RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 PLCG2P16885 1265 aa13.28□□□□□ -0.28
LINC00643-204ENST00000555934 FAM163AQ96GL9 167 aaPredicted RBP13.27□□□□□ -0.29
LINC00643-204ENST00000555934 SEC24BO95487 1268 aa13.26□□□□□ -0.29
LINC00643-204ENST00000555934 NBR1Q14596 966 aa13.25□□□□□ -0.29
LINC00643-204ENST00000555934 DPY19L2Q6NUT2 758 aa13.24□□□□□ -0.29
LINC00643-204ENST00000555934 WDR70Q9NW82 654 aa13.24□□□□□ -0.29
LINC00643-204ENST00000555934 PRKCSHP14314 528 aaPredicted RBP13.2□□□□□ -0.3
LINC00643-204ENST00000555934 MICALL2Q8IY33 904 aa13.14□□□□□ -0.31
LINC00643-204ENST00000555934 L3MBTL3Q96JM7 780 aaPredicted RBP13.14□□□□□ -0.31
LINC00643-204ENST00000555934 BOLA1Q9Y3E2 137 aa13.14□□□□□ -0.31
LINC00643-204ENST00000555934 G3V3G9 751 aa13.12□□□□□ -0.31
LINC00643-204ENST00000555934 TPRNQ4KMQ1 711 aa13.12□□□□□ -0.31
LINC00643-204ENST00000555934 KCNV2Q8TDN2 545 aa13.12□□□□□ -0.31
LINC00643-204ENST00000555934 TMEM121BQ9BXQ6 578 aaPredicted RBP13.11□□□□□ -0.31
LINC00643-204ENST00000555934 NCKAP5LQ9HCH0 1330 aa13.11□□□□□ -0.31
LINC00643-204ENST00000555934 P3H3Q8IVL6 736 aa13.1□□□□□ -0.31
LINC00643-204ENST00000555934 LARP6Q9BRS8 491 aaKnown RBP13.09□□□□□ -0.31
LINC00643-204ENST00000555934 SLAIN1Q8ND83 568 aa13.07□□□□□ -0.32
LINC00643-204ENST00000555934 PDE4AP27815 886 aa13.04□□□□□ -0.32
LINC00643-204ENST00000555934 ST18O60284 1047 aa13.02□□□□□ -0.33
LINC00643-204ENST00000555934 E2F4Q16254 413 aa13.02□□□□□ -0.33
LINC00643-204ENST00000555934 CRISPLD2Q9H0B8 497 aa13.02□□□□□ -0.33
LINC00643-204ENST00000555934 C3orf67Q6ZVT6 689 aa13□□□□□ -0.33
LINC00643-204ENST00000555934 CDAN1Q8IWY9 1227 aa13□□□□□ -0.33
LINC00643-204ENST00000555934 DDX27Q96GQ7 796 aaKnown RBP13□□□□□ -0.33
LINC00643-204ENST00000555934 MFSD10Q14728 455 aa12.96□□□□□ -0.33
LINC00643-204ENST00000555934 GPHNQ9NQX3 736 aaPredicted RBP12.95□□□□□ -0.34
LINC00643-204ENST00000555934 TMEM92Q6UXU6 159 aa12.94□□□□□ -0.34
LINC00643-204ENST00000555934 TMC2Q8TDI7 906 aa12.94□□□□□ -0.34
LINC00643-204ENST00000555934 ARHGEF1Q92888 912 aaKnown RBP12.93□□□□□ -0.34
LINC00643-204ENST00000555934 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.93□□□□□ -0.34
LINC00643-204ENST00000555934 C2orf72A6NCS6 295 aa12.92□□□□□ -0.34
LINC00643-204ENST00000555934 KIF3CO14782 793 aa12.92□□□□□ -0.34
LINC00643-204ENST00000555934 PPP1R15BQ5SWA1 713 aa12.9□□□□□ -0.34
LINC00643-204ENST00000555934 DSG2Q14126 1118 aa12.87□□□□□ -0.35
LINC00643-204ENST00000555934 SEMA3EO15041 775 aa12.86□□□□□ -0.35
LINC00643-204ENST00000555934 SNPHO15079 494 aa12.86□□□□□ -0.35
LINC00643-204ENST00000555934 FOXK1P85037 733 aa12.86□□□□□ -0.35
LINC00643-204ENST00000555934 CAMK2BQ13554 666 aa12.83□□□□□ -0.36
LINC00643-204ENST00000555934 LMOD2Q6P5Q4 547 aa12.81□□□□□ -0.36
LINC00643-204ENST00000555934 PLPP6Q8IY26 295 aa12.81□□□□□ -0.36
LINC00643-204ENST00000555934 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.79□□□□□ -0.36
LINC00643-204ENST00000555934 EMILIN3Q9NT22 766 aa12.78□□□□□ -0.36
LINC00643-204ENST00000555934 TESPA1A2RU30 521 aaPredicted RBP12.76□□□□□ -0.37
LINC00643-204ENST00000555934 TULP1O00294 542 aaPredicted RBP12.76□□□□□ -0.37
LINC00643-204ENST00000555934 DPYSL4O14531 572 aa12.76□□□□□ -0.37
LINC00643-204ENST00000555934 ARIH1Q9Y4X5 557 aaPredicted RBP12.74□□□□□ -0.37
LINC00643-204ENST00000555934 SPNS2Q8IVW8 549 aa12.72□□□□□ -0.37
LINC00643-204ENST00000555934 MARVELD3Q96A59 401 aa12.72□□□□□ -0.37
LINC00643-204ENST00000555934 MMRN1Q13201 1228 aa12.7□□□□□ -0.38
LINC00643-204ENST00000555934 UPF1Q92900 1129 aaKnown RBP eCLIP12.7□□□□□ -0.38
LINC00643-204ENST00000555934 MLLT3P42568 568 aaPredicted RBP12.69□□□□□ -0.38
LINC00643-204ENST00000555934 SLC34A2O95436 690 aa12.66□□□□□ -0.38
LINC00643-204ENST00000555934 MAP3K9P80192 1104 aa12.65□□□□□ -0.38
LINC00643-204ENST00000555934 SMYD5Q6GMV2 418 aa12.65□□□□□ -0.38
LINC00643-204ENST00000555934 OXER1Q8TDS5 423 aa12.65□□□□□ -0.38
LINC00643-204ENST00000555934 HOXB3P14651 431 aaPredicted RBP12.64□□□□□ -0.39
LINC00643-204ENST00000555934 DOK7Q18PE1 504 aa12.63□□□□□ -0.39
LINC00643-204ENST00000555934 POTEB3A0JP26 581 aa12.62□□□□□ -0.39
LINC00643-204ENST00000555934 PDIA6Q15084 440 aa12.62□□□□□ -0.39
LINC00643-204ENST00000555934 POTEBQ6S5H4 581 aa12.62□□□□□ -0.39
LINC00643-204ENST00000555934 PTCD2Q8WV60 388 aaKnown RBP12.62□□□□□ -0.39
LINC00643-204ENST00000555934 SPDYE16A6NNV3 312 aaPredicted RBP12.61□□□□□ -0.39
LINC00643-204ENST00000555934 EMP3P54852 163 aa12.61□□□□□ -0.39
LINC00643-204ENST00000555934 RBM26Q5T8P6 1007 aaKnown RBP12.61□□□□□ -0.39
LINC00643-204ENST00000555934 ZC3H15Q8WU90 426 aaKnown RBP12.61□□□□□ -0.39
LINC00643-204ENST00000555934 HS3ST6Q96QI5 342 aa12.58□□□□□ -0.4
LINC00643-204ENST00000555934 KRTAP3-3Q9BYR6 98 aa12.58□□□□□ -0.4
LINC00643-204ENST00000555934 KRTAP3-2Q9BYR7 98 aa12.58□□□□□ -0.4
LINC00643-204ENST00000555934 GRXCR2A6NFK2 248 aa12.57□□□□□ -0.4
LINC00643-204ENST00000555934 RIMBP2O15034 1052 aa12.57□□□□□ -0.4
LINC00643-204ENST00000555934 TBC1D12O60347 775 aa12.57□□□□□ -0.4
LINC00643-204ENST00000555934 PCDHGA4Q9Y5G9 962 aa12.57□□□□□ -0.4
LINC00643-204ENST00000555934 ZNF710Q8N1W2 664 aa12.55□□□□□ -0.4
LINC00643-204ENST00000555934 ZSWIM6Q9HCJ5 1215 aa12.55□□□□□ -0.4
LINC00643-204ENST00000555934 FAM205CA6NFA0 338 aa12.53□□□□□ -0.4
LINC00643-204ENST00000555934 EVI5O60447 810 aa12.51□□□□□ -0.41
LINC00643-204ENST00000555934 GPIHBP1Q8IV16 184 aa12.51□□□□□ -0.41
LINC00643-204ENST00000555934 DDX12PQ92771 950 aa12.51□□□□□ -0.41
LINC00643-204ENST00000555934 ZNF316A6NFI3 1004 aaPredicted RBP12.5□□□□□ -0.41
LINC00643-204ENST00000555934 ARSIQ5FYB1 569 aa12.5□□□□□ -0.41
LINC00643-204ENST00000555934 GPR153Q6NV75 609 aa12.5□□□□□ -0.41
LINC00643-204ENST00000555934 SLC24A3Q9HC58 644 aa12.49□□□□□ -0.41
LINC00643-204ENST00000555934 KHSRPQ92945 711 aaKnown RBP eCLIP12.48□□□□□ -0.41
LINC00643-204ENST00000555934 KDM4FA0A1W2PPD8 638 aa12.47□□□□□ -0.41
LINC00643-204ENST00000555934 HOXB1P14653 301 aaPredicted RBP12.47□□□□□ -0.41
LINC00643-204ENST00000555934 ZMYND10O75800 440 aa12.46□□□□□ -0.41
LINC00643-204ENST00000555934 NUDT7P0C024 238 aa12.46□□□□□ -0.41
LINC00643-204ENST00000555934 ANO8Q9HCE9 1232 aaPredicted RBP12.46□□□□□ -0.41
LINC00643-204ENST00000555934 NUTM2FA1L443 756 aa12.43□□□□□ -0.42
LINC00643-204ENST00000555934 PTGER2P43116 358 aa12.43□□□□□ -0.42
LINC00643-204ENST00000555934 OSBPP22059 807 aa12.42□□□□□ -0.42
LINC00643-204ENST00000555934 BARGINQ6ZT62 677 aa12.4□□□□□ -0.42
LINC00643-204ENST00000555934 KRI1Q8N9T8 703 aaKnown RBP12.4□□□□□ -0.42
LINC00643-204ENST00000555934 PRIM1P49642 420 aaKnown RBP12.39□□□□□ -0.43
LINC00643-204ENST00000555934 LHX6Q9UPM6 363 aa12.36□□□□□ -0.43
LINC00643-204ENST00000555934 GPR37O15354 613 aa12.35□□□□□ -0.43
LINC00643-204ENST00000555934 JPH4Q96JJ6 628 aa12.35□□□□□ -0.43
LINC00643-204ENST00000555934 PHF14O94880 888 aa12.34□□□□□ -0.43
LINC00643-204ENST00000555934 FOSBP53539 338 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms