RNA–Protein interactions for RNA: ENST00000557329.1

CHD8-212, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 2

Gene CHD8, Length 578 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-212ENST00000557329 STK24Q9Y6E0 443 aa10.09□□□□□ -0.79
CHD8-212ENST00000557329 CHGAP10645 457 aaKnown RBP10.07□□□□□ -0.8
CHD8-212ENST00000557329 HOXB3P14651 431 aaPredicted RBP10.07□□□□□ -0.8
CHD8-212ENST00000557329 HOXB1P14653 301 aaPredicted RBP10.04□□□□□ -0.8
CHD8-212ENST00000557329 DOK7Q18PE1 504 aa10.02□□□□□ -0.81
CHD8-212ENST00000557329 NLRP6P59044 892 aa10.01□□□□□ -0.81
CHD8-212ENST00000557329 ZNF710Q8N1W2 664 aa10.01□□□□□ -0.81
CHD8-212ENST00000557329 EFCAB3Q8N7B9 438 aa10.01□□□□□ -0.81
CHD8-212ENST00000557329 BBXQ8WY36 941 aaPredicted RBP10□□□□□ -0.81
CHD8-212ENST00000557329 ZBTB4Q9P1Z0 1013 aaPredicted RBP10□□□□□ -0.81
CHD8-212ENST00000557329 RIMBP2O15034 1052 aa9.96□□□□□ -0.82
CHD8-212ENST00000557329 ERBB3P21860 1342 aa9.95□□□□□ -0.82
CHD8-212ENST00000557329 MICALL2Q8IY33 904 aa9.94□□□□□ -0.82
CHD8-212ENST00000557329 ZSWIM6Q9HCJ5 1215 aa9.93□□□□□ -0.82
CHD8-212ENST00000557329 TMEM92Q6UXU6 159 aa9.9□□□□□ -0.82
CHD8-212ENST00000557329 MFRPQ9BY79 579 aa9.89□□□□□ -0.83
CHD8-212ENST00000557329 VARS2Q5ST30 1063 aaKnown RBP9.88□□□□□ -0.83
CHD8-212ENST00000557329 MS4A4AQ96JQ5 239 aa9.88□□□□□ -0.83
CHD8-212ENST00000557329 PHF8Q9UPP1 1060 aa9.88□□□□□ -0.83
CHD8-212ENST00000557329 FBXO22Q8NEZ5 403 aa9.87□□□□□ -0.83
CHD8-212ENST00000557329 GPR153Q6NV75 609 aa9.86□□□□□ -0.83
CHD8-212ENST00000557329 SPRYD3Q8NCJ5 442 aa9.86□□□□□ -0.83
CHD8-212ENST00000557329 ZNF687Q8N1G0 1237 aa9.85□□□□□ -0.83
CHD8-212ENST00000557329 RNF166Q96A37 237 aaPredicted RBP9.83□□□□□ -0.84
CHD8-212ENST00000557329 NKX1-1Q15270 411 aaPredicted RBP9.82□□□□□ -0.84
CHD8-212ENST00000557329 GTPBP6O43824 516 aaPredicted RBP9.8□□□□□ -0.84
CHD8-212ENST00000557329 MYT1LQ9UL68 1186 aa9.79□□□□□ -0.84
CHD8-212ENST00000557329 PTGER2P43116 358 aa9.78□□□□□ -0.84
CHD8-212ENST00000557329 ARSIQ5FYB1 569 aa9.75□□□□□ -0.85
CHD8-212ENST00000557329 PAXIP1Q6ZW49 1069 aaPredicted RBP9.75□□□□□ -0.85
CHD8-212ENST00000557329 ZNF316A6NFI3 1004 aaPredicted RBP9.73□□□□□ -0.85
CHD8-212ENST00000557329 CFAP44Q96MT7 982 aa9.73□□□□□ -0.85
CHD8-212ENST00000557329 PLCB2Q00722 1185 aa9.7□□□□□ -0.86
CHD8-212ENST00000557329 KIF3CO14782 793 aa9.69□□□□□ -0.86
CHD8-212ENST00000557329 PPP1R37O75864 691 aa9.67□□□□□ -0.86
CHD8-212ENST00000557329 LSM11P83369 360 aaKnown RBP eCLIP9.67□□□□□ -0.86
CHD8-212ENST00000557329 ANKRD13DQ6ZTN6 518 aa9.67□□□□□ -0.86
CHD8-212ENST00000557329 TMC2Q8TDI7 906 aa9.67□□□□□ -0.86
CHD8-212ENST00000557329 KHSRPQ92945 711 aaKnown RBP eCLIP9.67□□□□□ -0.86
CHD8-212ENST00000557329 PDE4AP27815 886 aa9.66□□□□□ -0.86
CHD8-212ENST00000557329 PBX2P40425 430 aa9.66□□□□□ -0.86
CHD8-212ENST00000557329 C2orf72A6NCS6 295 aa9.65□□□□□ -0.86
CHD8-212ENST00000557329 SLC34A2O95436 690 aa9.64□□□□□ -0.87
CHD8-212ENST00000557329 GPHNQ9NQX3 736 aaPredicted RBP9.62□□□□□ -0.87
CHD8-212ENST00000557329 NUDT7P0C024 238 aa9.61□□□□□ -0.87
CHD8-212ENST00000557329 PCDHGA4Q9Y5G9 962 aa9.6□□□□□ -0.87
CHD8-212ENST00000557329 LHX6Q9UPM6 363 aa9.58□□□□□ -0.88
CHD8-212ENST00000557329 FOXK1P85037 733 aa9.57□□□□□ -0.88
CHD8-212ENST00000557329 CRISPLD2Q9H0B8 497 aa9.57□□□□□ -0.88
CHD8-212ENST00000557329 POTEEQ6S8J3 1075 aa9.56□□□□□ -0.88
CHD8-212ENST00000557329 WDR70Q9NW82 654 aa9.56□□□□□ -0.88
CHD8-212ENST00000557329 PSDA5PKW4 1024 aaPredicted RBP9.54□□□□□ -0.88
CHD8-212ENST00000557329 DDX27Q96GQ7 796 aaKnown RBP9.54□□□□□ -0.88
CHD8-212ENST00000557329 MFSD10Q14728 455 aa9.53□□□□□ -0.88
CHD8-212ENST00000557329 LARP6Q9BRS8 491 aaKnown RBP9.52□□□□□ -0.89
CHD8-212ENST00000557329 AXIN2Q9Y2T1 843 aa9.52□□□□□ -0.89
CHD8-212ENST00000557329 ARHGAP33O14559 1287 aa9.51□□□□□ -0.89
CHD8-212ENST00000557329 TBC1D12O60347 775 aa9.51□□□□□ -0.89
CHD8-212ENST00000557329 HAP1P54257 671 aaPredicted RBP9.51□□□□□ -0.89
CHD8-212ENST00000557329 KDM4FA0A1W2PPD8 638 aa9.5□□□□□ -0.89
CHD8-212ENST00000557329 PPP1R15BQ5SWA1 713 aa9.5□□□□□ -0.89
CHD8-212ENST00000557329 HCSTQ9UBK5 93 aa9.5□□□□□ -0.89
CHD8-212ENST00000557329 NCKAP5LQ9HCH0 1330 aa9.5□□□□□ -0.89
CHD8-212ENST00000557329 VSIG10Q8N0Z9 540 aa9.49□□□□□ -0.89
CHD8-212ENST00000557329 PTCD2Q8WV60 388 aaKnown RBP9.49□□□□□ -0.89
CHD8-212ENST00000557329 ADGRD1Q6QNK2 874 aa9.48□□□□□ -0.89
CHD8-212ENST00000557329 PLPP6Q8IY26 295 aa9.48□□□□□ -0.89
CHD8-212ENST00000557329 TSHZ2Q9NRE2 1034 aa9.48□□□□□ -0.89
CHD8-212ENST00000557329 TK2O00142 265 aa9.47□□□□□ -0.89
CHD8-212ENST00000557329 DSG2Q14126 1118 aa9.46□□□□□ -0.9
CHD8-212ENST00000557329 CADPS2Q86UW7 1296 aa9.46□□□□□ -0.9
CHD8-212ENST00000557329 PLA2G2EQ9NZK7 142 aa9.46□□□□□ -0.9
CHD8-212ENST00000557329 P3H3Q8IVL6 736 aa9.45□□□□□ -0.9
CHD8-212ENST00000557329 HRO43593 1189 aa9.42□□□□□ -0.9
CHD8-212ENST00000557329 CAMK2BQ13554 666 aa9.42□□□□□ -0.9
CHD8-212ENST00000557329 E2F4Q16254 413 aa9.42□□□□□ -0.9
CHD8-212ENST00000557329 PPP4R3BQ5MIZ7 849 aa9.39□□□□□ -0.91
CHD8-212ENST00000557329 DMRTA1Q5VZB9 504 aa9.39□□□□□ -0.91
CHD8-212ENST00000557329 ARIH1Q9Y4X5 557 aaPredicted RBP9.39□□□□□ -0.91
CHD8-212ENST00000557329 PSEN2P49810 448 aa9.38□□□□□ -0.91
CHD8-212ENST00000557329 OXER1Q8TDS5 423 aa9.37□□□□□ -0.91
CHD8-212ENST00000557329 MAP3K9P80192 1104 aa9.36□□□□□ -0.91
CHD8-212ENST00000557329 SPDYE16A6NNV3 312 aaPredicted RBP9.35□□□□□ -0.91
CHD8-212ENST00000557329 ARHGEF1Q92888 912 aaKnown RBP9.35□□□□□ -0.91
CHD8-212ENST00000557329 SLC24A1O60721 1099 aa9.33□□□□□ -0.92
CHD8-212ENST00000557329 KCNH8Q96L42 1107 aa9.33□□□□□ -0.92
CHD8-212ENST00000557329 STAC3Q96MF2 364 aa9.32□□□□□ -0.92
CHD8-212ENST00000557329 KCTD12Q96CX2 325 aaKnown RBP9.31□□□□□ -0.92
CHD8-212ENST00000557329 KCNK17Q96T54 332 aa9.3□□□□□ -0.92
CHD8-212ENST00000557329 UPF1Q92900 1129 aaKnown RBP eCLIP9.29□□□□□ -0.92
CHD8-212ENST00000557329 SLC4A5Q9BY07 1137 aa9.29□□□□□ -0.92
CHD8-212ENST00000557329 VPS9D1Q9Y2B5 631 aa9.29□□□□□ -0.92
CHD8-212ENST00000557329 ANO8Q9HCE9 1232 aaPredicted RBP9.28□□□□□ -0.92
CHD8-212ENST00000557329 EMILIN3Q9NT22 766 aa9.28□□□□□ -0.92
CHD8-212ENST00000557329 EVI5O60447 810 aa9.27□□□□□ -0.93
CHD8-212ENST00000557329 PDIA6Q15084 440 aa9.26□□□□□ -0.93
CHD8-212ENST00000557329 BCL2L12Q9HB09 334 aa9.26□□□□□ -0.93
CHD8-212ENST00000557329 KDM2AQ9Y2K7 1162 aa9.26□□□□□ -0.93
CHD8-212ENST00000557329 IFFO2Q5TF58 517 aa9.25□□□□□ -0.93
CHD8-212ENST00000557329 DPYSL4O14531 572 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms