RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 FRMPD1Q5SYB0 1578 aa22.45■■□□□ 1.18
SHMT2-217ENST00000555116 RICTORQ6R327 1708 aa22.44■■□□□ 1.18
SHMT2-217ENST00000555116 LRRC9Q6ZRR7 1453 aa22.44■■□□□ 1.18
SHMT2-217ENST00000555116 GPATCH8Q9UKJ3 1502 aaKnown RBP22.43■■□□□ 1.18
SHMT2-217ENST00000555116 SUPT6HQ7KZ85 1726 aaKnown RBP22.43■■□□□ 1.18
SHMT2-217ENST00000555116 RAPGEF3O95398 923 aa22.41■■□□□ 1.18
SHMT2-217ENST00000555116 DENND4BO75064 1496 aaPredicted RBP22.41■■□□□ 1.18
SHMT2-217ENST00000555116 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
SHMT2-217ENST00000555116 KANK4Q5T7N3 995 aaPredicted RBP22.39■■□□□ 1.17
SHMT2-217ENST00000555116 CCNB3Q8WWL7 1395 aa22.38■■□□□ 1.17
SHMT2-217ENST00000555116 SCAPERQ9BY12 1400 aa22.38■■□□□ 1.17
SHMT2-217ENST00000555116 NCOA2Q15596 1464 aa22.38■■□□□ 1.17
SHMT2-217ENST00000555116 ITSN2Q9NZM3 1697 aa22.37■■□□□ 1.17
SHMT2-217ENST00000555116 POGZQ7Z3K3 1410 aa22.35■■□□□ 1.17
SHMT2-217ENST00000555116 SAMD9LQ8IVG5 1584 aa22.34■■□□□ 1.17
SHMT2-217ENST00000555116 ABCC1P33527 1531 aa22.34■■□□□ 1.17
SHMT2-217ENST00000555116 APLP2Q06481 763 aa22.34■■□□□ 1.17
SHMT2-217ENST00000555116 ZMYM4Q5VZL5 1548 aa22.33■■□□□ 1.17
SHMT2-217ENST00000555116 ARHGEF12Q9NZN5 1544 aa22.32■■□□□ 1.16
SHMT2-217ENST00000555116 CFDP1Q9UEE9 299 aaPredicted RBP22.31■■□□□ 1.16
SHMT2-217ENST00000555116 ZNF777Q9ULD5 760 aaPredicted RBP22.28■■□□□ 1.16
SHMT2-217ENST00000555116 KDM5CP41229 1560 aa22.27■■□□□ 1.16
SHMT2-217ENST00000555116 ZNF518AQ6AHZ1 1483 aa22.27■■□□□ 1.16
SHMT2-217ENST00000555116 ARHGEF40Q8TER5 1519 aa22.26■■□□□ 1.15
SHMT2-217ENST00000555116 TRAPPC8Q9Y2L5 1435 aa22.26■■□□□ 1.15
SHMT2-217ENST00000555116 SYCP2Q9BX26 1530 aa22.26■■□□□ 1.15
SHMT2-217ENST00000555116 MAGI2Q86UL8 1455 aa22.25■■□□□ 1.15
SHMT2-217ENST00000555116 PLEKHH2Q8IVE3 1493 aa22.25■■□□□ 1.15
SHMT2-217ENST00000555116 KIAA1107Q9UPP5 1409 aa22.24■■□□□ 1.15
SHMT2-217ENST00000555116 AFAP1Q8N556 730 aa22.24■■□□□ 1.15
SHMT2-217ENST00000555116 ZFYVE16Q7Z3T8 1539 aa22.24■■□□□ 1.15
SHMT2-217ENST00000555116 ZNF644Q9H582 1327 aaPredicted RBP22.23■■□□□ 1.15
SHMT2-217ENST00000555116 YEATS2Q9ULM3 1422 aa22.23■■□□□ 1.15
SHMT2-217ENST00000555116 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
SHMT2-217ENST00000555116 HNRNPMP52272 730 aaKnown RBP eCLIP22.2■■□□□ 1.14
SHMT2-217ENST00000555116 MYOM3Q5VTT5 1437 aa22.2■■□□□ 1.14
SHMT2-217ENST00000555116 CAMSAP2Q08AD1 1489 aa22.19■■□□□ 1.14
SHMT2-217ENST00000555116 MLH3Q9UHC1 1453 aa22.18■■□□□ 1.14
SHMT2-217ENST00000555116 MBD5Q9P267 1494 aa22.18■■□□□ 1.14
SHMT2-217ENST00000555116 KIDINS220Q9ULH0 1771 aa22.17■■□□□ 1.14
SHMT2-217ENST00000555116 MIA2Q96PC5 1412 aa22.16■■□□□ 1.14
SHMT2-217ENST00000555116 SIGLEC1Q9BZZ2 1709 aa22.16■■□□□ 1.14
SHMT2-217ENST00000555116 KDM4FA0A1W2PPD8 638 aa22.15■■□□□ 1.14
SHMT2-217ENST00000555116 DIP2CQ9Y2E4 1556 aa22.14■■□□□ 1.13
SHMT2-217ENST00000555116 ABCA6Q8N139 1617 aa22.14■■□□□ 1.13
SHMT2-217ENST00000555116 ATP10AO60312 1499 aa22.13■■□□□ 1.13
SHMT2-217ENST00000555116 ARHGEF5Q12774 1597 aa22.11■■□□□ 1.13
SHMT2-217ENST00000555116 INO80Q9ULG1 1556 aaPredicted RBP22.11■■□□□ 1.13
SHMT2-217ENST00000555116 C9orf84Q5VXU9 1444 aa22.1■■□□□ 1.13
SHMT2-217ENST00000555116 SPAG9O60271 1321 aaKnown RBP22.1■■□□□ 1.13
SHMT2-217ENST00000555116 MYT1LQ9UL68 1186 aa22.09■■□□□ 1.13
SHMT2-217ENST00000555116 ATP7AQ04656 1500 aa22.09■■□□□ 1.13
SHMT2-217ENST00000555116 CCDC141Q6ZP82 1450 aa22.09■■□□□ 1.13
SHMT2-217ENST00000555116 PTPN23Q9H3S7 1636 aa22.09■■□□□ 1.13
SHMT2-217ENST00000555116 BCORL1Q5H9F3 1711 aa22.08■■□□□ 1.13
SHMT2-217ENST00000555116 FGD6Q6ZV73 1430 aa22.08■■□□□ 1.13
SHMT2-217ENST00000555116 REREQ9P2R6 1566 aa22.08■■□□□ 1.13
SHMT2-217ENST00000555116 ADAMTSL3P82987 1691 aa22.06■■□□□ 1.12
SHMT2-217ENST00000555116 RSPH4AQ5TD94 716 aa22.06■■□□□ 1.12
SHMT2-217ENST00000555116 ARID4BQ4LE39 1312 aaPredicted RBP22.05■■□□□ 1.12
SHMT2-217ENST00000555116 TCOF1Q13428 1488 aaKnown RBP22.05■■□□□ 1.12
SHMT2-217ENST00000555116 RTEL1-TNFRSF6BF6WH68 1400 aa22.03■■□□□ 1.12
SHMT2-217ENST00000555116 PPARGC1BQ86YN6 1023 aaKnown RBP22.03■■□□□ 1.12
SHMT2-217ENST00000555116 ADGBQ8N7X0 1667 aa22.01■■□□□ 1.11
SHMT2-217ENST00000555116 AGLP35573 1532 aa22■■□□□ 1.11
SHMT2-217ENST00000555116 MAST1Q9Y2H9 1570 aa21.99■■□□□ 1.11
SHMT2-217ENST00000555116 AEBP2Q6ZN18 517 aaPredicted RBP21.98■■□□□ 1.11
SHMT2-217ENST00000555116 CROCC2H7BZ55 1655 aa21.98■■□□□ 1.11
SHMT2-217ENST00000555116 MADDQ8WXG6 1647 aa21.98■■□□□ 1.11
SHMT2-217ENST00000555116 PLXNC1O60486 1568 aa21.98■■□□□ 1.11
SHMT2-217ENST00000555116 DNMT1P26358 1616 aaKnown RBP21.97■■□□□ 1.11
SHMT2-217ENST00000555116 A2MP01023 1474 aa21.96■■□□□ 1.11
SHMT2-217ENST00000555116 ABCC5O15440 1437 aa21.96■■□□□ 1.11
SHMT2-217ENST00000555116 TSPY4P0CV99 314 aa21.96■■□□□ 1.11
SHMT2-217ENST00000555116 TSPY10P0CW01 314 aa21.96■■□□□ 1.11
SHMT2-217ENST00000555116 DAPK1P53355 1430 aa21.93■■□□□ 1.1
SHMT2-217ENST00000555116 FER1L4A9Z1Z3 1794 aa21.93■■□□□ 1.1
SHMT2-217ENST00000555116 MLECQ14165 292 aa21.93■■□□□ 1.1
SHMT2-217ENST00000555116 RIMS1Q86UR5 1692 aaKnown RBP21.93■■□□□ 1.1
SHMT2-217ENST00000555116 SHANK2Q9UPX8 1470 aa21.92■■□□□ 1.1
SHMT2-217ENST00000555116 FAM50AQ14320 339 aaKnown RBP21.9■■□□□ 1.1
SHMT2-217ENST00000555116 DHX29Q7Z478 1369 aaKnown RBP21.89■■□□□ 1.1
SHMT2-217ENST00000555116 PTPRMP28827 1452 aa21.88■■□□□ 1.09
SHMT2-217ENST00000555116 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.82■■□□□ 1.08
SHMT2-217ENST00000555116 RRBP1Q9P2E9 1410 aaKnown RBP21.82■■□□□ 1.08
SHMT2-217ENST00000555116 DUOX2Q9NRD8 1548 aa21.81■■□□□ 1.08
SHMT2-217ENST00000555116 ADGRL2O95490 1459 aa21.8■■□□□ 1.08
SHMT2-217ENST00000555116 CHIC2Q9UKJ5 165 aa21.79■■□□□ 1.08
SHMT2-217ENST00000555116 PTPRKQ15262 1439 aa21.79■■□□□ 1.08
SHMT2-217ENST00000555116 KIF15Q9NS87 1388 aa21.79■■□□□ 1.08
SHMT2-217ENST00000555116 EIF2AK4Q9P2K8 1649 aaKnown RBP21.79■■□□□ 1.08
SHMT2-217ENST00000555116 NCOA1Q15788 1441 aa21.78■■□□□ 1.08
SHMT2-217ENST00000555116 KIF3BO15066 747 aa21.78■■□□□ 1.08
SHMT2-217ENST00000555116 ANKRD30AQ9BXX3 1397 aa21.78■■□□□ 1.08
SHMT2-217ENST00000555116 RRP7BPQ9NSQ0 103 aa21.77■■□□□ 1.08
SHMT2-217ENST00000555116 GGT6Q6P531 493 aa21.77■■□□□ 1.08
SHMT2-217ENST00000555116 RNF17Q9BXT8 1623 aaKnown RBP21.76■■□□□ 1.07
SHMT2-217ENST00000555116 MROH2AA6NES4 1674 aa21.76■■□□□ 1.07
SHMT2-217ENST00000555116 CLTCQ00610 1675 aaKnown RBP21.76■■□□□ 1.07
SHMT2-217ENST00000555116 C3P01024 1663 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms