RNA–Protein interactions for RNA: ENST00000555906.5

PRKCH-219, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 459 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-219	ENST00000555906	MAGI2	Q86UL8	1455 aa		32.41	■■■□□ 2.78
PRKCH-219	ENST00000555906	CLIP1	P30622	1438 aa		32.38	■■■□□ 2.77
PRKCH-219	ENST00000555906	CCDC18	Q5T9S5	1454 aa		32.36	■■■□□ 2.77
PRKCH-219	ENST00000555906	CASKIN1	Q8WXD9	1431 aa		32.35	■■■□□ 2.77
PRKCH-219	ENST00000555906	SIGLEC1	Q9BZZ2	1709 aa		32.35	■■■□□ 2.77
PRKCH-219	ENST00000555906	SCAPER	Q9BY12	1400 aa		32.34	■■■□□ 2.77
PRKCH-219	ENST00000555906	RIMS1	Q86UR5	1692 aa	Known RBP	32.33	■■■□□ 2.77
PRKCH-219	ENST00000555906	YEATS2	Q9ULM3	1422 aa		32.33	■■■□□ 2.77
PRKCH-219	ENST00000555906	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.32	■■■□□ 2.76
PRKCH-219	ENST00000555906	ARHGAP5	Q13017	1502 aa		32.3	■■■□□ 2.76
PRKCH-219	ENST00000555906	FYCO1	Q9BQS8	1478 aa		32.29	■■■□□ 2.76
PRKCH-219	ENST00000555906	PREX2	Q70Z35	1606 aa		32.28	■■■□□ 2.76
PRKCH-219	ENST00000555906	CDC42BPB	Q9Y5S2	1711 aa		32.28	■■■□□ 2.76
PRKCH-219	ENST00000555906	EFCAB2	Q5VUJ9	269 aa		32.27	■■■□□ 2.76
PRKCH-219	ENST00000555906	KDM5C	P41229	1560 aa		32.25	■■■□□ 2.75
PRKCH-219	ENST00000555906	ZNF518A	Q6AHZ1	1483 aa		32.24	■■■□□ 2.75
PRKCH-219	ENST00000555906	FER1L4	A9Z1Z3	1794 aa		32.22	■■■□□ 2.75
PRKCH-219	ENST00000555906	C9orf84	Q5VXU9	1444 aa		32.18	■■■□□ 2.74
PRKCH-219	ENST00000555906	ATP10A	O60312	1499 aa		32.17	■■■□□ 2.74
PRKCH-219	ENST00000555906	CDC42BPA	Q5VT25	1732 aa		32.17	■■■□□ 2.74
PRKCH-219	ENST00000555906	ABCC1	P33527	1531 aa		32.16	■■■□□ 2.74
PRKCH-219	ENST00000555906	ITSN2	Q9NZM3	1697 aa		32.15	■■■□□ 2.74
PRKCH-219	ENST00000555906	LMTK3	Q96Q04	1460 aa		32.14	■■■□□ 2.74
PRKCH-219	ENST00000555906	ARHGEF12	Q9NZN5	1544 aa		32.12	■■■□□ 2.73
PRKCH-219	ENST00000555906	DIP2C	Q9Y2E4	1556 aa		32.11	■■■□□ 2.73
PRKCH-219	ENST00000555906	RERE	Q9P2R6	1566 aa		32.1	■■■□□ 2.73
PRKCH-219	ENST00000555906	ABCA6	Q8N139	1617 aa		32.08	■■■□□ 2.73
PRKCH-219	ENST00000555906	MLH3	Q9UHC1	1453 aa		32.05	■■■□□ 2.72
PRKCH-219	ENST00000555906	ILDR1	Q86SU0	546 aa	Predicted RBP	32.02	■■■□□ 2.72
PRKCH-219	ENST00000555906	AFAP1	Q8N556	730 aa		32.02	■■■□□ 2.72
PRKCH-219	ENST00000555906	TRAPPC8	Q9Y2L5	1435 aa		32	■■■□□ 2.71
PRKCH-219	ENST00000555906	SAMD9L	Q8IVG5	1584 aa		31.99	■■■□□ 2.71
PRKCH-219	ENST00000555906	MLEC	Q14165	292 aa		31.99	■■■□□ 2.71
PRKCH-219	ENST00000555906	KIDINS220	Q9ULH0	1771 aa		31.97	■■■□□ 2.71
PRKCH-219	ENST00000555906	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.95	■■■□□ 2.7
PRKCH-219	ENST00000555906	AGL	P35573	1532 aa		31.94	■■■□□ 2.7
PRKCH-219	ENST00000555906	PREX1	Q8TCU6	1659 aa		31.93	■■■□□ 2.7
PRKCH-219	ENST00000555906	SYCP2	Q9BX26	1530 aa		31.93	■■■□□ 2.7
PRKCH-219	ENST00000555906	MYT1L	Q9UL68	1186 aa		31.89	■■■□□ 2.7
PRKCH-219	ENST00000555906	CEP162	Q5TB80	1403 aa		31.88	■■■□□ 2.69
PRKCH-219	ENST00000555906	EHBP1L1	Q8N3D4	1523 aa		31.88	■■■□□ 2.69
PRKCH-219	ENST00000555906	PLPPR3	Q6T4P5	718 aa		31.87	■■■□□ 2.69
PRKCH-219	ENST00000555906	MTUS2	Q5JR59	1369 aa		31.85	■■■□□ 2.69
PRKCH-219	ENST00000555906	PLEKHH2	Q8IVE3	1493 aa		31.84	■■■□□ 2.69
PRKCH-219	ENST00000555906	INO80	Q9ULG1	1556 aa	Predicted RBP	31.83	■■■□□ 2.69
PRKCH-219	ENST00000555906	TIAM1	Q13009	1591 aa		31.82	■■■□□ 2.68
PRKCH-219	ENST00000555906	C3	P01024	1663 aa		31.82	■■■□□ 2.68
PRKCH-219	ENST00000555906	KIAA1107	Q9UPP5	1409 aa		31.82	■■■□□ 2.68
PRKCH-219	ENST00000555906	CCNB3	Q8WWL7	1395 aa		31.81	■■■□□ 2.68
PRKCH-219	ENST00000555906	ATP7A	Q04656	1500 aa		31.8	■■■□□ 2.68
PRKCH-219	ENST00000555906	HSPA2	P54652	639 aa		31.79	■■■□□ 2.68
PRKCH-219	ENST00000555906	ZNF777	Q9ULD5	760 aa	Predicted RBP	31.78	■■■□□ 2.68
PRKCH-219	ENST00000555906	SETD1B	Q9UPS6	1966 aa	Known RBP	31.77	■■■□□ 2.68
PRKCH-219	ENST00000555906	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.75	■■■□□ 2.67
PRKCH-219	ENST00000555906	PLXNC1	O60486	1568 aa		31.75	■■■□□ 2.67
PRKCH-219	ENST00000555906	MROH2A	A6NES4	1674 aa		31.73	■■■□□ 2.67
PRKCH-219	ENST00000555906	SPAG9	O60271	1321 aa	Known RBP	31.72	■■■□□ 2.67
PRKCH-219	ENST00000555906	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.72	■■■□□ 2.67
PRKCH-219	ENST00000555906	CEBPA	P49715	358 aa	Predicted RBP	31.71	■■■□□ 2.67
PRKCH-219	ENST00000555906	CNTLN	Q9NXG0	1405 aa		31.71	■■■□□ 2.67
PRKCH-219	ENST00000555906	UHRF1BP1	Q6BDS2	1440 aa		31.7	■■■□□ 2.67
PRKCH-219	ENST00000555906	ADGB	Q8N7X0	1667 aa		31.68	■■■□□ 2.66
PRKCH-219	ENST00000555906	HNRNPM	P52272	730 aa	Known RBP eCLIP	31.68	■■■□□ 2.66
PRKCH-219	ENST00000555906	FBXO41	Q8TF61	875 aa		31.66	■■■□□ 2.66
PRKCH-219	ENST00000555906	A2M	P01023	1474 aa		31.64	■■■□□ 2.66
PRKCH-219	ENST00000555906	STRC	Q7RTU9	1775 aa		31.63	■■■□□ 2.65
PRKCH-219	ENST00000555906	ESF1	Q9H501	851 aa	Known RBP	31.63	■■■□□ 2.65
PRKCH-219	ENST00000555906	MBD5	Q9P267	1494 aa		31.62	■■■□□ 2.65
PRKCH-219	ENST00000555906	NCOA2	Q15596	1464 aa		31.59	■■■□□ 2.65
PRKCH-219	ENST00000555906	CLTC	Q00610	1675 aa	Known RBP	31.58	■■■□□ 2.65
PRKCH-219	ENST00000555906	VPS8	Q8N3P4	1428 aa		31.57	■■■□□ 2.64
PRKCH-219	ENST00000555906	NPAT	Q14207	1427 aa		31.55	■■■□□ 2.64
PRKCH-219	ENST00000555906	ZNF644	Q9H582	1327 aa	Predicted RBP	31.54	■■■□□ 2.64
PRKCH-219	ENST00000555906	CAMSAP2	Q08AD1	1489 aa		31.54	■■■□□ 2.64
PRKCH-219	ENST00000555906	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.54	■■■□□ 2.64
PRKCH-219	ENST00000555906	CCDC141	Q6ZP82	1450 aa		31.52	■■■□□ 2.64
PRKCH-219	ENST00000555906	ZNF142	P52746	1687 aa	Predicted RBP	31.48	■■■□□ 2.63
PRKCH-219	ENST00000555906	LRRC9	Q6ZRR7	1453 aa		31.47	■■■□□ 2.63
PRKCH-219	ENST00000555906	ARHGEF5	Q12774	1597 aa		31.47	■■■□□ 2.63
PRKCH-219	ENST00000555906	MYO3A	Q8NEV4	1616 aa		31.46	■■■□□ 2.63
PRKCH-219	ENST00000555906	ZMYM3	Q14202	1370 aa		31.46	■■■□□ 2.63
PRKCH-219	ENST00000555906	MAP3K1	Q13233	1512 aa		31.45	■■■□□ 2.63
PRKCH-219	ENST00000555906	DMRT2	Q9Y5R5	561 aa		31.44	■■■□□ 2.62
PRKCH-219	ENST00000555906	PTPRT	O14522	1441 aa		31.41	■■■□□ 2.62
PRKCH-219	ENST00000555906	NCOA1	Q15788	1441 aa		31.41	■■■□□ 2.62
PRKCH-219	ENST00000555906	FAM135A	Q9P2D6	1515 aa		31.4	■■■□□ 2.62
PRKCH-219	ENST00000555906	LOC105371045	A0A1W2PR82	267 aa		31.39	■■■□□ 2.62
PRKCH-219	ENST00000555906	CERK	Q8TCT0	537 aa		31.39	■■■□□ 2.62
PRKCH-219	ENST00000555906	DHX29	Q7Z478	1369 aa	Known RBP	31.39	■■■□□ 2.62
PRKCH-219	ENST00000555906	PTPRK	Q15262	1439 aa		31.39	■■■□□ 2.62
PRKCH-219	ENST00000555906	PPP6R1	Q9UPN7	881 aa		31.38	■■■□□ 2.61
PRKCH-219	ENST00000555906	CAMSAP1	Q5T5Y3	1602 aa		31.38	■■■□□ 2.61
PRKCH-219	ENST00000555906	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.36	■■■□□ 2.61
PRKCH-219	ENST00000555906	RSPH4A	Q5TD94	716 aa		31.36	■■■□□ 2.61
PRKCH-219	ENST00000555906	GGT6	Q6P531	493 aa		31.36	■■■□□ 2.61
PRKCH-219	ENST00000555906	MAST1	Q9Y2H9	1570 aa		31.34	■■■□□ 2.61
PRKCH-219	ENST00000555906	KDM5D	Q9BY66	1539 aa		31.33	■■■□□ 2.61
PRKCH-219	ENST00000555906	PLA2R1	Q13018	1463 aa		31.29	■■■□□ 2.6
PRKCH-219	ENST00000555906	MYOM3	Q5VTT5	1437 aa		31.27	■■■□□ 2.6
PRKCH-219	ENST00000555906	MIA2	Q96PC5	1412 aa		31.26	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms