RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 RAPGEF3O95398 923 aa32.87■■■□□ 2.85
CCDC88C-210ENST00000555995 CDC42BPBQ9Y5S2 1711 aa32.87■■■□□ 2.85
CCDC88C-210ENST00000555995 ZMYM4Q5VZL5 1548 aa32.87■■■□□ 2.85
CCDC88C-210ENST00000555995 EHBP1L1Q8N3D4 1523 aa32.87■■■□□ 2.85
CCDC88C-210ENST00000555995 CDC42BPAQ5VT25 1732 aa32.84■■■□□ 2.85
CCDC88C-210ENST00000555995 POGZQ7Z3K3 1410 aa32.83■■■□□ 2.85
CCDC88C-210ENST00000555995 SCAPERQ9BY12 1400 aa32.83■■■□□ 2.85
CCDC88C-210ENST00000555995 ARHGEF40Q8TER5 1519 aa32.82■■■□□ 2.85
CCDC88C-210ENST00000555995 MAGI2Q86UL8 1455 aa32.8■■■□□ 2.84
CCDC88C-210ENST00000555995 ZNF518AQ6AHZ1 1483 aa32.76■■■□□ 2.84
CCDC88C-210ENST00000555995 KDM4FA0A1W2PPD8 638 aa32.76■■■□□ 2.83
CCDC88C-210ENST00000555995 TIAM1Q13009 1591 aa32.75■■■□□ 2.83
CCDC88C-210ENST00000555995 ZFYVE16Q7Z3T8 1539 aa32.74■■■□□ 2.83
CCDC88C-210ENST00000555995 ITSN2Q9NZM3 1697 aa32.72■■■□□ 2.83
CCDC88C-210ENST00000555995 ABCC1P33527 1531 aa32.72■■■□□ 2.83
CCDC88C-210ENST00000555995 CCNB3Q8WWL7 1395 aa32.71■■■□□ 2.83
CCDC88C-210ENST00000555995 SUPT6HQ7KZ85 1726 aaKnown RBP32.7■■■□□ 2.83
CCDC88C-210ENST00000555995 GPATCH8Q9UKJ3 1502 aaKnown RBP32.7■■■□□ 2.83
CCDC88C-210ENST00000555995 MAP3K1Q13233 1512 aa32.69■■■□□ 2.82
CCDC88C-210ENST00000555995 KDM5CP41229 1560 aa32.69■■■□□ 2.82
CCDC88C-210ENST00000555995 PLEKHH2Q8IVE3 1493 aa32.65■■■□□ 2.82
CCDC88C-210ENST00000555995 HECW2Q9P2P5 1572 aa32.63■■■□□ 2.81
CCDC88C-210ENST00000555995 SAMD9LQ8IVG5 1584 aa32.62■■■□□ 2.81
CCDC88C-210ENST00000555995 CFDP1Q9UEE9 299 aaPredicted RBP32.59■■■□□ 2.81
CCDC88C-210ENST00000555995 YEATS2Q9ULM3 1422 aa32.59■■■□□ 2.81
CCDC88C-210ENST00000555995 BCORL1Q5H9F3 1711 aa32.58■■■□□ 2.81
CCDC88C-210ENST00000555995 LRRC9Q6ZRR7 1453 aa32.58■■■□□ 2.81
CCDC88C-210ENST00000555995 NCOA2Q15596 1464 aa32.56■■■□□ 2.8
CCDC88C-210ENST00000555995 KIAA1107Q9UPP5 1409 aa32.56■■■□□ 2.8
CCDC88C-210ENST00000555995 SYCP2Q9BX26 1530 aa32.56■■■□□ 2.8
CCDC88C-210ENST00000555995 MLH3Q9UHC1 1453 aa32.55■■■□□ 2.8
CCDC88C-210ENST00000555995 ARID4BQ4LE39 1312 aaPredicted RBP32.55■■■□□ 2.8
CCDC88C-210ENST00000555995 ZNF777Q9ULD5 760 aaPredicted RBP32.55■■■□□ 2.8
CCDC88C-210ENST00000555995 ARHGEF12Q9NZN5 1544 aa32.55■■■□□ 2.8
CCDC88C-210ENST00000555995 C9orf84Q5VXU9 1444 aa32.54■■■□□ 2.8
CCDC88C-210ENST00000555995 ADAMTSL3P82987 1691 aa32.54■■■□□ 2.8
CCDC88C-210ENST00000555995 ATP10AO60312 1499 aa32.54■■■□□ 2.8
CCDC88C-210ENST00000555995 TRAPPC8Q9Y2L5 1435 aa32.52■■■□□ 2.8
CCDC88C-210ENST00000555995 AFAP1Q8N556 730 aa32.52■■■□□ 2.8
CCDC88C-210ENST00000555995 APLP2Q06481 763 aa32.51■■■□□ 2.79
CCDC88C-210ENST00000555995 MYT1LQ9UL68 1186 aa32.49■■■□□ 2.79
CCDC88C-210ENST00000555995 REREQ9P2R6 1566 aa32.49■■■□□ 2.79
CCDC88C-210ENST00000555995 DIP2CQ9Y2E4 1556 aa32.48■■■□□ 2.79
CCDC88C-210ENST00000555995 ABCA6Q8N139 1617 aa32.45■■■□□ 2.79
CCDC88C-210ENST00000555995 KIDINS220Q9ULH0 1771 aa32.44■■■□□ 2.78
CCDC88C-210ENST00000555995 MADDQ8WXG6 1647 aa32.43■■■□□ 2.78
CCDC88C-210ENST00000555995 SIGLEC1Q9BZZ2 1709 aa32.42■■■□□ 2.78
CCDC88C-210ENST00000555995 INO80Q9ULG1 1556 aaPredicted RBP32.38■■■□□ 2.77
CCDC88C-210ENST00000555995 ATP7AQ04656 1500 aa32.38■■■□□ 2.77
CCDC88C-210ENST00000555995 SPAG9O60271 1321 aaKnown RBP32.38■■■□□ 2.77
CCDC88C-210ENST00000555995 HNRNPMP52272 730 aaKnown RBP eCLIP32.38■■■□□ 2.77
CCDC88C-210ENST00000555995 CAMSAP2Q08AD1 1489 aa32.37■■■□□ 2.77
CCDC88C-210ENST00000555995 PTPRMP28827 1452 aa32.35■■■□□ 2.77
CCDC88C-210ENST00000555995 FER1L4A9Z1Z3 1794 aa32.35■■■□□ 2.77
CCDC88C-210ENST00000555995 RIMS1Q86UR5 1692 aaKnown RBP32.34■■■□□ 2.77
CCDC88C-210ENST00000555995 AGLP35573 1532 aa32.34■■■□□ 2.77
CCDC88C-210ENST00000555995 KANK4Q5T7N3 995 aaPredicted RBP32.33■■■□□ 2.77
CCDC88C-210ENST00000555995 MBD5Q9P267 1494 aa32.33■■■□□ 2.77
CCDC88C-210ENST00000555995 MYOM3Q5VTT5 1437 aa32.32■■■□□ 2.76
CCDC88C-210ENST00000555995 RSPH4AQ5TD94 716 aa32.31■■■□□ 2.76
CCDC88C-210ENST00000555995 MIA2Q96PC5 1412 aa32.31■■■□□ 2.76
CCDC88C-210ENST00000555995 CCDC141Q6ZP82 1450 aa32.3■■■□□ 2.76
CCDC88C-210ENST00000555995 ZNF644Q9H582 1327 aaPredicted RBP32.29■■■□□ 2.76
CCDC88C-210ENST00000555995 ARHGEF5Q12774 1597 aa32.29■■■□□ 2.76
CCDC88C-210ENST00000555995 ADGBQ8N7X0 1667 aa32.27■■■□□ 2.76
CCDC88C-210ENST00000555995 RTEL1-TNFRSF6BF6WH68 1400 aa32.26■■■□□ 2.76
CCDC88C-210ENST00000555995 MLECQ14165 292 aa32.22■■■□□ 2.75
CCDC88C-210ENST00000555995 PLXNC1O60486 1568 aa32.21■■■□□ 2.75
CCDC88C-210ENST00000555995 A2MP01023 1474 aa32.19■■■□□ 2.74
CCDC88C-210ENST00000555995 TSPY4P0CV99 314 aa32.13■■■□□ 2.73
CCDC88C-210ENST00000555995 TSPY10P0CW01 314 aa32.13■■■□□ 2.73
CCDC88C-210ENST00000555995 PTPN23Q9H3S7 1636 aa32.12■■■□□ 2.73
CCDC88C-210ENST00000555995 MAST1Q9Y2H9 1570 aa32.12■■■□□ 2.73
CCDC88C-210ENST00000555995 ESF1Q9H501 851 aaKnown RBP32.11■■■□□ 2.73
CCDC88C-210ENST00000555995 CNTLNQ9NXG0 1405 aa32.1■■■□□ 2.73
CCDC88C-210ENST00000555995 FGD6Q6ZV73 1430 aa32.09■■■□□ 2.73
CCDC88C-210ENST00000555995 TCOF1Q13428 1488 aaKnown RBP32.05■■■□□ 2.72
CCDC88C-210ENST00000555995 DHX29Q7Z478 1369 aaKnown RBP32.05■■■□□ 2.72
CCDC88C-210ENST00000555995 MROH2AA6NES4 1674 aa32.05■■■□□ 2.72
CCDC88C-210ENST00000555995 CROCC2H7BZ55 1655 aa32.04■■■□□ 2.72
CCDC88C-210ENST00000555995 SHANK2Q9UPX8 1470 aa32.03■■■□□ 2.72
CCDC88C-210ENST00000555995 DNMT1P26358 1616 aaKnown RBP32■■■□□ 2.71
CCDC88C-210ENST00000555995 C3P01024 1663 aa31.99■■■□□ 2.71
CCDC88C-210ENST00000555995 PPP6R1Q9UPN7 881 aa31.99■■■□□ 2.71
CCDC88C-210ENST00000555995 FAM135AQ9P2D6 1515 aa31.98■■■□□ 2.71
CCDC88C-210ENST00000555995 PREX1Q8TCU6 1659 aa31.97■■■□□ 2.71
CCDC88C-210ENST00000555995 PLPPR3Q6T4P5 718 aa31.95■■■□□ 2.71
CCDC88C-210ENST00000555995 LMTK3Q96Q04 1460 aa31.95■■■□□ 2.7
CCDC88C-210ENST00000555995 SETD1BQ9UPS6 1966 aaKnown RBP31.94■■■□□ 2.7
CCDC88C-210ENST00000555995 EIF2AK4Q9P2K8 1649 aaKnown RBP31.93■■■□□ 2.7
CCDC88C-210ENST00000555995 CLTCQ00610 1675 aaKnown RBP31.93■■■□□ 2.7
CCDC88C-210ENST00000555995 DAPK1P53355 1430 aa31.92■■■□□ 2.7
CCDC88C-210ENST00000555995 GGT6Q6P531 493 aa31.9■■■□□ 2.7
CCDC88C-210ENST00000555995 ABCC5O15440 1437 aa31.9■■■□□ 2.7
CCDC88C-210ENST00000555995 DUOX2Q9NRD8 1548 aa31.89■■■□□ 2.7
CCDC88C-210ENST00000555995 KIF3BO15066 747 aa31.86■■■□□ 2.69
CCDC88C-210ENST00000555995 CEBPAP49715 358 aaPredicted RBP31.86■■■□□ 2.69
CCDC88C-210ENST00000555995 RNF17Q9BXT8 1623 aaKnown RBP31.86■■■□□ 2.69
CCDC88C-210ENST00000555995 KDM5DQ9BY66 1539 aa31.85■■■□□ 2.69
CCDC88C-210ENST00000555995 NPATQ14207 1427 aa31.84■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms