223ENST00000557511 POGZQ7Z3K3 1410 aa12.96□□□□□ -0.34
PSEN1-223ENST00000557511 GPATCH8Q9UKJ3 1502 aaKnown RBP12.95□□□□□ -0.34
PSEN1-223ENST00000557511 SUPT6HQ7KZ85 1726 aaKnown RBP12.95□□□□□ -0.34
PSEN1-223ENST00000557511 ZNF518AQ6AHZ1 1483 aa12.95□□□□□ -0.34
PSEN1-223ENST00000557511 LRRC9Q6ZRR7 1453 aa12.95□□□□□ -0.34
PSEN1-223ENST00000557511 PLEKHH2Q8IVE3 1493 aa12.95□□□□□ -0.34
PSEN1-223ENST00000557511 NCOA2Q15596 1464 aa12.94□□□□□ -0.34
PSEN1-223ENST00000557511 MAGI2Q86UL8 1455 aa12.94□□□□□ -0.34
PSEN1-223ENST00000557511 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
PSEN1-223ENST00000557511 MKRN4PQ13434 485 aaPredicted RBP12.92□□□□□ -0.34
PSEN1-223ENST00000557511 AFAP1Q8N556 730 aa12.92□□□□□ -0.34
PSEN1-223ENST00000557511 ITSN2Q9NZM3 1697 aa12.92□□□□□ -0.34
PSEN1-223ENST00000557511 ZFYVE16Q7Z3T8 1539 aa12.92□□□□□ -0.34
PSEN1-223ENST00000557511 CDC42BPAQ5VT25 1732 aa12.91□□□□□ -0.34
PSEN1-223ENST00000557511 CDC42BPBQ9Y5S2 1711 aa12.91□□□□□ -0.34
PSEN1-223ENST00000557511 HNRNPMP52272 730 aaKnown RBP eCLIP12.91□□□□□ -0.34
PSEN1-223ENST00000557511 KANK4Q5T7N3 995 aaPredicted RBP12.91□□□□□ -0.34
PSEN1-223ENST00000557511 FRMPD1Q5SYB0 1578 aa12.9□□□□□ -0.34
PSEN1-223ENST00000557511 ABCC1P33527 1531 aa12.9□□□□□ -0.34
PSEN1-223ENST00000557511 ZMYM4Q5VZL5 1548 aa12.9□□□□□ -0.34
PSEN1-223ENST00000557511 RICTORQ6R327 1708 aa12.9□□□□□ -0.34
PSEN1-223ENST00000557511 KIAA1107Q9UPP5 1409 aa12.89□□□□□ -0.35
PSEN1-223ENST00000557511 RSPH4AQ5TD94 716 aa12.89□□□□□ -0.35
PSEN1-223ENST00000557511 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
PSEN1-223ENST00000557511 ARHGEF40Q8TER5 1519 aa12.88□□□□□ -0.35
PSEN1-223ENST00000557511 KDM4FA0A1W2PPD8 638 aa12.87□□□□□ -0.35
PSEN1-223ENST00000557511 SYCP2Q9BX26 1530 aa12.87□□□□□ -0.35
PSEN1-223ENST00000557511 TRAPPC8Q9Y2L5 1435 aa12.87□□□□□ -0.35
PSEN1-223ENST00000557511 SAMD9LQ8IVG5 1584 aa12.86□□□□□ -0.35
PSEN1-223ENST00000557511 ATP10AO60312 1499 aa12.86□□□□□ -0.35
PSEN1-223ENST00000557511 TSPY4P0CV99 314 aa12.86□□□□□ -0.35
PSEN1-223ENST00000557511 TSPY10P0CW01 314 aa12.86□□□□□ -0.35
PSEN1-223ENST00000557511 C9orf84Q5VXU9 1444 aa12.86□□□□□ -0.35
PSEN1-223ENST00000557511 YEATS2Q9ULM3 1422 aa12.86□□□□□ -0.35
PSEN1-223ENST00000557511 ZNF644Q9H582 1327 aaPredicted RBP12.86□□□□□ -0.35
PSEN1-223ENST00000557511 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
PSEN1-223ENST00000557511 ARHGEF12Q9NZN5 1544 aa12.85□□□□□ -0.35
PSEN1-223ENST00000557511 MYOM3Q5VTT5 1437 aa12.85□□□□□ -0.35
PSEN1-223ENST00000557511 KDM5CP41229 1560 aa12.85□□□□□ -0.35
PSEN1-223ENST00000557511 HECW2Q9P2P5 1572 aa12.85□□□□□ -0.35
PSEN1-223ENST00000557511 MLECQ14165 292 aa12.84□□□□□ -0.35
PSEN1-223ENST00000557511 ESF1Q9H501 851 aaKnown RBP12.84□□□□□ -0.35
PSEN1-223ENST00000557511 MIA2Q96PC5 1412 aa12.84□□□□□ -0.35
PSEN1-223ENST00000557511 CAMSAP2Q08AD1 1489 aa12.83□□□□□ -0.36
PSEN1-223ENST00000557511 CCDC141Q6ZP82 1450 aa12.81□□□□□ -0.36
PSEN1-223ENST00000557511 SPDYE2BA6NHP3 402 aa12.79□□□□□ -0.36
PSEN1-223ENST00000557511 SPDYE6P0CI01 402 aa12.79□□□□□ -0.36
PSEN1-223ENST00000557511 SPDYE2Q495Y8 402 aa12.79□□□□□ -0.36
PSEN1-223ENST00000557511 RTEL1-TNFRSF6BF6WH68 1400 aa12.79□□□□□ -0.36
PSEN1-223ENST00000557511 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
PSEN1-223ENST00000557511 ATP7AQ04656 1500 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms