RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 KANK4Q5T7N3 995 aaPredicted RBP27.49■■□□□ 1.99
SHMT2-225ENST00000556798 NCOA2Q15596 1464 aa27.46■■□□□ 1.99
SHMT2-225ENST00000556798 ITSN2Q9NZM3 1697 aa27.46■■□□□ 1.99
SHMT2-225ENST00000556798 GPATCH8Q9UKJ3 1502 aaKnown RBP27.45■■□□□ 1.98
SHMT2-225ENST00000556798 AKNAQ7Z591 1439 aa27.44■■□□□ 1.98
SHMT2-225ENST00000556798 CCNB3Q8WWL7 1395 aa27.42■■□□□ 1.98
SHMT2-225ENST00000556798 PHLDB1Q86UU1 1377 aa27.41■■□□□ 1.98
SHMT2-225ENST00000556798 FRMPD1Q5SYB0 1578 aa27.39■■□□□ 1.98
SHMT2-225ENST00000556798 ADGRL1O94910 1474 aa27.39■■□□□ 1.98
SHMT2-225ENST00000556798 RICTORQ6R327 1708 aa27.39■■□□□ 1.98
SHMT2-225ENST00000556798 EFCAB2Q5VUJ9 269 aa27.39■■□□□ 1.98
SHMT2-225ENST00000556798 SAMD9LQ8IVG5 1584 aa27.37■■□□□ 1.97
SHMT2-225ENST00000556798 ABCC1P33527 1531 aa27.35■■□□□ 1.97
SHMT2-225ENST00000556798 DENND4BO75064 1496 aaPredicted RBP27.33■■□□□ 1.97
SHMT2-225ENST00000556798 RAPGEF3O95398 923 aa27.32■■□□□ 1.96
SHMT2-225ENST00000556798 SCAPERQ9BY12 1400 aa27.32■■□□□ 1.96
SHMT2-225ENST00000556798 CFDP1Q9UEE9 299 aaPredicted RBP27.31■■□□□ 1.96
SHMT2-225ENST00000556798 ZNF777Q9ULD5 760 aaPredicted RBP27.31■■□□□ 1.96
SHMT2-225ENST00000556798 POGZQ7Z3K3 1410 aa27.28■■□□□ 1.96
SHMT2-225ENST00000556798 SYCP2Q9BX26 1530 aa27.27■■□□□ 1.96
SHMT2-225ENST00000556798 ARHGEF12Q9NZN5 1544 aa27.27■■□□□ 1.96
SHMT2-225ENST00000556798 MYOM3Q5VTT5 1437 aa27.24■■□□□ 1.95
SHMT2-225ENST00000556798 ZMYM4Q5VZL5 1548 aa27.23■■□□□ 1.95
SHMT2-225ENST00000556798 PPARGC1BQ86YN6 1023 aaKnown RBP27.23■■□□□ 1.95
SHMT2-225ENST00000556798 ZNF644Q9H582 1327 aaPredicted RBP27.22■■□□□ 1.95
SHMT2-225ENST00000556798 CAMSAP2Q08AD1 1489 aa27.21■■□□□ 1.95
SHMT2-225ENST00000556798 PLEKHH2Q8IVE3 1493 aa27.2■■□□□ 1.95
SHMT2-225ENST00000556798 KDM5CP41229 1560 aa27.2■■□□□ 1.94
SHMT2-225ENST00000556798 TRAPPC8Q9Y2L5 1435 aa27.2■■□□□ 1.94
SHMT2-225ENST00000556798 ZNF518AQ6AHZ1 1483 aa27.19■■□□□ 1.94
SHMT2-225ENST00000556798 KIAA1107Q9UPP5 1409 aa27.16■■□□□ 1.94
SHMT2-225ENST00000556798 ARHGEF40Q8TER5 1519 aa27.16■■□□□ 1.94
SHMT2-225ENST00000556798 HECW2Q9P2P5 1572 aa27.16■■□□□ 1.94
SHMT2-225ENST00000556798 PTPN23Q9H3S7 1636 aa27.16■■□□□ 1.94
SHMT2-225ENST00000556798 HNRNPMP52272 730 aaKnown RBP eCLIP27.15■■□□□ 1.94
SHMT2-225ENST00000556798 AFAP1Q8N556 730 aa27.15■■□□□ 1.94
SHMT2-225ENST00000556798 MIA2Q96PC5 1412 aa27.15■■□□□ 1.94
SHMT2-225ENST00000556798 ZFYVE16Q7Z3T8 1539 aa27.14■■□□□ 1.94
SHMT2-225ENST00000556798 FGD6Q6ZV73 1430 aa27.11■■□□□ 1.93
SHMT2-225ENST00000556798 YEATS2Q9ULM3 1422 aa27.11■■□□□ 1.93
SHMT2-225ENST00000556798 MBD5Q9P267 1494 aa27.11■■□□□ 1.93
SHMT2-225ENST00000556798 KIDINS220Q9ULH0 1771 aa27.09■■□□□ 1.93
SHMT2-225ENST00000556798 MAGI2Q86UL8 1455 aa27.09■■□□□ 1.93
SHMT2-225ENST00000556798 ARHGEF5Q12774 1597 aa27.08■■□□□ 1.93
SHMT2-225ENST00000556798 ABCA6Q8N139 1617 aa27.08■■□□□ 1.93
SHMT2-225ENST00000556798 INO80Q9ULG1 1556 aaPredicted RBP27.06■■□□□ 1.92
SHMT2-225ENST00000556798 CCDC141Q6ZP82 1450 aa27.06■■□□□ 1.92
SHMT2-225ENST00000556798 MLH3Q9UHC1 1453 aa27.06■■□□□ 1.92
SHMT2-225ENST00000556798 MYT1LQ9UL68 1186 aa27.05■■□□□ 1.92
SHMT2-225ENST00000556798 DIP2CQ9Y2E4 1556 aa27.05■■□□□ 1.92
SHMT2-225ENST00000556798 SIGLEC1Q9BZZ2 1709 aa27.04■■□□□ 1.92
SHMT2-225ENST00000556798 TCOF1Q13428 1488 aaKnown RBP27.04■■□□□ 1.92
SHMT2-225ENST00000556798 ATP7AQ04656 1500 aa27.03■■□□□ 1.92
SHMT2-225ENST00000556798 CROCC2H7BZ55 1655 aa27.01■■□□□ 1.92
SHMT2-225ENST00000556798 SPAG9O60271 1321 aaKnown RBP27■■□□□ 1.91
SHMT2-225ENST00000556798 DNMT1P26358 1616 aaKnown RBP26.98■■□□□ 1.91
SHMT2-225ENST00000556798 ATP10AO60312 1499 aa26.97■■□□□ 1.91
SHMT2-225ENST00000556798 ADGBQ8N7X0 1667 aa26.95■■□□□ 1.91
SHMT2-225ENST00000556798 C9orf84Q5VXU9 1444 aa26.95■■□□□ 1.9
SHMT2-225ENST00000556798 MAST1Q9Y2H9 1570 aa26.93■■□□□ 1.9
SHMT2-225ENST00000556798 FAM50AQ14320 339 aaKnown RBP26.93■■□□□ 1.9
SHMT2-225ENST00000556798 RSPH4AQ5TD94 716 aa26.93■■□□□ 1.9
SHMT2-225ENST00000556798 REREQ9P2R6 1566 aa26.92■■□□□ 1.9
SHMT2-225ENST00000556798 ABCC5O15440 1437 aa26.9■■□□□ 1.9
SHMT2-225ENST00000556798 DAPK1P53355 1430 aa26.9■■□□□ 1.9
SHMT2-225ENST00000556798 BCORL1Q5H9F3 1711 aa26.9■■□□□ 1.9
SHMT2-225ENST00000556798 RTEL1-TNFRSF6BF6WH68 1400 aa26.9■■□□□ 1.9
SHMT2-225ENST00000556798 ARID4BQ4LE39 1312 aaPredicted RBP26.89■■□□□ 1.89
SHMT2-225ENST00000556798 TSPY4P0CV99 314 aa26.87■■□□□ 1.89
SHMT2-225ENST00000556798 TSPY10P0CW01 314 aa26.87■■□□□ 1.89
SHMT2-225ENST00000556798 SHANK2Q9UPX8 1470 aa26.87■■□□□ 1.89
SHMT2-225ENST00000556798 PLXNC1O60486 1568 aa26.85■■□□□ 1.89
SHMT2-225ENST00000556798 RRBP1Q9P2E9 1410 aaKnown RBP26.84■■□□□ 1.89
SHMT2-225ENST00000556798 A2MP01023 1474 aa26.83■■□□□ 1.89
SHMT2-225ENST00000556798 ADAMTSL3P82987 1691 aa26.82■■□□□ 1.88
SHMT2-225ENST00000556798 KDM4FA0A1W2PPD8 638 aa26.81■■□□□ 1.88
SHMT2-225ENST00000556798 AGLP35573 1532 aa26.8■■□□□ 1.88
SHMT2-225ENST00000556798 MADDQ8WXG6 1647 aa26.79■■□□□ 1.88
SHMT2-225ENST00000556798 MLECQ14165 292 aa26.78■■□□□ 1.88
SHMT2-225ENST00000556798 FER1L4A9Z1Z3 1794 aa26.78■■□□□ 1.88
SHMT2-225ENST00000556798 CHIC2Q9UKJ5 165 aa26.77■■□□□ 1.88
SHMT2-225ENST00000556798 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.76■■□□□ 1.87
SHMT2-225ENST00000556798 PTPRKQ15262 1439 aa26.75■■□□□ 1.87
SHMT2-225ENST00000556798 RIMS1Q86UR5 1692 aaKnown RBP26.75■■□□□ 1.87
SHMT2-225ENST00000556798 ITGAEP38570 1179 aa26.73■■□□□ 1.87
SHMT2-225ENST00000556798 DHX29Q7Z478 1369 aaKnown RBP26.72■■□□□ 1.87
SHMT2-225ENST00000556798 ADGRL2O95490 1459 aa26.71■■□□□ 1.87
SHMT2-225ENST00000556798 KIF15Q9NS87 1388 aa26.71■■□□□ 1.87
SHMT2-225ENST00000556798 DUOX2Q9NRD8 1548 aa26.7■■□□□ 1.87
SHMT2-225ENST00000556798 RRP7BPQ9NSQ0 103 aa26.69■■□□□ 1.86
SHMT2-225ENST00000556798 ANKRD30AQ9BXX3 1397 aa26.69■■□□□ 1.86
SHMT2-225ENST00000556798 EIF2AK4Q9P2K8 1649 aaKnown RBP26.68■■□□□ 1.86
SHMT2-225ENST00000556798 NCOA1Q15788 1441 aa26.67■■□□□ 1.86
SHMT2-225ENST00000556798 RNF17Q9BXT8 1623 aaKnown RBP26.63■■□□□ 1.85
SHMT2-225ENST00000556798 KIF3BO15066 747 aa26.62■■□□□ 1.85
SHMT2-225ENST00000556798 CLTCQ00610 1675 aaKnown RBP26.62■■□□□ 1.85
SHMT2-225ENST00000556798 ERBINQ96RT1 1412 aa26.61■■□□□ 1.85
SHMT2-225ENST00000556798 GGT6Q6P531 493 aa26.6■■□□□ 1.85
SHMT2-225ENST00000556798 PTPRMP28827 1452 aa26.6■■□□□ 1.85
SHMT2-225ENST00000556798 ROCK1Q13464 1354 aa26.58■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms