RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	ABCB7	O75027	752 aa		14.02	□□□□□ -0.17
PRKCH-222	ENST00000556778	KIF13A	Q9H1H9	1805 aa		14.01	□□□□□ -0.17
PRKCH-222	ENST00000556778	GLI2	P10070	1586 aa		14.01	□□□□□ -0.17
PRKCH-222	ENST00000556778	CD109	Q6YHK3	1445 aa		14.01	□□□□□ -0.17
PRKCH-222	ENST00000556778	CDK11A	Q9UQ88	783 aa	Predicted RBP	14	□□□□□ -0.17
PRKCH-222	ENST00000556778	HECW1	Q76N89	1606 aa		14	□□□□□ -0.17
PRKCH-222	ENST00000556778	FYCO1	Q9BQS8	1478 aa		13.99	□□□□□ -0.17
PRKCH-222	ENST00000556778	MAGI3	Q5TCQ9	1506 aa		13.98	□□□□□ -0.17
PRKCH-222	ENST00000556778	VPS8	Q8N3P4	1428 aa		13.98	□□□□□ -0.17
PRKCH-222	ENST00000556778	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.97	□□□□□ -0.17
PRKCH-222	ENST00000556778	KANK4	Q5T7N3	995 aa	Predicted RBP	13.96	□□□□□ -0.17
PRKCH-222	ENST00000556778	TRO	Q12816	1431 aa	Predicted RBP	13.95	□□□□□ -0.18
PRKCH-222	ENST00000556778	LRRIQ1	Q96JM4	1722 aa		13.95	□□□□□ -0.18
PRKCH-222	ENST00000556778	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
PRKCH-222	ENST00000556778	MAP3K4	Q9Y6R4	1608 aa		13.93	□□□□□ -0.18
PRKCH-222	ENST00000556778	CCDC18	Q5T9S5	1454 aa		13.93	□□□□□ -0.18
PRKCH-222	ENST00000556778	PPRC1	Q5VV67	1664 aa	Known RBP	13.91	□□□□□ -0.18
PRKCH-222	ENST00000556778	TSPOAP1	O95153	1857 aa		13.91	□□□□□ -0.18
PRKCH-222	ENST00000556778	KIF14	Q15058	1648 aa		13.9	□□□□□ -0.18
PRKCH-222	ENST00000556778	RAPGEF3	O95398	923 aa		13.9	□□□□□ -0.18
PRKCH-222	ENST00000556778	ABCA9	Q8IUA7	1624 aa		13.9	□□□□□ -0.19
PRKCH-222	ENST00000556778	TTC37	Q6PGP7	1564 aa		13.89	□□□□□ -0.19
PRKCH-222	ENST00000556778	MTUS2	Q5JR59	1369 aa		13.89	□□□□□ -0.19
PRKCH-222	ENST00000556778	PLCH2	O75038	1416 aa		13.89	□□□□□ -0.19
PRKCH-222	ENST00000556778	POLA2	Q14181	598 aa		13.88	□□□□□ -0.19
PRKCH-222	ENST00000556778	TEX14	Q8IWB6	1497 aa		13.87	□□□□□ -0.19
PRKCH-222	ENST00000556778	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.87	□□□□□ -0.19
PRKCH-222	ENST00000556778	EFCAB2	Q5VUJ9	269 aa		13.86	□□□□□ -0.19
PRKCH-222	ENST00000556778	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.86	□□□□□ -0.19
PRKCH-222	ENST00000556778	FANCA	O15360	1455 aa		13.85	□□□□□ -0.19
PRKCH-222	ENST00000556778	CFAP43	Q8NDM7	1665 aa		13.85	□□□□□ -0.19
PRKCH-222	ENST00000556778	AKNA	Q7Z591	1439 aa		13.84	□□□□□ -0.19
PRKCH-222	ENST00000556778	ZNF644	Q9H582	1327 aa	Predicted RBP	13.84	□□□□□ -0.19
PRKCH-222	ENST00000556778	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.83	□□□□□ -0.2
PRKCH-222	ENST00000556778	KDM6B	O15054	1643 aa		13.82	□□□□□ -0.2
PRKCH-222	ENST00000556778	LRRC9	Q6ZRR7	1453 aa		13.82	□□□□□ -0.2
PRKCH-222	ENST00000556778	TIAM1	Q13009	1591 aa		13.82	□□□□□ -0.2
PRKCH-222	ENST00000556778	NEO1	Q92859	1461 aa		13.81	□□□□□ -0.2
PRKCH-222	ENST00000556778	AFAP1	Q8N556	730 aa		13.81	□□□□□ -0.2
PRKCH-222	ENST00000556778	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.81	□□□□□ -0.2
PRKCH-222	ENST00000556778	CCNB3	Q8WWL7	1395 aa		13.81	□□□□□ -0.2
PRKCH-222	ENST00000556778	SCAPER	Q9BY12	1400 aa		13.81	□□□□□ -0.2
PRKCH-222	ENST00000556778	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
PRKCH-222	ENST00000556778	ARAP3	Q8WWN8	1544 aa		13.8	□□□□□ -0.2
PRKCH-222	ENST00000556778	PHLDB1	Q86UU1	1377 aa		13.79	□□□□□ -0.2
PRKCH-222	ENST00000556778	NCOA2	Q15596	1464 aa		13.79	□□□□□ -0.2
PRKCH-222	ENST00000556778	ARHGAP5	Q13017	1502 aa		13.79	□□□□□ -0.2
PRKCH-222	ENST00000556778	ADGRL1	O94910	1474 aa		13.77	□□□□□ -0.21
PRKCH-222	ENST00000556778	MAP3K1	Q13233	1512 aa		13.77	□□□□□ -0.21
PRKCH-222	ENST00000556778	EHBP1L1	Q8N3D4	1523 aa		13.77	□□□□□ -0.21
PRKCH-222	ENST00000556778	ARHGEF12	Q9NZN5	1544 aa		13.77	□□□□□ -0.21
PRKCH-222	ENST00000556778	DENND4B	O75064	1496 aa	Predicted RBP	13.76	□□□□□ -0.21
PRKCH-222	ENST00000556778	TRAPPC8	Q9Y2L5	1435 aa		13.75	□□□□□ -0.21
PRKCH-222	ENST00000556778	POGZ	Q7Z3K3	1410 aa		13.72	□□□□□ -0.21
PRKCH-222	ENST00000556778	YEATS2	Q9ULM3	1422 aa		13.72	□□□□□ -0.21
PRKCH-222	ENST00000556778	FRMPD1	Q5SYB0	1578 aa		13.71	□□□□□ -0.21
PRKCH-222	ENST00000556778	MYT1L	Q9UL68	1186 aa		13.71	□□□□□ -0.21
PRKCH-222	ENST00000556778	KDM4F	A0A1W2PPD8	638 aa		13.7	□□□□□ -0.22
PRKCH-222	ENST00000556778	MYO5C	Q9NQX4	1742 aa		13.7	□□□□□ -0.22
PRKCH-222	ENST00000556778	CDC42BPB	Q9Y5S2	1711 aa		13.7	□□□□□ -0.22
PRKCH-222	ENST00000556778	PREX2	Q70Z35	1606 aa		13.69	□□□□□ -0.22
PRKCH-222	ENST00000556778	SAMD9L	Q8IVG5	1584 aa		13.69	□□□□□ -0.22
PRKCH-222	ENST00000556778	CDC42BPA	Q5VT25	1732 aa		13.67	□□□□□ -0.22
PRKCH-222	ENST00000556778	MBD5	Q9P267	1494 aa		13.67	□□□□□ -0.22
PRKCH-222	ENST00000556778	MYOM3	Q5VTT5	1437 aa		13.66	□□□□□ -0.22
PRKCH-222	ENST00000556778	KIAA1107	Q9UPP5	1409 aa		13.66	□□□□□ -0.22
PRKCH-222	ENST00000556778	ABCC1	P33527	1531 aa		13.66	□□□□□ -0.22
PRKCH-222	ENST00000556778	SYCP2	Q9BX26	1530 aa		13.66	□□□□□ -0.22
PRKCH-222	ENST00000556778	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.66	□□□□□ -0.22
PRKCH-222	ENST00000556778	SPAG9	O60271	1321 aa	Known RBP	13.65	□□□□□ -0.22
PRKCH-222	ENST00000556778	CFAP74	Q9C0B2	1584 aa		13.65	□□□□□ -0.22
PRKCH-222	ENST00000556778	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.64	□□□□□ -0.23
PRKCH-222	ENST00000556778	CAMSAP2	Q08AD1	1489 aa		13.64	□□□□□ -0.23
PRKCH-222	ENST00000556778	ZNF518A	Q6AHZ1	1483 aa		13.64	□□□□□ -0.23
PRKCH-222	ENST00000556778	MLEC	Q14165	292 aa		13.63	□□□□□ -0.23
PRKCH-222	ENST00000556778	RICTOR	Q6R327	1708 aa		13.62	□□□□□ -0.23
PRKCH-222	ENST00000556778	FAM50A	Q14320	339 aa	Known RBP	13.62	□□□□□ -0.23
PRKCH-222	ENST00000556778	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.62	□□□□□ -0.23
PRKCH-222	ENST00000556778	MIA2	Q96PC5	1412 aa		13.62	□□□□□ -0.23
PRKCH-222	ENST00000556778	FGD6	Q6ZV73	1430 aa		13.61	□□□□□ -0.23
PRKCH-222	ENST00000556778	PLEKHH2	Q8IVE3	1493 aa		13.61	□□□□□ -0.23
PRKCH-222	ENST00000556778	MLH3	Q9UHC1	1453 aa		13.61	□□□□□ -0.23
PRKCH-222	ENST00000556778	ZMYM4	Q5VZL5	1548 aa		13.6	□□□□□ -0.23
PRKCH-222	ENST00000556778	ZFYVE16	Q7Z3T8	1539 aa		13.6	□□□□□ -0.23
PRKCH-222	ENST00000556778	MAGI2	Q86UL8	1455 aa		13.6	□□□□□ -0.23
PRKCH-222	ENST00000556778	KDM5C	P41229	1560 aa		13.59	□□□□□ -0.23
PRKCH-222	ENST00000556778	CHIC2	Q9UKJ5	165 aa		13.59	□□□□□ -0.23
PRKCH-222	ENST00000556778	ATP10A	O60312	1499 aa		13.59	□□□□□ -0.23
PRKCH-222	ENST00000556778	TSPY4	P0CV99	314 aa		13.58	□□□□□ -0.24
PRKCH-222	ENST00000556778	TSPY10	P0CW01	314 aa		13.58	□□□□□ -0.24
PRKCH-222	ENST00000556778	RSPH4A	Q5TD94	716 aa		13.58	□□□□□ -0.24
PRKCH-222	ENST00000556778	ABCC5	O15440	1437 aa		13.57	□□□□□ -0.24
PRKCH-222	ENST00000556778	ITSN2	Q9NZM3	1697 aa		13.57	□□□□□ -0.24
PRKCH-222	ENST00000556778	ITGAE	P38570	1179 aa		13.56	□□□□□ -0.24
PRKCH-222	ENST00000556778	CCDC141	Q6ZP82	1450 aa		13.55	□□□□□ -0.24
PRKCH-222	ENST00000556778	ARHGEF40	Q8TER5	1519 aa		13.55	□□□□□ -0.24
PRKCH-222	ENST00000556778	C9orf84	Q5VXU9	1444 aa		13.55	□□□□□ -0.24
PRKCH-222	ENST00000556778	SIGLEC1	Q9BZZ2	1709 aa		13.54	□□□□□ -0.24
PRKCH-222	ENST00000556778	RRP7BP	Q9NSQ0	103 aa		13.54	□□□□□ -0.24
PRKCH-222	ENST00000556778	TCOF1	Q13428	1488 aa	Known RBP	13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms