RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 EFCAB2Q5VUJ9 269 aa18.11■□□□□ 0.49
CCDC88C-213ENST00000557455 TROQ12816 1431 aaPredicted RBP18.11■□□□□ 0.49
CCDC88C-213ENST00000557455 RIMS1Q86UR5 1692 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-213ENST00000557455 CLIP1P30622 1438 aa18.1■□□□□ 0.49
CCDC88C-213ENST00000557455 YEATS2Q9ULM3 1422 aa18.1■□□□□ 0.49
CCDC88C-213ENST00000557455 POGZQ7Z3K3 1410 aa18.09■□□□□ 0.49
CCDC88C-213ENST00000557455 SIGLEC1Q9BZZ2 1709 aa18.08■□□□□ 0.48
CCDC88C-213ENST00000557455 PCF11O94913 1555 aaKnown RBP18.08■□□□□ 0.48
CCDC88C-213ENST00000557455 ARHGAP5Q13017 1502 aa18.07■□□□□ 0.48
CCDC88C-213ENST00000557455 CASKIN1Q8WXD9 1431 aa18.06■□□□□ 0.48
CCDC88C-213ENST00000557455 ILDR1Q86SU0 546 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-213ENST00000557455 CCDC18Q5T9S5 1454 aa18.06■□□□□ 0.48
CCDC88C-213ENST00000557455 CDC42BPBQ9Y5S2 1711 aa18.05■□□□□ 0.48
CCDC88C-213ENST00000557455 FER1L4A9Z1Z3 1794 aa18.02■□□□□ 0.48
CCDC88C-213ENST00000557455 ATP10AO60312 1499 aa18.01■□□□□ 0.47
CCDC88C-213ENST00000557455 ZNF518AQ6AHZ1 1483 aa18.01■□□□□ 0.47
CCDC88C-213ENST00000557455 MLECQ14165 292 aa18.01■□□□□ 0.47
CCDC88C-213ENST00000557455 PREX2Q70Z35 1606 aa18.01■□□□□ 0.47
CCDC88C-213ENST00000557455 FYCO1Q9BQS8 1478 aa18■□□□□ 0.47
CCDC88C-213ENST00000557455 C9orf84Q5VXU9 1444 aa17.99■□□□□ 0.47
CCDC88C-213ENST00000557455 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
CCDC88C-213ENST00000557455 KDM5CP41229 1560 aa17.99■□□□□ 0.47
CCDC88C-213ENST00000557455 AFAP1Q8N556 730 aa17.98■□□□□ 0.47
CCDC88C-213ENST00000557455 MYT1LQ9UL68 1186 aa17.98■□□□□ 0.47
CCDC88C-213ENST00000557455 CDC42BPAQ5VT25 1732 aa17.98■□□□□ 0.47
CCDC88C-213ENST00000557455 LMTK3Q96Q04 1460 aa17.97■□□□□ 0.47
CCDC88C-213ENST00000557455 ITSN2Q9NZM3 1697 aa17.95■□□□□ 0.46
CCDC88C-213ENST00000557455 ARHGEF12Q9NZN5 1544 aa17.94■□□□□ 0.46
CCDC88C-213ENST00000557455 ABCC1P33527 1531 aa17.93■□□□□ 0.46
CCDC88C-213ENST00000557455 DIP2CQ9Y2E4 1556 aa17.92■□□□□ 0.46
CCDC88C-213ENST00000557455 MLH3Q9UHC1 1453 aa17.91■□□□□ 0.46
CCDC88C-213ENST00000557455 ABCA6Q8N139 1617 aa17.9■□□□□ 0.46
CCDC88C-213ENST00000557455 TRAPPC8Q9Y2L5 1435 aa17.9■□□□□ 0.46
CCDC88C-213ENST00000557455 REREQ9P2R6 1566 aa17.9■□□□□ 0.46
CCDC88C-213ENST00000557455 HSPA2P54652 639 aa17.88■□□□□ 0.45
CCDC88C-213ENST00000557455 ZNF777Q9ULD5 760 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-213ENST00000557455 KIDINS220Q9ULH0 1771 aa17.86■□□□□ 0.45
CCDC88C-213ENST00000557455 GPATCH8Q9UKJ3 1502 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-213ENST00000557455 SAMD9LQ8IVG5 1584 aa17.86■□□□□ 0.45
CCDC88C-213ENST00000557455 PREX1Q8TCU6 1659 aa17.86■□□□□ 0.45
CCDC88C-213ENST00000557455 CEBPAP49715 358 aaPredicted RBP17.84■□□□□ 0.45
CCDC88C-213ENST00000557455 MTUS2Q5JR59 1369 aa17.83■□□□□ 0.45
CCDC88C-213ENST00000557455 AGLP35573 1532 aa17.82■□□□□ 0.44
CCDC88C-213ENST00000557455 SYCP2Q9BX26 1530 aa17.82■□□□□ 0.44
CCDC88C-213ENST00000557455 SETD1BQ9UPS6 1966 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-213ENST00000557455 CCNB3Q8WWL7 1395 aa17.81■□□□□ 0.44
CCDC88C-213ENST00000557455 FBXO41Q8TF61 875 aa17.81■□□□□ 0.44
CCDC88C-213ENST00000557455 ESF1Q9H501 851 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-213ENST00000557455 CFDP1Q9UEE9 299 aaPredicted RBP17.81■□□□□ 0.44
CCDC88C-213ENST00000557455 HNRNPMP52272 730 aaKnown RBP eCLIP17.8■□□□□ 0.44
CCDC88C-213ENST00000557455 C3P01024 1663 aa17.8■□□□□ 0.44
CCDC88C-213ENST00000557455 PLEKHH2Q8IVE3 1493 aa17.79■□□□□ 0.44
CCDC88C-213ENST00000557455 CEP162Q5TB80 1403 aa17.79■□□□□ 0.44
CCDC88C-213ENST00000557455 SPAG9O60271 1321 aaKnown RBP17.78■□□□□ 0.44
CCDC88C-213ENST00000557455 KIAA1107Q9UPP5 1409 aa17.78■□□□□ 0.44
CCDC88C-213ENST00000557455 EHBP1L1Q8N3D4 1523 aa17.77■□□□□ 0.44
CCDC88C-213ENST00000557455 SUPT6HQ7KZ85 1726 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-213ENST00000557455 UHRF1BP1Q6BDS2 1440 aa17.76■□□□□ 0.43
CCDC88C-213ENST00000557455 ATP7AQ04656 1500 aa17.76■□□□□ 0.43
CCDC88C-213ENST00000557455 TIAM1Q13009 1591 aa17.75■□□□□ 0.43
CCDC88C-213ENST00000557455 INO80Q9ULG1 1556 aaPredicted RBP17.74■□□□□ 0.43
CCDC88C-213ENST00000557455 CNTLNQ9NXG0 1405 aa17.73■□□□□ 0.43
CCDC88C-213ENST00000557455 STRCQ7RTU9 1775 aa17.71■□□□□ 0.43
CCDC88C-213ENST00000557455 MROH2AA6NES4 1674 aa17.71■□□□□ 0.43
CCDC88C-213ENST00000557455 ADGBQ8N7X0 1667 aa17.7■□□□□ 0.42
CCDC88C-213ENST00000557455 A2MP01023 1474 aa17.69■□□□□ 0.42
CCDC88C-213ENST00000557455 PLXNC1O60486 1568 aa17.69■□□□□ 0.42
CCDC88C-213ENST00000557455 ZNF644Q9H582 1327 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-213ENST00000557455 DMRT2Q9Y5R5 561 aa17.68■□□□□ 0.42
CCDC88C-213ENST00000557455 CLTCQ00610 1675 aaKnown RBP17.67■□□□□ 0.42
CCDC88C-213ENST00000557455 MBD5Q9P267 1494 aa17.66■□□□□ 0.42
CCDC88C-213ENST00000557455 ZMYM3Q14202 1370 aa17.66■□□□□ 0.42
CCDC88C-213ENST00000557455 NCOA2Q15596 1464 aa17.65■□□□□ 0.42
CCDC88C-213ENST00000557455 CERKQ8TCT0 537 aa17.65■□□□□ 0.42
CCDC88C-213ENST00000557455 GGT6Q6P531 493 aa17.64■□□□□ 0.41
CCDC88C-213ENST00000557455 LOC105371045A0A1W2PR82 267 aa17.63■□□□□ 0.41
CCDC88C-213ENST00000557455 RTEL1-TNFRSF6BF6WH68 1400 aa17.63■□□□□ 0.41
CCDC88C-213ENST00000557455 NPATQ14207 1427 aa17.63■□□□□ 0.41
CCDC88C-213ENST00000557455 CAMSAP2Q08AD1 1489 aa17.62■□□□□ 0.41
CCDC88C-213ENST00000557455 VPS8Q8N3P4 1428 aa17.61■□□□□ 0.41
CCDC88C-213ENST00000557455 CCDC141Q6ZP82 1450 aa17.6■□□□□ 0.41
CCDC88C-213ENST00000557455 PTPRTO14522 1441 aa17.59■□□□□ 0.41
CCDC88C-213ENST00000557455 RSPH4AQ5TD94 716 aa17.59■□□□□ 0.41
CCDC88C-213ENST00000557455 PPP6R1Q9UPN7 881 aa17.59■□□□□ 0.41
CCDC88C-213ENST00000557455 DHX29Q7Z478 1369 aaKnown RBP17.58■□□□□ 0.4
CCDC88C-213ENST00000557455 LRRC9Q6ZRR7 1453 aa17.57■□□□□ 0.4
CCDC88C-213ENST00000557455 CAMSAP1Q5T5Y3 1602 aa17.57■□□□□ 0.4
CCDC88C-213ENST00000557455 MYO3AQ8NEV4 1616 aa17.57■□□□□ 0.4
CCDC88C-213ENST00000557455 NCOA1Q15788 1441 aa17.56■□□□□ 0.4
CCDC88C-213ENST00000557455 ZNF142P52746 1687 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-213ENST00000557455 PTPRKQ15262 1439 aa17.55■□□□□ 0.4
CCDC88C-213ENST00000557455 ARHGEF5Q12774 1597 aa17.55■□□□□ 0.4
CCDC88C-213ENST00000557455 KIF3BO15066 747 aa17.53■□□□□ 0.4
CCDC88C-213ENST00000557455 CEP170BQ9Y4F5 1589 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-213ENST00000557455 MAP3K1Q13233 1512 aa17.52■□□□□ 0.4
CCDC88C-213ENST00000557455 TSPY4P0CV99 314 aa17.52■□□□□ 0.4
CCDC88C-213ENST00000557455 TSPY10P0CW01 314 aa17.52■□□□□ 0.4
CCDC88C-213ENST00000557455 KDM5DQ9BY66 1539 aa17.49■□□□□ 0.39
CCDC88C-213ENST00000557455 KANK4Q5T7N3 995 aaPredicted RBP17.49■□□□□ 0.39
CCDC88C-213ENST00000557455 NCKAP5LQ9HCH0 1330 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms