RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 FAM205CA6NFA0 338 aa12.12□□□□□ -0.47
SCFD1-219ENST00000556413 HOXB1P14653 301 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-219ENST00000556413 HS3ST6Q96QI5 342 aa12.12□□□□□ -0.47
SCFD1-219ENST00000556413 RIMBP2O15034 1052 aa12.09□□□□□ -0.47
SCFD1-219ENST00000556413 HS6ST3Q8IZP7 471 aa12.09□□□□□ -0.47
SCFD1-219ENST00000556413 PPP1R37O75864 691 aa12.06□□□□□ -0.48
SCFD1-219ENST00000556413 ZSWIM6Q9HCJ5 1215 aa12.05□□□□□ -0.48
SCFD1-219ENST00000556413 KIF3CO14782 793 aa12.04□□□□□ -0.48
SCFD1-219ENST00000556413 CHGAP10645 457 aaKnown RBP12.04□□□□□ -0.48
SCFD1-219ENST00000556413 GPR153Q6NV75 609 aa12.03□□□□□ -0.48
SCFD1-219ENST00000556413 C2orf72A6NCS6 295 aa12.02□□□□□ -0.49
SCFD1-219ENST00000556413 ERBB3P21860 1342 aa12.01□□□□□ -0.49
SCFD1-219ENST00000556413 KRTAP3-3Q9BYR6 98 aa12□□□□□ -0.49
SCFD1-219ENST00000556413 KRTAP3-2Q9BYR7 98 aa12□□□□□ -0.49
SCFD1-219ENST00000556413 SPNS2Q8IVW8 549 aa11.99□□□□□ -0.49
SCFD1-219ENST00000556413 ARSIQ5FYB1 569 aa11.97□□□□□ -0.49
SCFD1-219ENST00000556413 DNAJC5Q9H3Z4 198 aa11.96□□□□□ -0.49
SCFD1-219ENST00000556413 NKX1-1Q15270 411 aaPredicted RBP11.95□□□□□ -0.5
SCFD1-219ENST00000556413 VARS2Q5ST30 1063 aaKnown RBP11.95□□□□□ -0.5
SCFD1-219ENST00000556413 TMC2Q8TDI7 906 aa11.95□□□□□ -0.5
SCFD1-219ENST00000556413 MMRN1Q13201 1228 aa11.93□□□□□ -0.5
SCFD1-219ENST00000556413 KHSRPQ92945 711 aaKnown RBP eCLIP11.93□□□□□ -0.5
SCFD1-219ENST00000556413 SLC34A2O95436 690 aa11.88□□□□□ -0.51
SCFD1-219ENST00000556413 ZNF687Q8N1G0 1237 aa11.87□□□□□ -0.51
SCFD1-219ENST00000556413 ZNF316A6NFI3 1004 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-219ENST00000556413 PCDHGA4Q9Y5G9 962 aa11.85□□□□□ -0.51
SCFD1-219ENST00000556413 NUDT7P0C024 238 aa11.84□□□□□ -0.51
SCFD1-219ENST00000556413 RYDENQ9NUL5 291 aaKnown RBP11.84□□□□□ -0.51
SCFD1-219ENST00000556413 GPHNQ9NQX3 736 aaPredicted RBP11.83□□□□□ -0.52
SCFD1-219ENST00000556413 FOXK1P85037 733 aa11.82□□□□□ -0.52
SCFD1-219ENST00000556413 PLPP6Q8IY26 295 aa11.8□□□□□ -0.52
SCFD1-219ENST00000556413 DSG2Q14126 1118 aa11.79□□□□□ -0.52
SCFD1-219ENST00000556413 GTPBP6O43824 516 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-219ENST00000556413 DCAF8L2P0C7V8 631 aa11.78□□□□□ -0.52
SCFD1-219ENST00000556413 LHX6Q9UPM6 363 aa11.78□□□□□ -0.52
SCFD1-219ENST00000556413 PTCD2Q8WV60 388 aaKnown RBP11.77□□□□□ -0.53
SCFD1-219ENST00000556413 KDM4FA0A1W2PPD8 638 aa11.73□□□□□ -0.53
SCFD1-219ENST00000556413 CRISPLD2Q9H0B8 497 aa11.73□□□□□ -0.53
SCFD1-219ENST00000556413 NCKAP5LQ9HCH0 1330 aa11.69□□□□□ -0.54
SCFD1-219ENST00000556413 POTEEQ6S8J3 1075 aa11.68□□□□□ -0.54
SCFD1-219ENST00000556413 ANKRD13DQ6ZTN6 518 aa11.68□□□□□ -0.54
SCFD1-219ENST00000556413 TBC1D12O60347 775 aa11.66□□□□□ -0.54
SCFD1-219ENST00000556413 PDE4AP27815 886 aa11.66□□□□□ -0.54
SCFD1-219ENST00000556413 PBX2P40425 430 aa11.66□□□□□ -0.54
SCFD1-219ENST00000556413 LSM11P83369 360 aaKnown RBP eCLIP11.66□□□□□ -0.54
SCFD1-219ENST00000556413 PPP1R15BQ5SWA1 713 aa11.66□□□□□ -0.54
SCFD1-219ENST00000556413 PSDA5PKW4 1024 aaPredicted RBP11.65□□□□□ -0.54
SCFD1-219ENST00000556413 AXIN2Q9Y2T1 843 aa11.65□□□□□ -0.54
SCFD1-219ENST00000556413 OXER1Q8TDS5 423 aa11.64□□□□□ -0.55
SCFD1-219ENST00000556413 RNF166Q96A37 237 aaPredicted RBP11.64□□□□□ -0.55
SCFD1-219ENST00000556413 MYT1LQ9UL68 1186 aa11.64□□□□□ -0.55
SCFD1-219ENST00000556413 UPF1Q92900 1129 aaKnown RBP eCLIP11.62□□□□□ -0.55
SCFD1-219ENST00000556413 PTGER2P43116 358 aa11.61□□□□□ -0.55
SCFD1-219ENST00000556413 LARP6Q9BRS8 491 aaKnown RBP11.6□□□□□ -0.55
SCFD1-219ENST00000556413 ARHGAP33O14559 1287 aa11.59□□□□□ -0.55
SCFD1-219ENST00000556413 DDX27Q96GQ7 796 aaKnown RBP11.57□□□□□ -0.56
SCFD1-219ENST00000556413 MFSD10Q14728 455 aa11.56□□□□□ -0.56
SCFD1-219ENST00000556413 PPP4R3BQ5MIZ7 849 aa11.56□□□□□ -0.56
SCFD1-219ENST00000556413 CADPS2Q86UW7 1296 aa11.56□□□□□ -0.56
SCFD1-219ENST00000556413 PSEN2P49810 448 aa11.53□□□□□ -0.56
SCFD1-219ENST00000556413 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
SCFD1-219ENST00000556413 BBXQ8WY36 941 aaPredicted RBP11.53□□□□□ -0.56
SCFD1-219ENST00000556413 DMRTA1Q5VZB9 504 aa11.52□□□□□ -0.57
SCFD1-219ENST00000556413 ADGRD1Q6QNK2 874 aa11.51□□□□□ -0.57
SCFD1-219ENST00000556413 ZNF454Q8N9F8 522 aa11.5□□□□□ -0.57
SCFD1-219ENST00000556413 RTN4Q9NQC3 1192 aaKnown RBP11.5□□□□□ -0.57
SCFD1-219ENST00000556413 ANO8Q9HCE9 1232 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-219ENST00000556413 EMILIN3Q9NT22 766 aa11.48□□□□□ -0.57
SCFD1-219ENST00000556413 TK2O00142 265 aa11.47□□□□□ -0.57
SCFD1-219ENST00000556413 EVI5O60447 810 aa11.47□□□□□ -0.57
SCFD1-219ENST00000556413 FOSBP53539 338 aa11.46□□□□□ -0.57
SCFD1-219ENST00000556413 KCNK17Q96T54 332 aa11.46□□□□□ -0.57
SCFD1-219ENST00000556413 MAP3K9P80192 1104 aa11.45□□□□□ -0.58
SCFD1-219ENST00000556413 HRO43593 1189 aa11.44□□□□□ -0.58
SCFD1-219ENST00000556413 JPH4Q96JJ6 628 aa11.43□□□□□ -0.58
SCFD1-219ENST00000556413 BCL2L12Q9HB09 334 aa11.43□□□□□ -0.58
SCFD1-219ENST00000556413 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
SCFD1-219ENST00000556413 SPRYD3Q8NCJ5 442 aa11.4□□□□□ -0.58
SCFD1-219ENST00000556413 CAMK2BQ13554 666 aa11.39□□□□□ -0.59
SCFD1-219ENST00000556413 ZDHHC16Q969W1 377 aa11.38□□□□□ -0.59
SCFD1-219ENST00000556413 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.38□□□□□ -0.59
SCFD1-219ENST00000556413 VPS9D1Q9Y2B5 631 aa11.38□□□□□ -0.59
SCFD1-219ENST00000556413 PTPREP23469 700 aa11.37□□□□□ -0.59
SCFD1-219ENST00000556413 ADAM33Q9BZ11 813 aa11.37□□□□□ -0.59
SCFD1-219ENST00000556413 SLC4A5Q9BY07 1137 aa11.35□□□□□ -0.59
SCFD1-219ENST00000556413 PCDHGA10Q9Y5H3 936 aa11.34□□□□□ -0.59
SCFD1-219ENST00000556413 DPYSL4O14531 572 aa11.33□□□□□ -0.6
SCFD1-219ENST00000556413 STAC3Q96MF2 364 aa11.33□□□□□ -0.6
SCFD1-219ENST00000556413 HCSTQ9UBK5 93 aa11.33□□□□□ -0.6
SCFD1-219ENST00000556413 ZBED2Q9BTP6 218 aa11.32□□□□□ -0.6
SCFD1-219ENST00000556413 PAXIP1Q6ZW49 1069 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-219ENST00000556413 KCTD12Q96CX2 325 aaKnown RBP11.3□□□□□ -0.6
SCFD1-219ENST00000556413 CFAP44Q96MT7 982 aa11.3□□□□□ -0.6
SCFD1-219ENST00000556413 BHMG1C9JSJ3 638 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-219ENST00000556413 PHF14O94880 888 aa11.29□□□□□ -0.6
SCFD1-219ENST00000556413 TYW1BQ6NUM6 668 aa11.28□□□□□ -0.6
SCFD1-219ENST00000556413 FBXW7Q969H0 707 aa11.27□□□□□ -0.61
SCFD1-219ENST00000556413 PPP1R3GB7ZBB8 358 aa11.25□□□□□ -0.61
SCFD1-219ENST00000556413 COL9A1P20849 921 aa11.24□□□□□ -0.61
SCFD1-219ENST00000556413 EPAS1Q99814 870 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms