RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 RAPGEF3O95398 923 aa36.33■■■■□ 3.41
TDP1-216ENST00000556867 ADGRL1O94910 1474 aa36.32■■■■□ 3.41
TDP1-216ENST00000556867 CDC42BPAQ5VT25 1732 aa36.32■■■■□ 3.4
TDP1-216ENST00000556867 TIAM1Q13009 1591 aa36.32■■■■□ 3.4
TDP1-216ENST00000556867 SCAPERQ9BY12 1400 aa36.25■■■■□ 3.39
TDP1-216ENST00000556867 ZMYM4Q5VZL5 1548 aa36.24■■■■□ 3.39
TDP1-216ENST00000556867 POGZQ7Z3K3 1410 aa36.23■■■■□ 3.39
TDP1-216ENST00000556867 MAP3K1Q13233 1512 aa36.23■■■■□ 3.39
TDP1-216ENST00000556867 GPATCH8Q9UKJ3 1502 aaKnown RBP36.22■■■■□ 3.39
TDP1-216ENST00000556867 CCNB3Q8WWL7 1395 aa36.16■■■■□ 3.38
TDP1-216ENST00000556867 ABCC1P33527 1531 aa36.16■■■■□ 3.38
TDP1-216ENST00000556867 SUPT6HQ7KZ85 1726 aaKnown RBP36.16■■■■□ 3.38
TDP1-216ENST00000556867 ARHGEF40Q8TER5 1519 aa36.15■■■■□ 3.38
TDP1-216ENST00000556867 LRRC9Q6ZRR7 1453 aa36.14■■■■□ 3.38
TDP1-216ENST00000556867 ZNF518AQ6AHZ1 1483 aa36.11■■■■□ 3.37
TDP1-216ENST00000556867 MAGI2Q86UL8 1455 aa36.11■■■■□ 3.37
TDP1-216ENST00000556867 ITSN2Q9NZM3 1697 aa36.11■■■■□ 3.37
TDP1-216ENST00000556867 SAMD9LQ8IVG5 1584 aa36.1■■■■□ 3.37
TDP1-216ENST00000556867 NCOA2Q15596 1464 aa36.09■■■■□ 3.37
TDP1-216ENST00000556867 KDM5CP41229 1560 aa36.09■■■■□ 3.37
TDP1-216ENST00000556867 KDM4FA0A1W2PPD8 638 aa36.08■■■■□ 3.37
TDP1-216ENST00000556867 ZFYVE16Q7Z3T8 1539 aa36.08■■■■□ 3.37
TDP1-216ENST00000556867 ARHGEF12Q9NZN5 1544 aa36.07■■■■□ 3.36
TDP1-216ENST00000556867 CFDP1Q9UEE9 299 aaPredicted RBP36.05■■■■□ 3.36
TDP1-216ENST00000556867 YEATS2Q9ULM3 1422 aa36.02■■■■□ 3.36
TDP1-216ENST00000556867 AEBP2Q6ZN18 517 aaPredicted RBP36.02■■■■□ 3.36
TDP1-216ENST00000556867 TRAPPC8Q9Y2L5 1435 aa36■■■■□ 3.35
TDP1-216ENST00000556867 PLEKHH2Q8IVE3 1493 aa36■■■■□ 3.35
TDP1-216ENST00000556867 ZNF777Q9ULD5 760 aaPredicted RBP36■■■■□ 3.35
TDP1-216ENST00000556867 SYCP2Q9BX26 1530 aa35.99■■■■□ 3.35
TDP1-216ENST00000556867 KANK4Q5T7N3 995 aaPredicted RBP35.99■■■■□ 3.35
TDP1-216ENST00000556867 AFAP1Q8N556 730 aa35.99■■■■□ 3.35
TDP1-216ENST00000556867 HECW2Q9P2P5 1572 aa35.98■■■■□ 3.35
TDP1-216ENST00000556867 KIAA1107Q9UPP5 1409 aa35.98■■■■□ 3.35
TDP1-216ENST00000556867 APLP2Q06481 763 aa35.96■■■■□ 3.35
TDP1-216ENST00000556867 MLH3Q9UHC1 1453 aa35.93■■■■□ 3.34
TDP1-216ENST00000556867 ATP10AO60312 1499 aa35.88■■■■□ 3.33
TDP1-216ENST00000556867 SIGLEC1Q9BZZ2 1709 aa35.87■■■■□ 3.33
TDP1-216ENST00000556867 BCORL1Q5H9F3 1711 aa35.86■■■■□ 3.33
TDP1-216ENST00000556867 DIP2CQ9Y2E4 1556 aa35.86■■■■□ 3.33
TDP1-216ENST00000556867 C9orf84Q5VXU9 1444 aa35.86■■■■□ 3.33
TDP1-216ENST00000556867 HNRNPMP52272 730 aaKnown RBP eCLIP35.86■■■■□ 3.33
TDP1-216ENST00000556867 ZNF644Q9H582 1327 aaPredicted RBP35.85■■■■□ 3.33
TDP1-216ENST00000556867 KIDINS220Q9ULH0 1771 aa35.85■■■■□ 3.33
TDP1-216ENST00000556867 ABCA6Q8N139 1617 aa35.84■■■■□ 3.33
TDP1-216ENST00000556867 ADAMTSL3P82987 1691 aa35.84■■■■□ 3.33
TDP1-216ENST00000556867 CAMSAP2Q08AD1 1489 aa35.83■■■■□ 3.33
TDP1-216ENST00000556867 ARID4BQ4LE39 1312 aaPredicted RBP35.83■■■■□ 3.33
TDP1-216ENST00000556867 MBD5Q9P267 1494 aa35.82■■■■□ 3.32
TDP1-216ENST00000556867 REREQ9P2R6 1566 aa35.81■■■■□ 3.32
TDP1-216ENST00000556867 MYOM3Q5VTT5 1437 aa35.8■■■■□ 3.32
TDP1-216ENST00000556867 MYT1LQ9UL68 1186 aa35.79■■■■□ 3.32
TDP1-216ENST00000556867 INO80Q9ULG1 1556 aaPredicted RBP35.77■■■■□ 3.32
TDP1-216ENST00000556867 SPAG9O60271 1321 aaKnown RBP35.77■■■■□ 3.32
TDP1-216ENST00000556867 MIA2Q96PC5 1412 aa35.75■■■■□ 3.31
TDP1-216ENST00000556867 ATP7AQ04656 1500 aa35.75■■■■□ 3.31
TDP1-216ENST00000556867 CCDC141Q6ZP82 1450 aa35.71■■■■□ 3.31
TDP1-216ENST00000556867 ARHGEF5Q12774 1597 aa35.7■■■■□ 3.31
TDP1-216ENST00000556867 MADDQ8WXG6 1647 aa35.7■■■■□ 3.31
TDP1-216ENST00000556867 AGLP35573 1532 aa35.67■■■■□ 3.3
TDP1-216ENST00000556867 RSPH4AQ5TD94 716 aa35.66■■■■□ 3.3
TDP1-216ENST00000556867 RTEL1-TNFRSF6BF6WH68 1400 aa35.64■■■■□ 3.3
TDP1-216ENST00000556867 PTPRMP28827 1452 aa35.6■■■■□ 3.29
TDP1-216ENST00000556867 RIMS1Q86UR5 1692 aaKnown RBP35.59■■■■□ 3.29
TDP1-216ENST00000556867 PTPN23Q9H3S7 1636 aa35.59■■■■□ 3.29
TDP1-216ENST00000556867 ADGBQ8N7X0 1667 aa35.59■■■■□ 3.29
TDP1-216ENST00000556867 FER1L4A9Z1Z3 1794 aa35.59■■■■□ 3.29
TDP1-216ENST00000556867 FGD6Q6ZV73 1430 aa35.58■■■■□ 3.29
TDP1-216ENST00000556867 PLXNC1O60486 1568 aa35.58■■■■□ 3.29
TDP1-216ENST00000556867 MLECQ14165 292 aa35.57■■■■□ 3.28
TDP1-216ENST00000556867 A2MP01023 1474 aa35.55■■■■□ 3.28
TDP1-216ENST00000556867 TCOF1Q13428 1488 aaKnown RBP35.54■■■■□ 3.28
TDP1-216ENST00000556867 MAST1Q9Y2H9 1570 aa35.52■■■■□ 3.28
TDP1-216ENST00000556867 TSPY4P0CV99 314 aa35.48■■■■□ 3.27
TDP1-216ENST00000556867 TSPY10P0CW01 314 aa35.48■■■■□ 3.27
TDP1-216ENST00000556867 CROCC2H7BZ55 1655 aa35.44■■■■□ 3.26
TDP1-216ENST00000556867 DNMT1P26358 1616 aaKnown RBP35.43■■■■□ 3.26
TDP1-216ENST00000556867 SHANK2Q9UPX8 1470 aa35.41■■■■□ 3.26
TDP1-216ENST00000556867 DHX29Q7Z478 1369 aaKnown RBP35.41■■■■□ 3.26
TDP1-216ENST00000556867 ABCC5O15440 1437 aa35.4■■■■□ 3.26
TDP1-216ENST00000556867 DAPK1P53355 1430 aa35.37■■■■□ 3.25
TDP1-216ENST00000556867 CNTLNQ9NXG0 1405 aa35.32■■■■□ 3.25
TDP1-216ENST00000556867 MROH2AA6NES4 1674 aa35.28■■■■□ 3.24
TDP1-216ENST00000556867 PPARGC1BQ86YN6 1023 aaKnown RBP35.28■■■■□ 3.24
TDP1-216ENST00000556867 ESF1Q9H501 851 aaKnown RBP35.28■■■■□ 3.24
TDP1-216ENST00000556867 C3P01024 1663 aa35.27■■■■□ 3.24
TDP1-216ENST00000556867 FAM50AQ14320 339 aaKnown RBP35.25■■■■□ 3.23
TDP1-216ENST00000556867 DUOX2Q9NRD8 1548 aa35.24■■■■□ 3.23
TDP1-216ENST00000556867 GGT6Q6P531 493 aa35.24■■■■□ 3.23
TDP1-216ENST00000556867 EIF2AK4Q9P2K8 1649 aaKnown RBP35.24■■■■□ 3.23
TDP1-216ENST00000556867 PLPPR3Q6T4P5 718 aa35.23■■■■□ 3.23
TDP1-216ENST00000556867 PPP6R1Q9UPN7 881 aa35.23■■■■□ 3.23
TDP1-216ENST00000556867 CLTCQ00610 1675 aaKnown RBP35.22■■■■□ 3.23
TDP1-216ENST00000556867 KIF3BO15066 747 aa35.22■■■■□ 3.23
TDP1-216ENST00000556867 KIF15Q9NS87 1388 aa35.21■■■■□ 3.23
TDP1-216ENST00000556867 CEBPAP49715 358 aaPredicted RBP35.2■■■■□ 3.23
TDP1-216ENST00000556867 RNF17Q9BXT8 1623 aaKnown RBP35.19■■■■□ 3.22
TDP1-216ENST00000556867 FAM135AQ9P2D6 1515 aa35.19■■■■□ 3.22
TDP1-216ENST00000556867 ADGRL2O95490 1459 aa35.17■■■■□ 3.22
TDP1-216ENST00000556867 LMTK3Q96Q04 1460 aa35.16■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms