RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 TMEM92Q6UXU6 159 aa9.55□□□□□ -0.88
ATXN3-240ENST00000556339 FBXO22Q8NEZ5 403 aa9.54□□□□□ -0.88
ATXN3-240ENST00000556339 MFRPQ9BY79 579 aa9.54□□□□□ -0.88
ATXN3-240ENST00000556339 SPNS2Q8IVW8 549 aa9.52□□□□□ -0.89
ATXN3-240ENST00000556339 POTEB3A0JP26 581 aa9.5□□□□□ -0.89
ATXN3-240ENST00000556339 POTEBQ6S5H4 581 aa9.5□□□□□ -0.89
ATXN3-240ENST00000556339 ZSWIM6Q9HCJ5 1215 aa9.5□□□□□ -0.89
ATXN3-240ENST00000556339 MMRN1Q13201 1228 aa9.49□□□□□ -0.89
ATXN3-240ENST00000556339 VARS2Q5ST30 1063 aaKnown RBP9.48□□□□□ -0.89
ATXN3-240ENST00000556339 KRTAP3-3Q9BYR6 98 aa9.47□□□□□ -0.89
ATXN3-240ENST00000556339 KRTAP3-2Q9BYR7 98 aa9.47□□□□□ -0.89
ATXN3-240ENST00000556339 TMC2Q8TDI7 906 aa9.45□□□□□ -0.9
ATXN3-240ENST00000556339 ARSIQ5FYB1 569 aa9.44□□□□□ -0.9
ATXN3-240ENST00000556339 C2orf72A6NCS6 295 aa9.43□□□□□ -0.9
ATXN3-240ENST00000556339 GPR153Q6NV75 609 aa9.42□□□□□ -0.9
ATXN3-240ENST00000556339 CHGAP10645 457 aaKnown RBP9.4□□□□□ -0.9
ATXN3-240ENST00000556339 HS6ST3Q8IZP7 471 aa9.38□□□□□ -0.91
ATXN3-240ENST00000556339 KHSRPQ92945 711 aaKnown RBP eCLIP9.38□□□□□ -0.91
ATXN3-240ENST00000556339 KIF3CO14782 793 aa9.37□□□□□ -0.91
ATXN3-240ENST00000556339 ZNF687Q8N1G0 1237 aa9.37□□□□□ -0.91
ATXN3-240ENST00000556339 PPP1R37O75864 691 aa9.36□□□□□ -0.91
ATXN3-240ENST00000556339 ZNF316A6NFI3 1004 aaPredicted RBP9.35□□□□□ -0.91
ATXN3-240ENST00000556339 NUDT7P0C024 238 aa9.35□□□□□ -0.91
ATXN3-240ENST00000556339 PCDHGA4Q9Y5G9 962 aa9.32□□□□□ -0.92
ATXN3-240ENST00000556339 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
ATXN3-240ENST00000556339 ANKRD13DQ6ZTN6 518 aa9.3□□□□□ -0.92
ATXN3-240ENST00000556339 RNF166Q96A37 237 aaPredicted RBP9.3□□□□□ -0.92
ATXN3-240ENST00000556339 RYDENQ9NUL5 291 aaKnown RBP9.3□□□□□ -0.92
ATXN3-240ENST00000556339 SLC34A2O95436 690 aa9.29□□□□□ -0.92
ATXN3-240ENST00000556339 MYT1LQ9UL68 1186 aa9.29□□□□□ -0.92
ATXN3-240ENST00000556339 LHX6Q9UPM6 363 aa9.28□□□□□ -0.92
ATXN3-240ENST00000556339 NISCHQ9Y2I1 1504 aa9.26□□□□□ -0.93
ATXN3-240ENST00000556339 PLPP6Q8IY26 295 aa9.26□□□□□ -0.93
ATXN3-240ENST00000556339 PTGER2P43116 358 aa9.25□□□□□ -0.93
ATXN3-240ENST00000556339 LSM11P83369 360 aaKnown RBP eCLIP9.24□□□□□ -0.93
ATXN3-240ENST00000556339 FOXK1P85037 733 aa9.24□□□□□ -0.93
ATXN3-240ENST00000556339 GPHNQ9NQX3 736 aaPredicted RBP9.24□□□□□ -0.93
ATXN3-240ENST00000556339 TBC1D12O60347 775 aa9.23□□□□□ -0.93
ATXN3-240ENST00000556339 PBX2P40425 430 aa9.23□□□□□ -0.93
ATXN3-240ENST00000556339 PSDA5PKW4 1024 aaPredicted RBP9.22□□□□□ -0.93
ATXN3-240ENST00000556339 DSG2Q14126 1118 aa9.22□□□□□ -0.93
ATXN3-240ENST00000556339 NKX1-1Q15270 411 aaPredicted RBP9.21□□□□□ -0.94
ATXN3-240ENST00000556339 AXIN2Q9Y2T1 843 aa9.21□□□□□ -0.94
ATXN3-240ENST00000556339 PTCD2Q8WV60 388 aaKnown RBP9.19□□□□□ -0.94
ATXN3-240ENST00000556339 DNAJC5Q9H3Z4 198 aa9.19□□□□□ -0.94
ATXN3-240ENST00000556339 UPF1Q92900 1129 aaKnown RBP eCLIP9.17□□□□□ -0.94
ATXN3-240ENST00000556339 PPP4R3BQ5MIZ7 849 aa9.16□□□□□ -0.94
ATXN3-240ENST00000556339 KCNH8Q96L42 1107 aa9.16□□□□□ -0.94
ATXN3-240ENST00000556339 ARHGAP33O14559 1287 aa9.15□□□□□ -0.94
ATXN3-240ENST00000556339 PDE4AP27815 886 aa9.13□□□□□ -0.95
ATXN3-240ENST00000556339 PPP1R15BQ5SWA1 713 aa9.13□□□□□ -0.95
ATXN3-240ENST00000556339 POTEEQ6S8J3 1075 aa9.12□□□□□ -0.95
ATXN3-240ENST00000556339 STAC3Q96MF2 364 aa9.11□□□□□ -0.95
ATXN3-240ENST00000556339 CRISPLD2Q9H0B8 497 aa9.11□□□□□ -0.95
ATXN3-240ENST00000556339 ADGRD1Q6QNK2 874 aa9.1□□□□□ -0.95
ATXN3-240ENST00000556339 KDM4FA0A1W2PPD8 638 aa9.09□□□□□ -0.95
ATXN3-240ENST00000556339 GTPBP6O43824 516 aaPredicted RBP9.09□□□□□ -0.95
ATXN3-240ENST00000556339 PSEN2P49810 448 aa9.09□□□□□ -0.95
ATXN3-240ENST00000556339 ZNF454Q8N9F8 522 aa9.08□□□□□ -0.96
ATXN3-240ENST00000556339 OXER1Q8TDS5 423 aa9.08□□□□□ -0.96
ATXN3-240ENST00000556339 KCNK17Q96T54 332 aa9.08□□□□□ -0.96
ATXN3-240ENST00000556339 LARP6Q9BRS8 491 aaKnown RBP9.08□□□□□ -0.96
ATXN3-240ENST00000556339 DDX27Q96GQ7 796 aaKnown RBP9.07□□□□□ -0.96
ATXN3-240ENST00000556339 NCKAP5LQ9HCH0 1330 aa9.05□□□□□ -0.96
ATXN3-240ENST00000556339 TK2O00142 265 aa9.05□□□□□ -0.96
ATXN3-240ENST00000556339 DMRTA1Q5VZB9 504 aa9.05□□□□□ -0.96
ATXN3-240ENST00000556339 MAP3K9P80192 1104 aa9.03□□□□□ -0.96
ATXN3-240ENST00000556339 HCSTQ9UBK5 93 aa9.03□□□□□ -0.96
ATXN3-240ENST00000556339 EVI5O60447 810 aa9.01□□□□□ -0.97
ATXN3-240ENST00000556339 PTPREP23469 700 aa8.99□□□□□ -0.97
ATXN3-240ENST00000556339 KCTD12Q96CX2 325 aaKnown RBP8.99□□□□□ -0.97
ATXN3-240ENST00000556339 FOSBP53539 338 aa8.98□□□□□ -0.97
ATXN3-240ENST00000556339 BCL2L12Q9HB09 334 aa8.98□□□□□ -0.97
ATXN3-240ENST00000556339 HRO43593 1189 aa8.97□□□□□ -0.97
ATXN3-240ENST00000556339 JPH4Q96JJ6 628 aa8.97□□□□□ -0.97
ATXN3-240ENST00000556339 MFSD10Q14728 455 aa8.96□□□□□ -0.98
ATXN3-240ENST00000556339 ZDHHC16Q969W1 377 aa8.96□□□□□ -0.98
ATXN3-240ENST00000556339 GOLGA8CPA6NN73 597 aa8.95□□□□□ -0.98
ATXN3-240ENST00000556339 PLA2G2EQ9NZK7 142 aa8.95□□□□□ -0.98
ATXN3-240ENST00000556339 VPS9D1Q9Y2B5 631 aa8.95□□□□□ -0.98
ATXN3-240ENST00000556339 CADPS2Q86UW7 1296 aa8.93□□□□□ -0.98
ATXN3-240ENST00000556339 ANO8Q9HCE9 1232 aaPredicted RBP8.93□□□□□ -0.98
ATXN3-240ENST00000556339 PTPN5P54829 565 aa8.92□□□□□ -0.98
ATXN3-240ENST00000556339 ADAM33Q9BZ11 813 aa8.92□□□□□ -0.98
ATXN3-240ENST00000556339 EMILIN3Q9NT22 766 aa8.92□□□□□ -0.98
ATXN3-240ENST00000556339 MRPL50Q8N5N7 158 aaKnown RBP8.91□□□□□ -0.98
ATXN3-240ENST00000556339 BBXQ8WY36 941 aaPredicted RBP8.91□□□□□ -0.98
ATXN3-240ENST00000556339 NBPF3Q9H094 633 aa8.9□□□□□ -0.98
ATXN3-240ENST00000556339 ZBED2Q9BTP6 218 aa8.89□□□□□ -0.99
ATXN3-240ENST00000556339 SLC4A5Q9BY07 1137 aa8.89□□□□□ -0.99
ATXN3-240ENST00000556339 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.89□□□□□ -0.99
ATXN3-240ENST00000556339 TYW1BQ6NUM6 668 aa8.87□□□□□ -0.99
ATXN3-240ENST00000556339 WNT2BQ93097 391 aa8.87□□□□□ -0.99
ATXN3-240ENST00000556339 FBXW7Q969H0 707 aa8.87□□□□□ -0.99
ATXN3-240ENST00000556339 PPP1R3GB7ZBB8 358 aa8.86□□□□□ -0.99
ATXN3-240ENST00000556339 DPYSL4O14531 572 aa8.86□□□□□ -0.99
ATXN3-240ENST00000556339 AMER1Q5JTC6 1135 aaPredicted RBP8.86□□□□□ -0.99
ATXN3-240ENST00000556339 PCDHGA10Q9Y5H3 936 aa8.86□□□□□ -0.99
ATXN3-240ENST00000556339 PHF14O94880 888 aa8.85□□□□□ -0.99
ATXN3-240ENST00000556339 SPRYD3Q8NCJ5 442 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms