RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 CDC42BPAQ5VT25 1732 aa17.95■□□□□ 0.46
SYNE2-227ENST00000557307 PREX2Q70Z35 1606 aa17.95■□□□□ 0.46
SYNE2-227ENST00000557307 ZFYVE16Q7Z3T8 1539 aa17.95■□□□□ 0.46
SYNE2-227ENST00000557307 CASKIN1Q8WXD9 1431 aa17.95■□□□□ 0.46
SYNE2-227ENST00000557307 POGZQ7Z3K3 1410 aa17.93■□□□□ 0.46
SYNE2-227ENST00000557307 PTPRMP28827 1452 aa17.92■□□□□ 0.46
SYNE2-227ENST00000557307 ARHGAP5Q13017 1502 aa17.92■□□□□ 0.46
SYNE2-227ENST00000557307 CLIP1P30622 1438 aa17.91■□□□□ 0.46
SYNE2-227ENST00000557307 SCAPERQ9BY12 1400 aa17.91■□□□□ 0.46
SYNE2-227ENST00000557307 FYCO1Q9BQS8 1478 aa17.91■□□□□ 0.46
SYNE2-227ENST00000557307 ITSN2Q9NZM3 1697 aa17.9■□□□□ 0.46
SYNE2-227ENST00000557307 CCDC18Q5T9S5 1454 aa17.9■□□□□ 0.46
SYNE2-227ENST00000557307 FER1L4A9Z1Z3 1794 aa17.89■□□□□ 0.45
SYNE2-227ENST00000557307 KDM5CP41229 1560 aa17.87■□□□□ 0.45
SYNE2-227ENST00000557307 ABCC1P33527 1531 aa17.86■□□□□ 0.45
SYNE2-227ENST00000557307 ARHGEF12Q9NZN5 1544 aa17.86■□□□□ 0.45
SYNE2-227ENST00000557307 ABCA6Q8N139 1617 aa17.86■□□□□ 0.45
SYNE2-227ENST00000557307 DIP2CQ9Y2E4 1556 aa17.84■□□□□ 0.45
SYNE2-227ENST00000557307 MAGI2Q86UL8 1455 aa17.84■□□□□ 0.45
SYNE2-227ENST00000557307 ARID4BQ4LE39 1312 aaPredicted RBP17.84■□□□□ 0.45
SYNE2-227ENST00000557307 CDK11AQ9UQ88 783 aaPredicted RBP17.83■□□□□ 0.44
SYNE2-227ENST00000557307 SAMD9LQ8IVG5 1584 aa17.83■□□□□ 0.44
SYNE2-227ENST00000557307 EFCAB2Q5VUJ9 269 aa17.81■□□□□ 0.44
SYNE2-227ENST00000557307 ZNF518AQ6AHZ1 1483 aa17.81■□□□□ 0.44
SYNE2-227ENST00000557307 KIDINS220Q9ULH0 1771 aa17.8■□□□□ 0.44
SYNE2-227ENST00000557307 TRAPPC8Q9Y2L5 1435 aa17.79■□□□□ 0.44
SYNE2-227ENST00000557307 C9orf84Q5VXU9 1444 aa17.78■□□□□ 0.44
SYNE2-227ENST00000557307 ATP10AO60312 1499 aa17.77■□□□□ 0.44
SYNE2-227ENST00000557307 LMTK3Q96Q04 1460 aa17.77■□□□□ 0.44
SYNE2-227ENST00000557307 AFAP1Q8N556 730 aa17.77■□□□□ 0.44
SYNE2-227ENST00000557307 CEP162Q5TB80 1403 aa17.77■□□□□ 0.44
SYNE2-227ENST00000557307 MLECQ14165 292 aa17.76■□□□□ 0.43
SYNE2-227ENST00000557307 SYCP2Q9BX26 1530 aa17.76■□□□□ 0.43
SYNE2-227ENST00000557307 GPATCH8Q9UKJ3 1502 aaKnown RBP17.75■□□□□ 0.43
SYNE2-227ENST00000557307 TIAM1Q13009 1591 aa17.74■□□□□ 0.43
SYNE2-227ENST00000557307 REREQ9P2R6 1566 aa17.74■□□□□ 0.43
SYNE2-227ENST00000557307 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
SYNE2-227ENST00000557307 MLH3Q9UHC1 1453 aa17.72■□□□□ 0.43
SYNE2-227ENST00000557307 EHBP1L1Q8N3D4 1523 aa17.7■□□□□ 0.42
SYNE2-227ENST00000557307 C3P01024 1663 aa17.69■□□□□ 0.42
SYNE2-227ENST00000557307 INO80Q9ULG1 1556 aaPredicted RBP17.69■□□□□ 0.42
SYNE2-227ENST00000557307 SUPT6HQ7KZ85 1726 aaKnown RBP17.68■□□□□ 0.42
SYNE2-227ENST00000557307 PREX1Q8TCU6 1659 aa17.67■□□□□ 0.42
SYNE2-227ENST00000557307 ZNF777Q9ULD5 760 aaPredicted RBP17.66■□□□□ 0.42
SYNE2-227ENST00000557307 LOC105371045A0A1W2PR82 267 aa17.65■□□□□ 0.42
SYNE2-227ENST00000557307 ILDR1Q86SU0 546 aaPredicted RBP17.65■□□□□ 0.42
SYNE2-227ENST00000557307 MTUS2Q5JR59 1369 aa17.65■□□□□ 0.42
SYNE2-227ENST00000557307 AGLP35573 1532 aa17.64■□□□□ 0.41
SYNE2-227ENST00000557307 ATP7AQ04656 1500 aa17.64■□□□□ 0.41
SYNE2-227ENST00000557307 HSPA2P54652 639 aa17.63■□□□□ 0.41
SYNE2-227ENST00000557307 MYT1LQ9UL68 1186 aa17.63■□□□□ 0.41
SYNE2-227ENST00000557307 PLXNC1O60486 1568 aa17.62■□□□□ 0.41
SYNE2-227ENST00000557307 CEBPAP49715 358 aaPredicted RBP17.62■□□□□ 0.41
SYNE2-227ENST00000557307 HNRNPMP52272 730 aaKnown RBP eCLIP17.62■□□□□ 0.41
SYNE2-227ENST00000557307 CCNB3Q8WWL7 1395 aa17.62■□□□□ 0.41
SYNE2-227ENST00000557307 ADGBQ8N7X0 1667 aa17.61■□□□□ 0.41
SYNE2-227ENST00000557307 ZNF644Q9H582 1327 aaPredicted RBP17.6■□□□□ 0.41
SYNE2-227ENST00000557307 STRCQ7RTU9 1775 aa17.58■□□□□ 0.41
SYNE2-227ENST00000557307 CLTCQ00610 1675 aaKnown RBP17.58■□□□□ 0.41
SYNE2-227ENST00000557307 NCOA2Q15596 1464 aa17.58■□□□□ 0.41
SYNE2-227ENST00000557307 MBD5Q9P267 1494 aa17.57■□□□□ 0.4
SYNE2-227ENST00000557307 KIAA1107Q9UPP5 1409 aa17.57■□□□□ 0.4
SYNE2-227ENST00000557307 MROH2AA6NES4 1674 aa17.57■□□□□ 0.4
SYNE2-227ENST00000557307 CFDP1Q9UEE9 299 aaPredicted RBP17.56■□□□□ 0.4
SYNE2-227ENST00000557307 PLEKHH2Q8IVE3 1493 aa17.56■□□□□ 0.4
SYNE2-227ENST00000557307 VPS8Q8N3P4 1428 aa17.55■□□□□ 0.4
SYNE2-227ENST00000557307 CAMSAP2Q08AD1 1489 aa17.55■□□□□ 0.4
SYNE2-227ENST00000557307 SPAG9O60271 1321 aaKnown RBP17.54■□□□□ 0.4
SYNE2-227ENST00000557307 A2MP01023 1474 aa17.52■□□□□ 0.4
SYNE2-227ENST00000557307 LRRC9Q6ZRR7 1453 aa17.51■□□□□ 0.39
SYNE2-227ENST00000557307 SETD1BQ9UPS6 1966 aaKnown RBP17.49■□□□□ 0.39
SYNE2-227ENST00000557307 UHRF1BP1Q6BDS2 1440 aa17.47■□□□□ 0.39
SYNE2-227ENST00000557307 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
SYNE2-227ENST00000557307 CCDC141Q6ZP82 1450 aa17.47■□□□□ 0.39
SYNE2-227ENST00000557307 ARHGEF5Q12774 1597 aa17.46■□□□□ 0.39
SYNE2-227ENST00000557307 KANK4Q5T7N3 995 aaPredicted RBP17.45■□□□□ 0.38
SYNE2-227ENST00000557307 ZNF142P52746 1687 aaPredicted RBP17.45■□□□□ 0.38
SYNE2-227ENST00000557307 CNTLNQ9NXG0 1405 aa17.44■□□□□ 0.38
SYNE2-227ENST00000557307 MAP3K1Q13233 1512 aa17.43■□□□□ 0.38
SYNE2-227ENST00000557307 RTEL1-TNFRSF6BF6WH68 1400 aa17.42■□□□□ 0.38
SYNE2-227ENST00000557307 CROCC2H7BZ55 1655 aa17.4■□□□□ 0.38
SYNE2-227ENST00000557307 MAST1Q9Y2H9 1570 aa17.4■□□□□ 0.38
SYNE2-227ENST00000557307 ZMYM3Q14202 1370 aa17.4■□□□□ 0.38
SYNE2-227ENST00000557307 CAMSAP1Q5T5Y3 1602 aa17.39■□□□□ 0.37
SYNE2-227ENST00000557307 GGT6Q6P531 493 aa17.38■□□□□ 0.37
SYNE2-227ENST00000557307 ESF1Q9H501 851 aaKnown RBP17.38■□□□□ 0.37
SYNE2-227ENST00000557307 PTPRKQ15262 1439 aa17.38■□□□□ 0.37
SYNE2-227ENST00000557307 CEP170BQ9Y4F5 1589 aaPredicted RBP17.37■□□□□ 0.37
SYNE2-227ENST00000557307 DHX29Q7Z478 1369 aaKnown RBP17.37■□□□□ 0.37
SYNE2-227ENST00000557307 NPATQ14207 1427 aa17.37■□□□□ 0.37
SYNE2-227ENST00000557307 FBXO41Q8TF61 875 aa17.36■□□□□ 0.37
SYNE2-227ENST00000557307 MYOM3Q5VTT5 1437 aa17.36■□□□□ 0.37
SYNE2-227ENST00000557307 MROH1Q8NDA8 1641 aa17.36■□□□□ 0.37
SYNE2-227ENST00000557307 NCOA1Q15788 1441 aa17.35■□□□□ 0.37
SYNE2-227ENST00000557307 RNF17Q9BXT8 1623 aaKnown RBP17.35■□□□□ 0.37
SYNE2-227ENST00000557307 CEP152O94986 1710 aa17.35■□□□□ 0.37
SYNE2-227ENST00000557307 KDM5DQ9BY66 1539 aa17.34■□□□□ 0.37
SYNE2-227ENST00000557307 PTPN23Q9H3S7 1636 aa17.34■□□□□ 0.37
SYNE2-227ENST00000557307 EIF2AK4Q9P2K8 1649 aaKnown RBP17.32■□□□□ 0.36
SYNE2-227ENST00000557307 DNMT1P26358 1616 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms