RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ARAP3Q8WWN8 1544 aa19.88■□□□□ 0.77
SHMT2-227ENST00000557269 TEX14Q8IWB6 1497 aa19.88■□□□□ 0.77
SHMT2-227ENST00000557269 EFCAB2Q5VUJ9 269 aa19.87■□□□□ 0.77
SHMT2-227ENST00000557269 CFDP1Q9UEE9 299 aaPredicted RBP19.87■□□□□ 0.77
SHMT2-227ENST00000557269 MYOM3Q5VTT5 1437 aa19.86■□□□□ 0.77
SHMT2-227ENST00000557269 ZNF644Q9H582 1327 aaPredicted RBP19.86■□□□□ 0.77
SHMT2-227ENST00000557269 ZNF777Q9ULD5 760 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-227ENST00000557269 NEO1Q92859 1461 aa19.85■□□□□ 0.77
SHMT2-227ENST00000557269 AKNAQ7Z591 1439 aa19.85■□□□□ 0.77
SHMT2-227ENST00000557269 ITSN2Q9NZM3 1697 aa19.84■□□□□ 0.77
SHMT2-227ENST00000557269 COL17A1Q9UMD9 1497 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-227ENST00000557269 SAMD9LQ8IVG5 1584 aa19.83■□□□□ 0.76
SHMT2-227ENST00000557269 CFAP74Q9C0B2 1584 aa19.8■□□□□ 0.76
SHMT2-227ENST00000557269 ARHGEF12Q9NZN5 1544 aa19.8■□□□□ 0.76
SHMT2-227ENST00000557269 FGD6Q6ZV73 1430 aa19.79■□□□□ 0.76
SHMT2-227ENST00000557269 MIA2Q96PC5 1412 aa19.79■□□□□ 0.76
SHMT2-227ENST00000557269 ADGRL1O94910 1474 aa19.79■□□□□ 0.76
SHMT2-227ENST00000557269 SCAPERQ9BY12 1400 aa19.78■□□□□ 0.76
SHMT2-227ENST00000557269 CAMSAP2Q08AD1 1489 aa19.77■□□□□ 0.76
SHMT2-227ENST00000557269 ABCC1P33527 1531 aa19.76■□□□□ 0.75
SHMT2-227ENST00000557269 RAPGEF3O95398 923 aa19.76■□□□□ 0.75
SHMT2-227ENST00000557269 HNRNPMP52272 730 aaKnown RBP eCLIP19.76■□□□□ 0.75
SHMT2-227ENST00000557269 PTPN23Q9H3S7 1636 aa19.74■□□□□ 0.75
SHMT2-227ENST00000557269 SYCP2Q9BX26 1530 aa19.74■□□□□ 0.75
SHMT2-227ENST00000557269 TRAPPC8Q9Y2L5 1435 aa19.74■□□□□ 0.75
SHMT2-227ENST00000557269 KDM6BO15054 1643 aa19.73■□□□□ 0.75
SHMT2-227ENST00000557269 KIAA1107Q9UPP5 1409 aa19.73■□□□□ 0.75
SHMT2-227ENST00000557269 DENND4BO75064 1496 aaPredicted RBP19.73■□□□□ 0.75
SHMT2-227ENST00000557269 TCOF1Q13428 1488 aaKnown RBP19.73■□□□□ 0.75
SHMT2-227ENST00000557269 MBD5Q9P267 1494 aa19.73■□□□□ 0.75
SHMT2-227ENST00000557269 FRMPD1Q5SYB0 1578 aa19.72■□□□□ 0.75
SHMT2-227ENST00000557269 AFAP1Q8N556 730 aa19.72■□□□□ 0.75
SHMT2-227ENST00000557269 PLEKHH2Q8IVE3 1493 aa19.72■□□□□ 0.75
SHMT2-227ENST00000557269 POGZQ7Z3K3 1410 aa19.7■□□□□ 0.74
SHMT2-227ENST00000557269 FAM50AQ14320 339 aaKnown RBP19.7■□□□□ 0.74
SHMT2-227ENST00000557269 RICTORQ6R327 1708 aa19.69■□□□□ 0.74
SHMT2-227ENST00000557269 RRBP1Q9P2E9 1410 aaKnown RBP19.68■□□□□ 0.74
SHMT2-227ENST00000557269 ZNF518AQ6AHZ1 1483 aa19.65■□□□□ 0.74
SHMT2-227ENST00000557269 ARHGEF5Q12774 1597 aa19.64■□□□□ 0.73
SHMT2-227ENST00000557269 KDM5CP41229 1560 aa19.63■□□□□ 0.73
SHMT2-227ENST00000557269 ABCC5O15440 1437 aa19.63■□□□□ 0.73
SHMT2-227ENST00000557269 CCDC141Q6ZP82 1450 aa19.62■□□□□ 0.73
SHMT2-227ENST00000557269 ZMYM4Q5VZL5 1548 aa19.61■□□□□ 0.73
SHMT2-227ENST00000557269 DAPK1P53355 1430 aa19.6■□□□□ 0.73
SHMT2-227ENST00000557269 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.6■□□□□ 0.73
SHMT2-227ENST00000557269 RSPH4AQ5TD94 716 aa19.6■□□□□ 0.73
SHMT2-227ENST00000557269 DNMT1P26358 1616 aaKnown RBP19.6■□□□□ 0.73
SHMT2-227ENST00000557269 SPAG9O60271 1321 aaKnown RBP19.59■□□□□ 0.73
SHMT2-227ENST00000557269 PTPRKQ15262 1439 aa19.59■□□□□ 0.73
SHMT2-227ENST00000557269 YEATS2Q9ULM3 1422 aa19.59■□□□□ 0.73
SHMT2-227ENST00000557269 ITGAEP38570 1179 aa19.58■□□□□ 0.72
SHMT2-227ENST00000557269 MLH3Q9UHC1 1453 aa19.58■□□□□ 0.72
SHMT2-227ENST00000557269 MYT1LQ9UL68 1186 aa19.56■□□□□ 0.72
SHMT2-227ENST00000557269 KIDINS220Q9ULH0 1771 aa19.56■□□□□ 0.72
SHMT2-227ENST00000557269 HECW2Q9P2P5 1572 aa19.56■□□□□ 0.72
SHMT2-227ENST00000557269 INO80Q9ULG1 1556 aaPredicted RBP19.56■□□□□ 0.72
SHMT2-227ENST00000557269 CROCC2H7BZ55 1655 aa19.56■□□□□ 0.72
SHMT2-227ENST00000557269 TSPY4P0CV99 314 aa19.55■□□□□ 0.72
SHMT2-227ENST00000557269 TSPY10P0CW01 314 aa19.55■□□□□ 0.72
SHMT2-227ENST00000557269 C9orf84Q5VXU9 1444 aa19.55■□□□□ 0.72
SHMT2-227ENST00000557269 CHIC2Q9UKJ5 165 aa19.55■□□□□ 0.72
SHMT2-227ENST00000557269 ATP7AQ04656 1500 aa19.55■□□□□ 0.72
SHMT2-227ENST00000557269 ZFYVE16Q7Z3T8 1539 aa19.55■□□□□ 0.72
SHMT2-227ENST00000557269 MAGI2Q86UL8 1455 aa19.54■□□□□ 0.72
SHMT2-227ENST00000557269 MAST1Q9Y2H9 1570 aa19.53■□□□□ 0.72
SHMT2-227ENST00000557269 RTEL1-TNFRSF6BF6WH68 1400 aa19.52■□□□□ 0.72
SHMT2-227ENST00000557269 SHANK2Q9UPX8 1470 aa19.52■□□□□ 0.72
SHMT2-227ENST00000557269 ABCA6Q8N139 1617 aa19.51■□□□□ 0.71
SHMT2-227ENST00000557269 DIP2CQ9Y2E4 1556 aa19.51■□□□□ 0.71
SHMT2-227ENST00000557269 ARHGEF40Q8TER5 1519 aa19.5■□□□□ 0.71
SHMT2-227ENST00000557269 ATP10AO60312 1499 aa19.48■□□□□ 0.71
SHMT2-227ENST00000557269 RRP7BPQ9NSQ0 103 aa19.47■□□□□ 0.71
SHMT2-227ENST00000557269 SIGLEC1Q9BZZ2 1709 aa19.46■□□□□ 0.71
SHMT2-227ENST00000557269 NCOA1Q15788 1441 aa19.46■□□□□ 0.71
SHMT2-227ENST00000557269 ADGRL2O95490 1459 aa19.46■□□□□ 0.71
SHMT2-227ENST00000557269 ADGBQ8N7X0 1667 aa19.45■□□□□ 0.7
SHMT2-227ENST00000557269 ANKRD30AQ9BXX3 1397 aa19.44■□□□□ 0.7
SHMT2-227ENST00000557269 PLXNC1O60486 1568 aa19.44■□□□□ 0.7
SHMT2-227ENST00000557269 ROCK1Q13464 1354 aa19.43■□□□□ 0.7
SHMT2-227ENST00000557269 KIF15Q9NS87 1388 aa19.43■□□□□ 0.7
SHMT2-227ENST00000557269 A2MP01023 1474 aa19.42■□□□□ 0.7
SHMT2-227ENST00000557269 DHX29Q7Z478 1369 aaKnown RBP19.41■□□□□ 0.7
SHMT2-227ENST00000557269 REREQ9P2R6 1566 aa19.4■□□□□ 0.7
SHMT2-227ENST00000557269 TRIM26Q12899 539 aaPredicted RBP19.39■□□□□ 0.69
SHMT2-227ENST00000557269 DUOX2Q9NRD8 1548 aa19.37■□□□□ 0.69
SHMT2-227ENST00000557269 ARID4BQ4LE39 1312 aaPredicted RBP19.36■□□□□ 0.69
SHMT2-227ENST00000557269 AGLP35573 1532 aa19.35■□□□□ 0.69
SHMT2-227ENST00000557269 NAIPQ13075 1403 aa19.34■□□□□ 0.69
SHMT2-227ENST00000557269 KIF3BO15066 747 aa19.33■□□□□ 0.68
SHMT2-227ENST00000557269 HFM1A2PYH4 1435 aa19.33■□□□□ 0.68
SHMT2-227ENST00000557269 ANKRD50Q9ULJ7 1429 aa19.33■□□□□ 0.68
SHMT2-227ENST00000557269 MLECQ14165 292 aa19.32■□□□□ 0.68
SHMT2-227ENST00000557269 ERBINQ96RT1 1412 aa19.32■□□□□ 0.68
SHMT2-227ENST00000557269 GCC2Q8IWJ2 1684 aa19.29■□□□□ 0.68
SHMT2-227ENST00000557269 BCORL1Q5H9F3 1711 aa19.28■□□□□ 0.68
SHMT2-227ENST00000557269 GGT6Q6P531 493 aa19.28■□□□□ 0.68
SHMT2-227ENST00000557269 EIF2AK4Q9P2K8 1649 aaKnown RBP19.28■□□□□ 0.68
SHMT2-227ENST00000557269 MROH1Q8NDA8 1641 aa19.25■□□□□ 0.67
SHMT2-227ENST00000557269 RNF17Q9BXT8 1623 aaKnown RBP19.25■□□□□ 0.67
SHMT2-227ENST00000557269 SETD5Q9C0A6 1442 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms