RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DOK7Q18PE1 504 aa14.59□□□□□ -0.07
PRPF39-209ENST00000556353 TMC2Q8TDI7 906 aa14.58□□□□□ -0.08
PRPF39-209ENST00000556353 BBXQ8WY36 941 aaPredicted RBP14.58□□□□□ -0.08
PRPF39-209ENST00000556353 C2orf72A6NCS6 295 aa14.57□□□□□ -0.08
PRPF39-209ENST00000556353 HOXB3P14651 431 aaPredicted RBP14.57□□□□□ -0.08
PRPF39-209ENST00000556353 KIF3CO14782 793 aa14.56□□□□□ -0.08
PRPF39-209ENST00000556353 ZNF710Q8N1W2 664 aa14.55□□□□□ -0.08
PRPF39-209ENST00000556353 RIMBP2O15034 1052 aa14.54□□□□□ -0.08
PRPF39-209ENST00000556353 MARVELD3Q96A59 401 aa14.48□□□□□ -0.09
PRPF39-209ENST00000556353 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.48□□□□□ -0.09
PRPF39-209ENST00000556353 EMP3P54852 163 aa14.45□□□□□ -0.1
PRPF39-209ENST00000556353 ZSWIM6Q9HCJ5 1215 aa14.45□□□□□ -0.1
PRPF39-209ENST00000556353 GPHNQ9NQX3 736 aaPredicted RBP14.45□□□□□ -0.1
PRPF39-209ENST00000556353 HOXB1P14653 301 aaPredicted RBP14.44□□□□□ -0.1
PRPF39-209ENST00000556353 FOXK1P85037 733 aa14.41□□□□□ -0.1
PRPF39-209ENST00000556353 SPRYD3Q8NCJ5 442 aa14.41□□□□□ -0.1
PRPF39-209ENST00000556353 PCDH10Q9P2E7 1040 aa14.4□□□□□ -0.1
PRPF39-209ENST00000556353 CRISPLD2Q9H0B8 497 aa14.39□□□□□ -0.11
PRPF39-209ENST00000556353 DSG2Q14126 1118 aa14.37□□□□□ -0.11
PRPF39-209ENST00000556353 GPR153Q6NV75 609 aa14.37□□□□□ -0.11
PRPF39-209ENST00000556353 PLPP6Q8IY26 295 aa14.37□□□□□ -0.11
PRPF39-209ENST00000556353 SLC34A2O95436 690 aa14.36□□□□□ -0.11
PRPF39-209ENST00000556353 PDE4AP27815 886 aa14.36□□□□□ -0.11
PRPF39-209ENST00000556353 ARSIQ5FYB1 569 aa14.35□□□□□ -0.11
PRPF39-209ENST00000556353 FAM205CA6NFA0 338 aa14.34□□□□□ -0.11
PRPF39-209ENST00000556353 PAXIP1Q6ZW49 1069 aaPredicted RBP14.34□□□□□ -0.11
PRPF39-209ENST00000556353 NCKAP5LQ9HCH0 1330 aa14.34□□□□□ -0.11
PRPF39-209ENST00000556353 CDAN1Q8IWY9 1227 aa14.33□□□□□ -0.12
PRPF39-209ENST00000556353 CFAP44Q96MT7 982 aa14.33□□□□□ -0.12
PRPF39-209ENST00000556353 PPP1R15BQ5SWA1 713 aa14.3□□□□□ -0.12
PRPF39-209ENST00000556353 HS3ST6Q96QI5 342 aa14.3□□□□□ -0.12
PRPF39-209ENST00000556353 LARP6Q9BRS8 491 aaKnown RBP14.3□□□□□ -0.12
PRPF39-209ENST00000556353 PCDHGA4Q9Y5G9 962 aa14.3□□□□□ -0.12
PRPF39-209ENST00000556353 ERBB3P21860 1342 aa14.3□□□□□ -0.12
PRPF39-209ENST00000556353 CADPS2Q86UW7 1296 aa14.29□□□□□ -0.12
PRPF39-209ENST00000556353 KHSRPQ92945 711 aaKnown RBP eCLIP14.28□□□□□ -0.121e-6■■□□□ 12
PRPF39-209ENST00000556353 PTCD2Q8WV60 388 aaKnown RBP14.26□□□□□ -0.13
PRPF39-209ENST00000556353 DDX27Q96GQ7 796 aaKnown RBP14.26□□□□□ -0.13
PRPF39-209ENST00000556353 POTEB3A0JP26 581 aa14.25□□□□□ -0.13
PRPF39-209ENST00000556353 POTEBQ6S5H4 581 aa14.25□□□□□ -0.13
PRPF39-209ENST00000556353 NUDT7P0C024 238 aa14.24□□□□□ -0.13
PRPF39-209ENST00000556353 MFSD10Q14728 455 aa14.23□□□□□ -0.13
PRPF39-209ENST00000556353 VARS2Q5ST30 1063 aaKnown RBP14.23□□□□□ -0.13
PRPF39-209ENST00000556353 TBC1D12O60347 775 aa14.21□□□□□ -0.13
PRPF39-209ENST00000556353 ZNF316A6NFI3 1004 aaPredicted RBP14.2□□□□□ -0.14
PRPF39-209ENST00000556353 UPF1Q92900 1129 aaKnown RBP eCLIP14.18□□□□□ -0.14
PRPF39-209ENST00000556353 OXER1Q8TDS5 423 aa14.16□□□□□ -0.14
PRPF39-209ENST00000556353 LHX6Q9UPM6 363 aa14.15□□□□□ -0.14
PRPF39-209ENST00000556353 PLSCR2Q9NRY7 297 aa14.12□□□□□ -0.15
PRPF39-209ENST00000556353 KDM4FA0A1W2PPD8 638 aa14.11□□□□□ -0.15
PRPF39-209ENST00000556353 ZNF687Q8N1G0 1237 aa14.11□□□□□ -0.15
PRPF39-209ENST00000556353 PSDA5PKW4 1024 aaPredicted RBP14.08□□□□□ -0.16
PRPF39-209ENST00000556353 KRTAP3-3Q9BYR6 98 aa14.08□□□□□ -0.16
PRPF39-209ENST00000556353 KRTAP3-2Q9BYR7 98 aa14.08□□□□□ -0.16
PRPF39-209ENST00000556353 MAP3K9P80192 1104 aa14.06□□□□□ -0.16
PRPF39-209ENST00000556353 EMILIN3Q9NT22 766 aa14.06□□□□□ -0.16
PRPF39-209ENST00000556353 CAMK2BQ13554 666 aa14.03□□□□□ -0.16
PRPF39-209ENST00000556353 WDR70Q9NW82 654 aa14.03□□□□□ -0.16
PRPF39-209ENST00000556353 TSHZ2Q9NRE2 1034 aa14.01□□□□□ -0.17
PRPF39-209ENST00000556353 EVI5O60447 810 aa14□□□□□ -0.17
PRPF39-209ENST00000556353 PPP4R3BQ5MIZ7 849 aa13.99□□□□□ -0.17
PRPF39-209ENST00000556353 PBX2P40425 430 aa13.98□□□□□ -0.17
PRPF39-209ENST00000556353 ANO8Q9HCE9 1232 aaPredicted RBP13.97□□□□□ -0.17
PRPF39-209ENST00000556353 PLCB2Q00722 1185 aa13.96□□□□□ -0.17
PRPF39-209ENST00000556353 SPNS2Q8IVW8 549 aa13.96□□□□□ -0.17
PRPF39-209ENST00000556353 DPYSL4O14531 572 aa13.94□□□□□ -0.18
PRPF39-209ENST00000556353 E2F4Q16254 413 aa13.94□□□□□ -0.18
PRPF39-209ENST00000556353 ZNF454Q8N9F8 522 aa13.94□□□□□ -0.18
PRPF39-209ENST00000556353 AXIN2Q9Y2T1 843 aa13.91□□□□□ -0.18
PRPF39-209ENST00000556353 ARHGAP33O14559 1287 aa13.9□□□□□ -0.18
PRPF39-209ENST00000556353 LSM11P83369 360 aaKnown RBP eCLIP13.9□□□□□ -0.18
PRPF39-209ENST00000556353 POTEEQ6S8J3 1075 aa13.9□□□□□ -0.18
PRPF39-209ENST00000556353 JPH4Q96JJ6 628 aa13.9□□□□□ -0.18
PRPF39-209ENST00000556353 FOSBP53539 338 aa13.89□□□□□ -0.19
PRPF39-209ENST00000556353 ANKRD13DQ6ZTN6 518 aa13.88□□□□□ -0.19
PRPF39-209ENST00000556353 MMRN1Q13201 1228 aa13.86□□□□□ -0.19
PRPF39-209ENST00000556353 KCNH8Q96L42 1107 aa13.86□□□□□ -0.19
PRPF39-209ENST00000556353 ZDHHC16Q969W1 377 aa13.84□□□□□ -0.19
PRPF39-209ENST00000556353 ARIH1Q9Y4X5 557 aaPredicted RBP13.83□□□□□ -0.2
PRPF39-209ENST00000556353 PSEN2P49810 448 aa13.82□□□□□ -0.2
PRPF39-209ENST00000556353 KCNK17Q96T54 332 aa13.82□□□□□ -0.2
PRPF39-209ENST00000556353 BCL2L12Q9HB09 334 aa13.82□□□□□ -0.2
PRPF39-209ENST00000556353 SPDYE16A6NNV3 312 aaPredicted RBP13.81□□□□□ -0.2
PRPF39-209ENST00000556353 PDIA6Q15084 440 aa13.81□□□□□ -0.2
PRPF39-209ENST00000556353 PCDHGA10Q9Y5H3 936 aa13.81□□□□□ -0.2
PRPF39-209ENST00000556353 PHF14O94880 888 aa13.8□□□□□ -0.2
PRPF39-209ENST00000556353 PTGER2P43116 358 aa13.79□□□□□ -0.2
PRPF39-209ENST00000556353 PTPREP23469 700 aa13.78□□□□□ -0.2
PRPF39-209ENST00000556353 DMRTA1Q5VZB9 504 aa13.78□□□□□ -0.2
PRPF39-209ENST00000556353 ADAM33Q9BZ11 813 aa13.78□□□□□ -0.2
PRPF39-209ENST00000556353 HAP1P54257 671 aaPredicted RBP13.77□□□□□ -0.21
PRPF39-209ENST00000556353 TYW1BQ6NUM6 668 aa13.77□□□□□ -0.21
PRPF39-209ENST00000556353 FBXW7Q969H0 707 aa13.77□□□□□ -0.21
PRPF39-209ENST00000556353 DDX12PQ92771 950 aa13.76□□□□□ -0.21
PRPF39-209ENST00000556353 TK2O00142 265 aa13.75□□□□□ -0.21
PRPF39-209ENST00000556353 ADGRD1Q6QNK2 874 aa13.75□□□□□ -0.21
PRPF39-209ENST00000556353 EPAS1Q99814 870 aa13.75□□□□□ -0.21
PRPF39-209ENST00000556353 MYT1LQ9UL68 1186 aa13.74□□□□□ -0.21
PRPF39-209ENST00000556353 KCNV2Q8TDN2 545 aa13.7□□□□□ -0.22
PRPF39-209ENST00000556353 ARHGEF1Q92888 912 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms