RNA–Protein interactions for RNA: ENST00000556712.5

SNX6-208, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 851 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-208ENST00000556712 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
SNX6-208ENST00000556712 EHBP1L1Q8N3D4 1523 aa16.6■□□□□ 0.25
SNX6-208ENST00000556712 ARHGEF40Q8TER5 1519 aa16.6■□□□□ 0.25
SNX6-208ENST00000556712 KDM4FA0A1W2PPD8 638 aa16.59■□□□□ 0.25
SNX6-208ENST00000556712 ZMYM4Q5VZL5 1548 aa16.59■□□□□ 0.25
SNX6-208ENST00000556712 TIAM1Q13009 1591 aa16.59■□□□□ 0.25
SNX6-208ENST00000556712 POGZQ7Z3K3 1410 aa16.58■□□□□ 0.24
SNX6-208ENST00000556712 SCAPERQ9BY12 1400 aa16.58■□□□□ 0.24
SNX6-208ENST00000556712 ITSN2Q9NZM3 1697 aa16.57■□□□□ 0.24
SNX6-208ENST00000556712 MTUS2Q5JR59 1369 aa16.57■□□□□ 0.24
SNX6-208ENST00000556712 ABCC1P33527 1531 aa16.56■□□□□ 0.24
SNX6-208ENST00000556712 EFCAB2Q5VUJ9 269 aa16.55■□□□□ 0.24
SNX6-208ENST00000556712 SAMD9LQ8IVG5 1584 aa16.55■□□□□ 0.24
SNX6-208ENST00000556712 ZFYVE16Q7Z3T8 1539 aa16.54■□□□□ 0.24
SNX6-208ENST00000556712 GPATCH8Q9UKJ3 1502 aaKnown RBP16.54■□□□□ 0.24
SNX6-208ENST00000556712 SIGLEC1Q9BZZ2 1709 aa16.53■□□□□ 0.24
SNX6-208ENST00000556712 YEATS2Q9ULM3 1422 aa16.53■□□□□ 0.24
SNX6-208ENST00000556712 SUPT6HQ7KZ85 1726 aaKnown RBP16.52■□□□□ 0.24
SNX6-208ENST00000556712 KDM5CP41229 1560 aa16.51■□□□□ 0.23
SNX6-208ENST00000556712 ARHGEF12Q9NZN5 1544 aa16.51■□□□□ 0.23
SNX6-208ENST00000556712 SYCP2Q9BX26 1530 aa16.5■□□□□ 0.23
SNX6-208ENST00000556712 ZNF518AQ6AHZ1 1483 aa16.5■□□□□ 0.23
SNX6-208ENST00000556712 HECW2Q9P2P5 1572 aa16.5■□□□□ 0.23
SNX6-208ENST00000556712 CCNB3Q8WWL7 1395 aa16.5■□□□□ 0.23
SNX6-208ENST00000556712 BCORL1Q5H9F3 1711 aa16.48■□□□□ 0.23
SNX6-208ENST00000556712 TRAPPC8Q9Y2L5 1435 aa16.48■□□□□ 0.23
SNX6-208ENST00000556712 NCOA2Q15596 1464 aa16.48■□□□□ 0.23
SNX6-208ENST00000556712 MAGI2Q86UL8 1455 aa16.48■□□□□ 0.23
SNX6-208ENST00000556712 ZNF777Q9ULD5 760 aaPredicted RBP16.47■□□□□ 0.23
SNX6-208ENST00000556712 ABCA6Q8N139 1617 aa16.47■□□□□ 0.23
SNX6-208ENST00000556712 LRRC9Q6ZRR7 1453 aa16.47■□□□□ 0.23
SNX6-208ENST00000556712 DIP2CQ9Y2E4 1556 aa16.46■□□□□ 0.23
SNX6-208ENST00000556712 ADAMTSL3P82987 1691 aa16.46■□□□□ 0.23
SNX6-208ENST00000556712 AFAP1Q8N556 730 aa16.45■□□□□ 0.22
SNX6-208ENST00000556712 MADDQ8WXG6 1647 aa16.45■□□□□ 0.22
SNX6-208ENST00000556712 MAP3K1Q13233 1512 aa16.44■□□□□ 0.22
SNX6-208ENST00000556712 KIDINS220Q9ULH0 1771 aa16.43■□□□□ 0.22
SNX6-208ENST00000556712 ARID4BQ4LE39 1312 aaPredicted RBP16.43■□□□□ 0.22
SNX6-208ENST00000556712 KANK4Q5T7N3 995 aaPredicted RBP16.42■□□□□ 0.22
SNX6-208ENST00000556712 CFDP1Q9UEE9 299 aaPredicted RBP16.42■□□□□ 0.22
SNX6-208ENST00000556712 RIMS1Q86UR5 1692 aaKnown RBP16.41■□□□□ 0.22
SNX6-208ENST00000556712 C9orf84Q5VXU9 1444 aa16.41■□□□□ 0.22
SNX6-208ENST00000556712 ATP10AO60312 1499 aa16.41■□□□□ 0.22
SNX6-208ENST00000556712 PLEKHH2Q8IVE3 1493 aa16.4■□□□□ 0.22
SNX6-208ENST00000556712 MLH3Q9UHC1 1453 aa16.4■□□□□ 0.22
SNX6-208ENST00000556712 INO80Q9ULG1 1556 aaPredicted RBP16.39■□□□□ 0.21
SNX6-208ENST00000556712 MYT1LQ9UL68 1186 aa16.39■□□□□ 0.21
SNX6-208ENST00000556712 CAMSAP2Q08AD1 1489 aa16.39■□□□□ 0.21
SNX6-208ENST00000556712 ZNF644Q9H582 1327 aaPredicted RBP16.39■□□□□ 0.21
SNX6-208ENST00000556712 HNRNPMP52272 730 aaKnown RBP eCLIP16.38■□□□□ 0.21
SNX6-208ENST00000556712 FER1L4A9Z1Z3 1794 aa16.38■□□□□ 0.21
SNX6-208ENST00000556712 ATP7AQ04656 1500 aa16.37■□□□□ 0.21
SNX6-208ENST00000556712 KIAA1107Q9UPP5 1409 aa16.36■□□□□ 0.21
SNX6-208ENST00000556712 REREQ9P2R6 1566 aa16.36■□□□□ 0.21
SNX6-208ENST00000556712 PTPRMP28827 1452 aa16.35■□□□□ 0.21
SNX6-208ENST00000556712 MBD5Q9P267 1494 aa16.35■□□□□ 0.21
SNX6-208ENST00000556712 MLECQ14165 292 aa16.34■□□□□ 0.21
SNX6-208ENST00000556712 SPAG9O60271 1321 aaKnown RBP16.32■□□□□ 0.2
SNX6-208ENST00000556712 APLP2Q06481 763 aa16.32■□□□□ 0.2
SNX6-208ENST00000556712 MYOM3Q5VTT5 1437 aa16.32■□□□□ 0.2
SNX6-208ENST00000556712 ADGBQ8N7X0 1667 aa16.31■□□□□ 0.2
SNX6-208ENST00000556712 CCDC141Q6ZP82 1450 aa16.3■□□□□ 0.2
SNX6-208ENST00000556712 PLXNC1O60486 1568 aa16.3■□□□□ 0.2
SNX6-208ENST00000556712 ARHGEF5Q12774 1597 aa16.3■□□□□ 0.2
SNX6-208ENST00000556712 AGLP35573 1532 aa16.29■□□□□ 0.2
SNX6-208ENST00000556712 PTPN23Q9H3S7 1636 aa16.27■□□□□ 0.19
SNX6-208ENST00000556712 PLPPR3Q6T4P5 718 aa16.26■□□□□ 0.19
SNX6-208ENST00000556712 A2MP01023 1474 aa16.25■□□□□ 0.19
SNX6-208ENST00000556712 MIA2Q96PC5 1412 aa16.25■□□□□ 0.19
SNX6-208ENST00000556712 CROCC2H7BZ55 1655 aa16.24■□□□□ 0.19
SNX6-208ENST00000556712 RTEL1-TNFRSF6BF6WH68 1400 aa16.22■□□□□ 0.19
SNX6-208ENST00000556712 MAST1Q9Y2H9 1570 aa16.21■□□□□ 0.19
SNX6-208ENST00000556712 C3P01024 1663 aa16.21■□□□□ 0.19
SNX6-208ENST00000556712 FGD6Q6ZV73 1430 aa16.21■□□□□ 0.19
SNX6-208ENST00000556712 CLTCQ00610 1675 aaKnown RBP16.19■□□□□ 0.18
SNX6-208ENST00000556712 TCOF1Q13428 1488 aaKnown RBP16.19■□□□□ 0.18
SNX6-208ENST00000556712 DNMT1P26358 1616 aaKnown RBP16.19■□□□□ 0.18
SNX6-208ENST00000556712 LMTK3Q96Q04 1460 aa16.16■□□□□ 0.18
SNX6-208ENST00000556712 MROH2AA6NES4 1674 aa16.16■□□□□ 0.18
SNX6-208ENST00000556712 CEBPAP49715 358 aaPredicted RBP16.16■□□□□ 0.18
SNX6-208ENST00000556712 PREX1Q8TCU6 1659 aa16.15■□□□□ 0.18
SNX6-208ENST00000556712 RSPH4AQ5TD94 716 aa16.15■□□□□ 0.18
SNX6-208ENST00000556712 DHX29Q7Z478 1369 aaKnown RBP16.14■□□□□ 0.17
SNX6-208ENST00000556712 ABCC5O15440 1437 aa16.14■□□□□ 0.17
SNX6-208ENST00000556712 DAPK1P53355 1430 aa16.14■□□□□ 0.17
SNX6-208ENST00000556712 PPARGC1BQ86YN6 1023 aaKnown RBP16.14■□□□□ 0.17
SNX6-208ENST00000556712 SHANK2Q9UPX8 1470 aa16.14■□□□□ 0.17
SNX6-208ENST00000556712 TSPY4P0CV99 314 aa16.13■□□□□ 0.17
SNX6-208ENST00000556712 TSPY10P0CW01 314 aa16.13■□□□□ 0.17
SNX6-208ENST00000556712 GGT6Q6P531 493 aa16.12■□□□□ 0.17
SNX6-208ENST00000556712 CNTLNQ9NXG0 1405 aa16.11■□□□□ 0.17
SNX6-208ENST00000556712 ESF1Q9H501 851 aaKnown RBP16.11■□□□□ 0.17
SNX6-208ENST00000556712 RNF17Q9BXT8 1623 aaKnown RBP16.11■□□□□ 0.17
SNX6-208ENST00000556712 EIF2AK4Q9P2K8 1649 aaKnown RBP16.1■□□□□ 0.17
SNX6-208ENST00000556712 KIF3BO15066 747 aa16.08■□□□□ 0.16
SNX6-208ENST00000556712 KDM5DQ9BY66 1539 aa16.08■□□□□ 0.16
SNX6-208ENST00000556712 DUOX2Q9NRD8 1548 aa16.08■□□□□ 0.16
SNX6-208ENST00000556712 MROH1Q8NDA8 1641 aa16.08■□□□□ 0.16
SNX6-208ENST00000556712 FAM50AQ14320 339 aaKnown RBP16.07■□□□□ 0.16
SNX6-208ENST00000556712 KIF15Q9NS87 1388 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms